Wall clock time and date at job start Mon Mar 30 2020 02:08:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 C 1.38234 * 119.99770 * 269.72838 * 3 2 1 5 5 C 1.38235 * 119.99933 * 179.78838 * 4 3 2 6 6 C 1.38240 * 119.99615 * 0.44078 * 5 4 3 7 7 C 1.50703 * 119.99825 * 179.83444 * 6 5 4 8 8 H 1.08999 * 109.47338 * 179.97438 * 7 6 5 9 9 C 1.53002 * 109.47040 * 59.97520 * 7 6 5 10 10 C 1.53006 * 109.47008 * 299.98123 * 7 6 5 11 11 C 1.50704 * 109.46855 * 185.00302 * 10 7 6 12 12 O 1.21277 * 120.00348 * 359.97438 * 11 10 7 13 13 N 1.34776 * 119.99751 * 179.97438 * 11 10 7 14 14 C 1.46499 * 119.99646 * 179.97438 * 13 11 10 15 15 C 1.50710 * 109.46976 * 179.97438 * 14 13 11 16 16 H 1.08001 * 119.99505 * 359.97438 * 15 14 13 17 17 C 1.37870 * 119.99782 * 179.97438 * 15 14 13 18 18 N 1.31507 * 120.00550 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99631 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47424 * 0.02562 * 19 17 15 21 21 H 1.48508 * 109.47023 * 119.99990 * 19 17 15 22 22 H 1.48501 * 109.47517 * 239.99995 * 19 17 15 23 23 C 1.38227 * 120.00231 * 359.81118 * 6 5 4 24 24 C 1.38232 * 119.99860 * 90.00280 * 3 2 1 25 25 H 1.08992 * 109.47399 * 59.99914 * 1 2 3 26 26 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47194 * 299.99742 * 1 2 3 28 28 H 1.09002 * 109.47398 * 120.00078 * 2 1 3 29 29 H 1.09001 * 109.47194 * 240.00258 * 2 1 3 30 30 H 1.08001 * 120.00330 * 359.97438 * 4 3 2 31 31 H 1.08002 * 120.00360 * 180.27290 * 5 4 3 32 32 H 1.08996 * 109.47378 * 299.99872 * 9 7 6 33 33 H 1.09006 * 109.47111 * 60.00419 * 9 7 6 34 34 H 1.09004 * 109.47030 * 180.02562 * 9 7 6 35 35 H 1.08999 * 109.46955 * 304.99332 * 10 7 6 36 36 H 1.08993 * 109.47689 * 64.99776 * 10 7 6 37 37 H 0.96997 * 120.00295 * 359.97438 * 13 11 10 38 38 H 1.08998 * 109.47298 * 299.99310 * 14 13 11 39 39 H 1.08995 * 109.47677 * 59.99860 * 14 13 11 40 40 H 0.97008 * 120.00383 * 180.02562 * 18 17 15 41 41 H 1.08002 * 120.00166 * 179.97438 * 23 6 5 42 42 H 1.07996 * 120.00605 * 359.97438 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2680 2.0706 -1.1972 5 6 2.7246 3.3753 -1.1972 6 6 2.9541 4.0273 0.0000 7 6 3.4554 5.4485 0.0000 8 1 3.5755 5.7915 1.0276 9 6 2.4474 6.3448 -0.7223 10 6 4.8036 5.5137 -0.7205 11 6 5.3631 6.9090 -0.6140 12 8 4.7442 7.7669 -0.0208 13 7 6.5512 7.2035 -1.1781 14 6 7.0947 8.5600 -1.0750 15 6 8.4233 8.6240 -1.7835 16 1 8.8230 7.7422 -2.2621 17 6 9.1285 9.8081 -1.8205 18 7 8.6421 10.8817 -1.2372 19 14 10.7757 9.8871 -2.6980 20 1 11.0978 8.5540 -3.2673 21 1 10.7060 10.8885 -3.7925 22 1 11.8326 10.2820 -1.7324 23 6 2.7234 3.3758 1.1971 24 6 2.2627 2.0725 1.1971 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 2.0926 1.5598 -2.1325 31 1 2.9045 3.8845 -2.1325 32 1 2.3273 6.0019 -1.7499 33 1 1.4869 6.2984 -0.2090 34 1 2.8103 7.3727 -0.7227 35 1 5.4959 4.8087 -0.2603 36 1 4.6673 5.2560 -1.7707 37 1 7.0463 6.5173 -1.6522 38 1 6.4026 9.2648 -1.5360 39 1 7.2305 8.8183 -0.0249 40 1 9.1381 11.7150 -1.2636 41 1 2.9031 3.8851 2.1324 42 1 2.0824 1.5635 2.1325 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427611722.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:19 Heat of formation + Delta-G solvation = -48.537512 kcal Electronic energy + Delta-G solvation = -20235.763120 eV Core-core repulsion = 17179.184607 eV Total energy + Delta-G solvation = -3056.578513 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.93567 -38.78349 -35.77058 -34.16686 -33.02162 -32.31730 -30.99474 -29.06826 -28.12464 -26.47569 -24.40377 -22.88074 -22.70338 -21.54855 -20.12110 -19.36955 -17.18785 -16.36749 -15.81836 -15.58067 -15.13373 -14.92265 -14.87325 -14.25753 -13.93462 -13.91243 -13.66879 -13.41945 -13.09073 -12.88819 -12.66369 -12.22919 -12.05857 -11.86602 -11.71988 -11.53558 -11.30741 -11.08743 -11.02553 -10.92400 -10.86479 -10.65466 -10.52006 -10.30464 -9.37265 -8.98114 -8.94744 -8.72991 -8.53277 -7.85167 -6.16572 -4.23301 1.27216 1.34912 3.23337 3.30474 3.33589 3.41486 3.66555 4.12113 4.37279 4.56360 4.63250 4.87357 4.91338 4.94599 5.09414 5.14588 5.19538 5.26750 5.29129 5.40882 5.44537 5.52324 5.61451 5.70999 5.77614 5.80565 5.88460 5.90252 6.02387 6.03200 6.18209 6.30061 6.38108 6.52055 6.62597 6.71607 6.96089 7.32266 7.47376 7.52905 7.67885 7.97810 8.65505 8.79292 9.13767 9.43652 10.93660 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.039645 B = 0.002757 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.104442 B =10152.773160 C =10498.191923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.084 4.084 3 C -0.093 4.093 4 C -0.117 4.117 5 C -0.111 4.111 6 C -0.073 4.073 7 C -0.035 4.035 8 H 0.085 0.915 9 C -0.148 4.148 10 C -0.134 4.134 11 C 0.498 3.502 12 O -0.554 6.554 13 N -0.714 5.714 14 C 0.249 3.751 15 C -0.542 4.542 16 H 0.063 0.937 17 C 0.063 3.937 18 N -0.886 5.886 19 Si 0.903 3.097 20 H -0.272 1.272 21 H -0.282 1.282 22 H -0.282 1.282 23 C -0.114 4.114 24 C -0.117 4.117 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.118 0.882 31 H 0.122 0.878 32 H 0.047 0.953 33 H 0.049 0.951 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.390 0.610 38 H 0.026 0.974 39 H 0.026 0.974 40 H 0.265 0.735 41 H 0.122 0.878 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.693 -20.636 1.291 24.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.121 4.121 3 C -0.093 4.093 4 C -0.135 4.135 5 C -0.129 4.129 6 C -0.073 4.073 7 C -0.054 4.054 8 H 0.103 0.897 9 C -0.205 4.205 10 C -0.174 4.174 11 C 0.283 3.717 12 O -0.434 6.434 13 N -0.362 5.362 14 C 0.128 3.872 15 C -0.581 4.581 16 H 0.081 0.919 17 C -0.141 4.141 18 N -0.523 5.523 19 Si 0.731 3.269 20 H -0.196 1.196 21 H -0.208 1.208 22 H -0.208 1.208 23 C -0.132 4.132 24 C -0.135 4.135 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.136 0.864 31 H 0.140 0.860 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.102 0.898 35 H 0.105 0.895 36 H 0.106 0.894 37 H 0.223 0.777 38 H 0.044 0.956 39 H 0.044 0.956 40 H 0.075 0.925 41 H 0.140 0.860 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -14.072 -19.792 1.745 24.347 hybrid contribution 1.232 -0.185 -0.698 1.428 sum -12.840 -19.977 1.047 23.771 Atomic orbital electron populations 1.21748 0.94874 1.01508 1.02254 1.20521 0.96078 0.92882 1.02634 1.19845 0.99970 0.96190 0.93307 1.20983 1.00256 0.94934 0.97348 1.21023 0.99482 0.94545 0.97880 1.19998 0.98330 0.95862 0.93093 1.19873 0.93651 0.90441 1.01412 0.89654 1.21954 0.97904 1.01654 0.98950 1.21753 0.97350 0.95938 1.02389 1.20466 0.81866 0.89774 0.79600 1.90616 1.59490 1.49836 1.43479 1.46496 1.20035 1.15377 1.54340 1.19094 0.93301 0.77252 0.97549 1.21277 1.04084 0.96708 1.35987 0.91879 1.24958 0.98384 0.95350 0.95406 1.69984 1.38581 1.00869 1.42873 0.86367 0.83096 0.78181 0.79297 1.19643 1.20798 1.20796 1.21102 0.99648 0.94692 0.97753 1.20974 1.00272 0.94914 0.97359 0.92563 0.92566 0.92587 0.91231 0.91208 0.86397 0.86034 0.93373 0.93184 0.89775 0.89458 0.89448 0.77747 0.95582 0.95602 0.92519 0.86045 0.86414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.89 37.16 0.37 -0.61 16 2 C -0.08 -0.61 6.07 -27.88 -0.17 -0.78 16 3 C -0.09 -0.89 5.13 -104.62 -0.54 -1.43 16 4 C -0.12 -1.17 9.70 -39.58 -0.38 -1.55 16 5 C -0.11 -1.22 8.76 -39.58 -0.35 -1.57 16 6 C -0.07 -0.87 4.78 -104.62 -0.50 -1.37 16 7 C -0.03 -0.48 2.21 -91.77 -0.20 -0.68 16 8 H 0.09 1.26 7.69 -51.93 -0.40 0.87 16 9 C -0.15 -2.07 8.75 37.16 0.33 -1.74 16 10 C -0.13 -1.90 4.91 -27.88 -0.14 -2.04 16 11 C 0.50 9.75 7.55 -10.98 -0.08 9.66 16 12 O -0.55 -12.88 13.96 5.56 0.08 -12.80 16 13 N -0.71 -15.05 5.55 -61.47 -0.34 -15.39 16 14 C 0.25 6.62 5.43 -5.19 -0.03 6.59 16 15 C -0.54 -14.78 9.28 -34.44 -0.32 -15.10 16 16 H 0.06 1.61 7.60 -52.49 -0.40 1.22 16 17 C 0.06 1.74 5.46 -17.83 -0.10 1.65 16 18 N -0.89 -26.20 13.29 55.43 0.74 -25.46 16 19 Si 0.90 20.92 29.54 -169.99 -5.02 15.90 16 20 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 C -0.11 -1.28 9.67 -39.58 -0.38 -1.66 16 24 C -0.12 -1.17 9.70 -39.58 -0.38 -1.56 16 25 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 29 H 0.07 0.46 8.08 -51.93 -0.42 0.04 16 30 H 0.12 0.96 8.06 -52.49 -0.42 0.53 16 31 H 0.12 1.22 7.16 -52.49 -0.38 0.84 16 32 H 0.05 0.60 7.39 -51.93 -0.38 0.22 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.08 1.44 5.95 -51.93 -0.31 1.13 16 35 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.09 1.08 7.57 -51.93 -0.39 0.69 16 37 H 0.39 7.07 8.32 -40.82 -0.34 6.73 16 38 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 41 H 0.12 1.24 7.95 -52.49 -0.42 0.82 16 42 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 LS Contribution 348.17 15.07 5.25 5.25 Total: -1.00 -31.50 348.17 -8.98 -40.48 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -6.80 Total: 4.20 kcal Atomic # 6 Polarization: -9.30 SS G_CDS: -2.88 Total: -12.18 kcal Atomic # 7 Polarization: -41.24 SS G_CDS: 0.40 Total: -40.85 kcal Atomic # 8 Polarization: -12.88 SS G_CDS: 0.08 Total: -12.80 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.50 -8.98 -40.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427611722.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.059 kcal (2) G-P(sol) polarization free energy of solvation -31.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds