Wall clock time and date at job start Mon Mar 30 2020 01:52:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 112.84670 * 2 1 4 4 C 1.53781 * 113.61888 * 228.69693 * 2 1 3 5 5 H 1.08995 * 113.61678 * 156.33285 * 4 2 1 6 6 O 1.42908 * 113.61167 * 25.50777 * 4 2 1 7 7 C 1.35896 * 116.99591 * 156.68855 * 6 4 2 8 8 C 1.38739 * 120.05912 * 5.43858 * 7 6 4 9 9 C 1.38149 * 119.94176 * 179.69961 * 8 7 6 10 10 C 1.38259 * 120.05475 * 0.59593 * 9 8 7 11 11 C 1.38267 * 120.11619 * 359.67646 * 10 9 8 12 12 C 1.38144 * 120.05234 * 0.02562 * 11 10 9 13 13 C 1.53954 * 87.11039 * 270.81214 * 4 2 1 14 14 C 1.53777 * 113.61879 * 131.19547 * 2 1 3 15 15 H 1.09000 * 113.61576 * 203.75229 * 14 2 1 16 16 N 1.46906 * 113.61026 * 334.57058 * 14 2 1 17 17 C 1.46902 * 110.99537 * 203.47216 * 16 14 2 18 18 C 1.50700 * 109.46861 * 179.97438 * 17 16 14 19 19 H 1.07997 * 120.00372 * 359.97438 * 18 17 16 20 20 C 1.37879 * 120.00183 * 179.97438 * 18 17 16 21 21 N 1.31514 * 120.00177 * 179.72722 * 20 18 17 22 22 Si 1.86809 * 119.99829 * 0.02562 * 20 18 17 23 23 H 1.48497 * 109.46784 * 89.99844 * 22 20 18 24 24 H 1.48491 * 109.46910 * 209.99924 * 22 20 18 25 25 H 1.48495 * 109.46824 * 330.00064 * 22 20 18 26 26 H 1.08994 * 109.47316 * 288.80395 * 1 2 3 27 27 H 1.08997 * 109.47558 * 48.80803 * 1 2 3 28 28 H 1.09007 * 109.46988 * 168.80630 * 1 2 3 29 29 H 1.09006 * 109.47159 * 191.20222 * 3 2 1 30 30 H 1.09004 * 109.47195 * 311.19394 * 3 2 1 31 31 H 1.08995 * 109.47466 * 71.19539 * 3 2 1 32 32 H 1.08000 * 120.02607 * 359.97438 * 8 7 6 33 33 H 1.08002 * 119.96877 * 180.27078 * 9 8 7 34 34 H 1.08006 * 119.94333 * 179.70531 * 10 9 8 35 35 H 1.07998 * 119.97295 * 180.02562 * 11 10 9 36 36 H 1.07997 * 120.02418 * 179.97438 * 12 11 10 37 37 H 1.08993 * 113.66704 * 220.11114 * 13 4 2 38 38 H 1.08998 * 113.62146 * 89.15272 * 13 4 2 39 39 H 1.00901 * 110.99801 * 327.41887 * 16 14 2 40 40 H 1.08993 * 109.47498 * 59.99905 * 17 16 14 41 41 H 1.09003 * 109.46991 * 299.99325 * 17 16 14 42 42 H 0.96996 * 119.99722 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1240 1.4100 0.0000 4 6 2.1461 -0.9300 -1.0585 5 1 3.1591 -0.6510 -1.3483 6 8 1.2926 -1.1651 -2.1803 7 6 1.8898 -1.5411 -3.3417 8 6 3.2543 -1.7904 -3.3725 9 6 3.8578 -2.1785 -4.5530 10 6 3.1055 -2.3066 -5.7059 11 6 1.7465 -2.0532 -5.6791 12 6 1.1371 -1.6708 -4.4998 13 6 2.0950 -2.0438 0.0032 14 6 2.1461 -0.9280 1.0602 15 1 3.1586 -0.6476 1.3506 16 7 1.2680 -1.1689 2.2130 17 6 2.0470 -1.5604 3.3953 18 6 1.1146 -1.7979 4.5551 19 1 0.0499 -1.6704 4.4270 20 6 1.6208 -2.1781 5.7800 21 7 0.8075 -2.3802 6.7936 22 14 3.4625 -2.3981 6.0020 23 1 4.0666 -1.1110 6.4304 24 1 3.7163 -3.4326 7.0365 25 1 4.0685 -2.8254 4.7154 26 1 -0.3633 0.3312 0.9728 27 1 -0.3634 0.6768 -0.7733 28 1 -0.3633 -1.0082 -0.1995 29 1 3.1941 1.3534 -0.1997 30 1 1.6414 2.0077 -0.7733 31 1 1.9599 1.8735 0.9727 32 1 3.8433 -1.6855 -2.4733 33 1 4.9192 -2.3770 -4.5764 34 1 3.5801 -2.6055 -6.6289 35 1 1.1610 -2.1544 -6.5810 36 1 0.0757 -1.4726 -4.4796 37 1 2.9747 -2.6873 0.0048 38 1 1.1598 -2.6037 0.0041 39 1 0.6970 -0.3601 2.4078 40 1 2.7468 -0.7643 3.6493 41 1 2.5996 -2.4749 3.1798 42 1 1.1637 -2.6473 7.6554 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411808315.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:40 Heat of formation + Delta-G solvation = -9.566134 kcal Electronic energy + Delta-G solvation = -21101.241134 eV Core-core repulsion = 18046.352547 eV Total energy + Delta-G solvation = -3054.888587 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.78060 -40.08196 -37.76194 -35.83274 -33.99091 -32.00091 -31.47040 -30.65963 -29.16418 -28.30324 -25.40729 -23.75044 -23.49386 -22.94799 -22.33903 -19.65362 -19.32495 -18.61290 -17.08957 -16.98059 -16.64247 -16.29926 -16.19536 -15.54656 -15.40203 -15.21876 -14.72406 -14.44108 -14.31305 -14.14383 -13.99920 -13.50535 -13.27924 -13.17806 -12.96393 -12.83560 -12.59595 -12.53277 -12.41166 -12.06150 -11.96515 -11.77317 -11.55394 -11.50423 -11.15371 -10.94365 -10.82449 -9.91751 -9.16643 -9.07045 -8.30973 -6.35475 0.42761 0.53653 1.33166 1.35818 1.46897 2.25978 2.33076 2.87793 3.03177 3.32010 3.40222 3.59840 3.75555 3.82174 3.96826 4.05218 4.22814 4.24796 4.35273 4.48216 4.53430 4.58525 4.64934 4.75917 4.77866 4.82191 4.89970 4.97074 5.01654 5.06940 5.11952 5.13855 5.15232 5.35861 5.46050 5.48203 5.53655 5.55143 5.63618 5.93271 5.98856 6.54917 6.56845 6.66547 6.76314 7.29681 8.85941 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.029078 B = 0.003617 C = 0.003455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.684131 B = 7739.276140 C = 8102.579739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.072 4.072 3 C -0.137 4.137 4 C 0.075 3.925 5 H 0.115 0.885 6 O -0.308 6.308 7 C 0.110 3.890 8 C -0.224 4.224 9 C -0.086 4.086 10 C -0.167 4.167 11 C -0.083 4.083 12 C -0.174 4.174 13 C -0.141 4.141 14 C 0.060 3.940 15 H 0.074 0.926 16 N -0.670 5.670 17 C 0.176 3.824 18 C -0.528 4.528 19 H 0.036 0.964 20 C 0.007 3.993 21 N -0.948 5.948 22 Si 0.952 3.048 23 H -0.265 1.265 24 H -0.282 1.282 25 H -0.250 1.250 26 H 0.055 0.945 27 H 0.066 0.934 28 H 0.049 0.951 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.059 0.941 32 H 0.133 0.867 33 H 0.144 0.856 34 H 0.147 0.853 35 H 0.152 0.848 36 H 0.131 0.869 37 H 0.073 0.927 38 H 0.079 0.921 39 H 0.338 0.662 40 H -0.012 1.012 41 H 0.023 0.977 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.722 4.605 -25.721 27.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.073 4.073 3 C -0.194 4.194 4 C 0.018 3.982 5 H 0.132 0.868 6 O -0.221 6.221 7 C 0.065 3.935 8 C -0.242 4.242 9 C -0.104 4.104 10 C -0.185 4.185 11 C -0.101 4.101 12 C -0.192 4.192 13 C -0.180 4.180 14 C -0.050 4.050 15 H 0.092 0.908 16 N -0.301 5.301 17 C 0.047 3.953 18 C -0.566 4.566 19 H 0.055 0.945 20 C -0.190 4.190 21 N -0.589 5.589 22 Si 0.775 3.225 23 H -0.190 1.190 24 H -0.207 1.207 25 H -0.174 1.174 26 H 0.074 0.926 27 H 0.085 0.915 28 H 0.068 0.932 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.078 0.922 32 H 0.151 0.849 33 H 0.162 0.838 34 H 0.165 0.835 35 H 0.169 0.831 36 H 0.149 0.851 37 H 0.091 0.909 38 H 0.098 0.902 39 H 0.158 0.842 40 H 0.005 0.995 41 H 0.041 0.959 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 7.356 3.951 -25.660 26.984 hybrid contribution 0.827 0.418 1.242 1.549 sum 8.183 4.369 -24.418 26.121 Atomic orbital electron populations 1.21251 0.92153 1.01939 1.01356 1.22330 0.97301 0.94890 0.92732 1.21788 1.01007 0.94046 1.02537 1.24148 0.94618 0.96839 0.82574 0.86767 1.86159 1.36384 1.82013 1.17578 1.19420 0.92272 0.95368 0.86485 1.21489 0.93925 1.08008 1.00804 1.21291 1.00988 0.96306 0.91845 1.21417 0.94306 1.03446 0.99292 1.21305 0.95354 0.96134 0.97315 1.20713 1.00790 1.06636 0.91079 1.23568 1.02661 0.97162 0.94593 1.22908 0.95776 0.96360 0.90001 0.90793 1.60499 1.23616 1.41005 1.04991 1.19786 0.92693 0.94604 0.88204 1.21349 0.94384 1.46172 0.94704 0.94546 1.25894 1.03405 0.94439 0.95280 1.70056 1.37415 1.48856 1.02542 0.85649 0.79377 0.78673 0.78825 1.18964 1.20717 1.17403 0.92645 0.91513 0.93225 0.91363 0.91197 0.92225 0.84945 0.83819 0.83539 0.83055 0.85136 0.90881 0.90242 0.84182 0.99476 0.95931 0.92358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.03 7.85 71.98 0.56 -2.46 16 2 C -0.07 -1.87 1.26 -51.66 -0.06 -1.93 16 3 C -0.14 -2.92 9.19 71.98 0.66 -2.26 16 4 C 0.07 1.86 3.10 31.18 0.10 1.95 16 5 H 0.11 2.39 5.78 -2.39 -0.01 2.37 16 6 O -0.31 -8.25 9.25 -92.38 -0.85 -9.10 16 7 C 0.11 2.64 6.68 22.51 0.15 2.79 16 8 C -0.22 -4.68 9.02 22.37 0.20 -4.48 16 9 C -0.09 -1.46 10.04 22.25 0.22 -1.24 16 10 C -0.17 -2.54 10.04 22.28 0.22 -2.31 16 11 C -0.08 -1.36 10.04 22.25 0.22 -1.14 16 12 C -0.17 -3.67 9.99 22.37 0.22 -3.44 16 13 C -0.14 -4.19 7.38 31.18 0.23 -3.96 16 14 C 0.06 1.90 3.57 45.44 0.16 2.06 16 15 H 0.07 2.26 7.84 -2.39 -0.02 2.24 16 16 N -0.67 -27.22 6.03 -492.85 -2.97 -30.19 16 17 C 0.18 8.41 4.36 85.56 0.37 8.78 16 18 C -0.53 -30.90 9.87 25.60 0.25 -30.65 16 19 H 0.04 2.37 8.06 -2.91 -0.02 2.35 16 20 C 0.01 0.43 5.47 84.66 0.46 0.89 16 21 N -0.95 -59.82 13.96 21.45 0.30 -59.52 16 22 Si 0.95 44.19 27.47 68.60 1.88 46.08 16 23 H -0.26 -11.69 7.11 99.48 0.71 -10.99 16 24 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 25 H -0.25 -10.86 6.54 99.48 0.65 -10.21 16 26 H 0.05 1.60 6.75 -2.39 -0.02 1.58 16 27 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.05 1.53 7.20 -2.38 -0.02 1.51 16 29 H 0.07 1.27 7.95 -2.38 -0.02 1.25 16 30 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.13 2.53 5.91 -2.91 -0.02 2.52 16 33 H 0.14 1.71 8.06 -2.91 -0.02 1.69 16 34 H 0.15 1.41 8.06 -2.91 -0.02 1.39 16 35 H 0.15 1.59 8.06 -2.91 -0.02 1.57 16 36 H 0.13 2.56 8.06 -2.91 -0.02 2.54 16 37 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.08 2.71 7.66 -2.39 -0.02 2.69 16 39 H 0.34 13.56 7.00 -89.69 -0.63 12.93 16 40 H -0.01 -0.57 7.56 -2.39 -0.02 -0.59 16 41 H 0.02 1.10 7.20 -2.39 -0.02 1.08 16 42 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 Total: -1.00 -67.85 337.32 2.66 -65.19 By element: Atomic # 1 Polarization: 24.63 SS G_CDS: 0.32 Total: 24.94 kcal Atomic # 6 Polarization: -41.39 SS G_CDS: 3.99 Total: -37.40 kcal Atomic # 7 Polarization: -87.04 SS G_CDS: -2.67 Total: -89.71 kcal Atomic # 8 Polarization: -8.25 SS G_CDS: -0.85 Total: -9.10 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 1.88 Total: 46.08 kcal Total: -67.85 2.66 -65.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411808315.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.624 kcal (2) G-P(sol) polarization free energy of solvation -67.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds