Wall clock time and date at job start Mon Mar 30 2020 01:52:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 112.84670 * 2 1 4 4 C 1.53781 * 113.61888 * 228.69693 * 2 1 3 5 5 H 1.08995 * 113.61678 * 156.33285 * 4 2 1 6 6 O 1.42908 * 113.61167 * 25.50777 * 4 2 1 7 7 C 1.35896 * 116.99591 * 156.68855 * 6 4 2 8 8 C 1.38739 * 120.05912 * 5.43858 * 7 6 4 9 9 C 1.38149 * 119.94176 * 179.69961 * 8 7 6 10 10 C 1.38259 * 120.05475 * 0.59593 * 9 8 7 11 11 C 1.38267 * 120.11619 * 359.67646 * 10 9 8 12 12 C 1.38144 * 120.05234 * 0.02562 * 11 10 9 13 13 C 1.53954 * 87.11039 * 270.81214 * 4 2 1 14 14 C 1.53777 * 113.61879 * 131.19547 * 2 1 3 15 15 H 1.09000 * 113.61576 * 203.75229 * 14 2 1 16 16 N 1.46906 * 113.61026 * 334.57058 * 14 2 1 17 17 C 1.46902 * 110.99537 * 203.47216 * 16 14 2 18 18 C 1.50700 * 109.46861 * 179.97438 * 17 16 14 19 19 H 1.07997 * 120.00372 * 359.97438 * 18 17 16 20 20 C 1.37879 * 120.00183 * 179.97438 * 18 17 16 21 21 N 1.31514 * 120.00177 * 179.72722 * 20 18 17 22 22 Si 1.86809 * 119.99829 * 0.02562 * 20 18 17 23 23 H 1.48497 * 109.46784 * 89.99844 * 22 20 18 24 24 H 1.48491 * 109.46910 * 209.99924 * 22 20 18 25 25 H 1.48495 * 109.46824 * 330.00064 * 22 20 18 26 26 H 1.08994 * 109.47316 * 288.80395 * 1 2 3 27 27 H 1.08997 * 109.47558 * 48.80803 * 1 2 3 28 28 H 1.09007 * 109.46988 * 168.80630 * 1 2 3 29 29 H 1.09006 * 109.47159 * 191.20222 * 3 2 1 30 30 H 1.09004 * 109.47195 * 311.19394 * 3 2 1 31 31 H 1.08995 * 109.47466 * 71.19539 * 3 2 1 32 32 H 1.08000 * 120.02607 * 359.97438 * 8 7 6 33 33 H 1.08002 * 119.96877 * 180.27078 * 9 8 7 34 34 H 1.08006 * 119.94333 * 179.70531 * 10 9 8 35 35 H 1.07998 * 119.97295 * 180.02562 * 11 10 9 36 36 H 1.07997 * 120.02418 * 179.97438 * 12 11 10 37 37 H 1.08993 * 113.66704 * 220.11114 * 13 4 2 38 38 H 1.08998 * 113.62146 * 89.15272 * 13 4 2 39 39 H 1.00901 * 110.99801 * 327.41887 * 16 14 2 40 40 H 1.08993 * 109.47498 * 59.99905 * 17 16 14 41 41 H 1.09003 * 109.46991 * 299.99325 * 17 16 14 42 42 H 0.96996 * 119.99722 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1240 1.4100 0.0000 4 6 2.1461 -0.9300 -1.0585 5 1 3.1591 -0.6510 -1.3483 6 8 1.2926 -1.1651 -2.1803 7 6 1.8898 -1.5411 -3.3417 8 6 3.2543 -1.7904 -3.3725 9 6 3.8578 -2.1785 -4.5530 10 6 3.1055 -2.3066 -5.7059 11 6 1.7465 -2.0532 -5.6791 12 6 1.1371 -1.6708 -4.4998 13 6 2.0950 -2.0438 0.0032 14 6 2.1461 -0.9280 1.0602 15 1 3.1586 -0.6476 1.3506 16 7 1.2680 -1.1689 2.2130 17 6 2.0470 -1.5604 3.3953 18 6 1.1146 -1.7979 4.5551 19 1 0.0499 -1.6704 4.4270 20 6 1.6208 -2.1781 5.7800 21 7 0.8075 -2.3802 6.7936 22 14 3.4625 -2.3981 6.0020 23 1 4.0666 -1.1110 6.4304 24 1 3.7163 -3.4326 7.0365 25 1 4.0685 -2.8254 4.7154 26 1 -0.3633 0.3312 0.9728 27 1 -0.3634 0.6768 -0.7733 28 1 -0.3633 -1.0082 -0.1995 29 1 3.1941 1.3534 -0.1997 30 1 1.6414 2.0077 -0.7733 31 1 1.9599 1.8735 0.9727 32 1 3.8433 -1.6855 -2.4733 33 1 4.9192 -2.3770 -4.5764 34 1 3.5801 -2.6055 -6.6289 35 1 1.1610 -2.1544 -6.5810 36 1 0.0757 -1.4726 -4.4796 37 1 2.9747 -2.6873 0.0048 38 1 1.1598 -2.6037 0.0041 39 1 0.6970 -0.3601 2.4078 40 1 2.7468 -0.7643 3.6493 41 1 2.5996 -2.4749 3.1798 42 1 1.1637 -2.6473 7.6554 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411808315.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:41 Heat of formation + Delta-G solvation = 8.920871 kcal Electronic energy + Delta-G solvation = -21100.439478 eV Core-core repulsion = 18046.352547 eV Total energy + Delta-G solvation = -3054.086931 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.74562 -39.13877 -36.78523 -34.04163 -31.98887 -31.20374 -30.41709 -29.80249 -27.49032 -27.02659 -24.24811 -22.67922 -22.34167 -21.74930 -20.90647 -18.42640 -18.30833 -16.68496 -16.17461 -15.87088 -15.48570 -15.12074 -14.71650 -14.40309 -14.23738 -13.95022 -13.56835 -13.18979 -13.07669 -12.87851 -12.39762 -12.35503 -12.22251 -11.93361 -11.73634 -11.69284 -11.47949 -11.12183 -11.07327 -10.83597 -10.58227 -10.48749 -10.16087 -9.84471 -9.71525 -9.26357 -9.15805 -8.61996 -8.24303 -7.53331 -6.07522 -4.05522 1.18618 1.32573 3.20462 3.26291 3.34280 3.36567 3.65357 4.40118 4.41417 4.55523 4.66160 4.73650 4.79086 4.94468 5.00503 5.12353 5.22523 5.25165 5.29000 5.34951 5.46410 5.52142 5.60370 5.75775 5.84567 5.85809 6.00573 6.07331 6.10300 6.17371 6.18673 6.25968 6.35993 6.37488 6.49826 6.61144 6.71562 6.78831 6.98428 7.46431 7.60329 7.88713 8.30042 8.63038 9.00707 9.54419 11.05825 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.029078 B = 0.003617 C = 0.003455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.684131 B = 7739.276140 C = 8102.579739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.078 4.078 3 C -0.140 4.140 4 C 0.059 3.941 5 H 0.095 0.905 6 O -0.293 6.293 7 C 0.138 3.862 8 C -0.212 4.212 9 C -0.080 4.080 10 C -0.168 4.168 11 C -0.082 4.082 12 C -0.158 4.158 13 C -0.138 4.138 14 C 0.069 3.931 15 H 0.066 0.934 16 N -0.660 5.660 17 C 0.163 3.837 18 C -0.516 4.516 19 H 0.079 0.921 20 C 0.069 3.931 21 N -0.900 5.900 22 Si 0.877 3.123 23 H -0.278 1.278 24 H -0.286 1.286 25 H -0.267 1.267 26 H 0.063 0.937 27 H 0.051 0.949 28 H 0.067 0.933 29 H 0.053 0.947 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.129 0.871 33 H 0.122 0.878 34 H 0.120 0.880 35 H 0.126 0.874 36 H 0.129 0.871 37 H 0.065 0.935 38 H 0.101 0.899 39 H 0.338 0.662 40 H -0.021 1.021 41 H 0.026 0.974 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.098 4.179 -23.318 24.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.078 4.078 3 C -0.197 4.197 4 C 0.003 3.997 5 H 0.112 0.888 6 O -0.206 6.206 7 C 0.092 3.908 8 C -0.231 4.231 9 C -0.099 4.099 10 C -0.186 4.186 11 C -0.100 4.100 12 C -0.177 4.177 13 C -0.177 4.177 14 C -0.042 4.042 15 H 0.084 0.916 16 N -0.292 5.292 17 C 0.035 3.965 18 C -0.554 4.554 19 H 0.097 0.903 20 C -0.133 4.133 21 N -0.539 5.539 22 Si 0.705 3.295 23 H -0.204 1.204 24 H -0.211 1.211 25 H -0.192 1.192 26 H 0.082 0.918 27 H 0.070 0.930 28 H 0.086 0.914 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.146 0.854 33 H 0.140 0.860 34 H 0.138 0.862 35 H 0.144 0.856 36 H 0.147 0.853 37 H 0.084 0.916 38 H 0.120 0.880 39 H 0.158 0.842 40 H -0.003 1.003 41 H 0.044 0.956 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.737 3.517 -23.220 23.958 hybrid contribution 1.759 0.582 0.606 1.949 sum 6.496 4.099 -22.614 23.883 Atomic orbital electron populations 1.21302 0.91547 1.02752 1.01409 1.22395 0.97769 0.93886 0.93785 1.21803 1.00103 0.95525 1.02286 1.24325 0.93817 0.98629 0.82927 0.88753 1.86193 1.35873 1.81441 1.17065 1.19134 0.91360 0.93681 0.86583 1.21335 0.94314 1.07585 0.99850 1.20946 0.99690 0.97014 0.92202 1.21017 0.94362 1.04782 0.98420 1.20949 0.94777 0.97229 0.97079 1.20476 1.00442 1.06124 0.90654 1.23614 1.03445 0.96830 0.93792 1.22767 0.95925 0.94458 0.91049 0.91597 1.60621 1.22956 1.40376 1.05214 1.20065 0.93478 0.94541 0.88389 1.21057 0.95450 1.46285 0.92624 0.90268 1.24907 0.97655 0.94938 0.95812 1.69897 1.34721 1.47509 1.01767 0.86824 0.86336 0.78160 0.78194 1.20373 1.21140 1.19191 0.91803 0.92967 0.91409 0.92812 0.92394 0.91826 0.85362 0.86043 0.86207 0.85632 0.85316 0.91641 0.88038 0.84194 1.00325 0.95580 0.92637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.55 7.85 37.16 0.29 -1.26 16 2 C -0.08 -1.05 1.26 -153.70 -0.19 -1.24 16 3 C -0.14 -1.65 9.19 37.16 0.34 -1.30 16 4 C 0.06 0.78 3.10 -25.83 -0.08 0.70 16 5 H 0.09 1.10 5.78 -51.93 -0.30 0.80 16 6 O -0.29 -4.01 9.25 -19.41 -0.18 -4.19 16 7 C 0.14 1.74 6.68 -39.21 -0.26 1.48 16 8 C -0.21 -2.41 9.02 -39.43 -0.36 -2.77 16 9 C -0.08 -0.79 10.04 -39.61 -0.40 -1.19 16 10 C -0.17 -1.54 10.04 -39.56 -0.40 -1.93 16 11 C -0.08 -0.77 10.04 -39.61 -0.40 -1.17 16 12 C -0.16 -1.76 9.99 -39.43 -0.39 -2.16 16 13 C -0.14 -2.08 7.38 -25.83 -0.19 -2.27 16 14 C 0.07 1.12 3.57 -66.90 -0.24 0.89 16 15 H 0.07 1.07 7.84 -51.93 -0.41 0.66 16 16 N -0.66 -13.25 6.03 -107.13 -0.65 -13.90 16 17 C 0.16 3.91 4.36 -4.98 -0.02 3.89 16 18 C -0.52 -14.69 9.87 -34.44 -0.34 -15.03 16 19 H 0.08 2.44 8.06 -52.49 -0.42 2.02 16 20 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 21 N -0.90 -27.67 13.96 55.43 0.77 -26.90 16 22 Si 0.88 21.55 27.47 -169.99 -4.67 16.89 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 25 H -0.27 -6.33 6.54 56.52 0.37 -5.96 16 26 H 0.06 0.90 6.75 -51.93 -0.35 0.55 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.07 1.01 7.20 -51.93 -0.37 0.64 16 29 H 0.05 0.58 7.95 -51.93 -0.41 0.17 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.13 1.36 5.91 -52.49 -0.31 1.05 16 33 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 34 H 0.12 0.82 8.06 -52.48 -0.42 0.40 16 35 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 36 H 0.13 1.30 8.06 -52.49 -0.42 0.87 16 37 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.10 1.68 7.66 -51.93 -0.40 1.28 16 39 H 0.34 6.60 7.00 -39.29 -0.28 6.32 16 40 H -0.02 -0.50 7.56 -51.93 -0.39 -0.89 16 41 H 0.03 0.65 7.20 -51.93 -0.37 0.27 16 42 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 337.32 15.07 5.08 5.08 Total: -1.00 -30.76 337.32 -8.94 -39.69 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -6.57 Total: 4.80 kcal Atomic # 6 Polarization: -18.75 SS G_CDS: -2.73 Total: -21.48 kcal Atomic # 7 Polarization: -40.92 SS G_CDS: 0.13 Total: -40.79 kcal Atomic # 8 Polarization: -4.01 SS G_CDS: -0.18 Total: -4.19 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.67 Total: 16.89 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.76 -8.94 -39.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411808315.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.615 kcal (2) G-P(sol) polarization free energy of solvation -30.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.694 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds