Wall clock time and date at job start Mon Mar 30 2020 02:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 C 1.38234 * 119.99770 * 269.72838 * 3 2 1 5 5 C 1.38235 * 119.99933 * 179.78838 * 4 3 2 6 6 C 1.38240 * 119.99615 * 0.44078 * 5 4 3 7 7 C 1.50703 * 119.99825 * 179.83444 * 6 5 4 8 8 H 1.08999 * 109.47338 * 179.97438 * 7 6 5 9 9 C 1.53002 * 109.47040 * 59.97520 * 7 6 5 10 10 C 1.53006 * 109.47008 * 299.98123 * 7 6 5 11 11 C 1.50704 * 109.46855 * 185.00302 * 10 7 6 12 12 O 1.21277 * 120.00348 * 359.97438 * 11 10 7 13 13 N 1.34776 * 119.99751 * 179.97438 * 11 10 7 14 14 C 1.46499 * 119.99646 * 179.97438 * 13 11 10 15 15 C 1.50710 * 109.46976 * 179.97438 * 14 13 11 16 16 H 1.08001 * 119.99505 * 359.97438 * 15 14 13 17 17 C 1.37870 * 119.99782 * 179.97438 * 15 14 13 18 18 N 1.31507 * 120.00550 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99631 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47424 * 0.02562 * 19 17 15 21 21 H 1.48508 * 109.47023 * 119.99990 * 19 17 15 22 22 H 1.48501 * 109.47517 * 239.99995 * 19 17 15 23 23 C 1.38227 * 120.00231 * 359.81118 * 6 5 4 24 24 C 1.38232 * 119.99860 * 90.00280 * 3 2 1 25 25 H 1.08992 * 109.47399 * 59.99914 * 1 2 3 26 26 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47194 * 299.99742 * 1 2 3 28 28 H 1.09002 * 109.47398 * 120.00078 * 2 1 3 29 29 H 1.09001 * 109.47194 * 240.00258 * 2 1 3 30 30 H 1.08001 * 120.00330 * 359.97438 * 4 3 2 31 31 H 1.08002 * 120.00360 * 180.27290 * 5 4 3 32 32 H 1.08996 * 109.47378 * 299.99872 * 9 7 6 33 33 H 1.09006 * 109.47111 * 60.00419 * 9 7 6 34 34 H 1.09004 * 109.47030 * 180.02562 * 9 7 6 35 35 H 1.08999 * 109.46955 * 304.99332 * 10 7 6 36 36 H 1.08993 * 109.47689 * 64.99776 * 10 7 6 37 37 H 0.96997 * 120.00295 * 359.97438 * 13 11 10 38 38 H 1.08998 * 109.47298 * 299.99310 * 14 13 11 39 39 H 1.08995 * 109.47677 * 59.99860 * 14 13 11 40 40 H 0.97008 * 120.00383 * 180.02562 * 18 17 15 41 41 H 1.08002 * 120.00166 * 179.97438 * 23 6 5 42 42 H 1.07996 * 120.00605 * 359.97438 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2680 2.0706 -1.1972 5 6 2.7246 3.3753 -1.1972 6 6 2.9541 4.0273 0.0000 7 6 3.4554 5.4485 0.0000 8 1 3.5755 5.7915 1.0276 9 6 2.4474 6.3448 -0.7223 10 6 4.8036 5.5137 -0.7205 11 6 5.3631 6.9090 -0.6140 12 8 4.7442 7.7669 -0.0208 13 7 6.5512 7.2035 -1.1781 14 6 7.0947 8.5600 -1.0750 15 6 8.4233 8.6240 -1.7835 16 1 8.8230 7.7422 -2.2621 17 6 9.1285 9.8081 -1.8205 18 7 8.6421 10.8817 -1.2372 19 14 10.7757 9.8871 -2.6980 20 1 11.0978 8.5540 -3.2673 21 1 10.7060 10.8885 -3.7925 22 1 11.8326 10.2820 -1.7324 23 6 2.7234 3.3758 1.1971 24 6 2.2627 2.0725 1.1971 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 2.0926 1.5598 -2.1325 31 1 2.9045 3.8845 -2.1325 32 1 2.3273 6.0019 -1.7499 33 1 1.4869 6.2984 -0.2090 34 1 2.8103 7.3727 -0.7227 35 1 5.4959 4.8087 -0.2603 36 1 4.6673 5.2560 -1.7707 37 1 7.0463 6.5173 -1.6522 38 1 6.4026 9.2648 -1.5360 39 1 7.2305 8.8183 -0.0249 40 1 9.1381 11.7150 -1.2636 41 1 2.9031 3.8851 2.1324 42 1 2.0824 1.5635 2.1325 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427611722.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:18 Heat of formation + Delta-G solvation = -66.635086 kcal Electronic energy + Delta-G solvation = -20236.547889 eV Core-core repulsion = 17179.184607 eV Total energy + Delta-G solvation = -3057.363283 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.02334 -40.13410 -36.83569 -36.00428 -34.34607 -33.86135 -31.76623 -30.34477 -29.32814 -28.14016 -25.31870 -24.49180 -23.65156 -22.54231 -21.42103 -20.66779 -18.90896 -17.76627 -17.11260 -16.82115 -16.62894 -16.26518 -15.92326 -15.84999 -14.96982 -14.74897 -14.51107 -14.46609 -14.35107 -14.11842 -13.97719 -13.80492 -13.49044 -13.06436 -12.86456 -12.78820 -12.68158 -12.31027 -12.25258 -12.21943 -12.02184 -11.78885 -11.56127 -11.47490 -11.44839 -10.81817 -10.61349 -9.78897 -9.75655 -9.35558 -8.29822 -6.46311 0.46747 0.56630 1.42594 1.43684 1.57243 1.81224 2.32552 2.61508 2.90211 3.05007 3.72764 3.80189 3.96492 4.07120 4.14457 4.21645 4.27891 4.39814 4.52893 4.56048 4.64446 4.68383 4.70000 4.76510 4.86401 5.00853 5.10642 5.12327 5.14267 5.20805 5.21641 5.24752 5.31143 5.38003 5.42559 5.51257 5.61641 5.72288 5.78998 5.82080 5.85828 6.18484 6.65494 6.94117 7.23376 7.53404 8.82557 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.039645 B = 0.002757 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.104442 B =10152.773160 C =10498.191923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.083 4.083 3 C -0.094 4.094 4 C -0.122 4.122 5 C -0.117 4.117 6 C -0.085 4.085 7 C -0.029 4.029 8 H 0.065 0.935 9 C -0.143 4.143 10 C -0.118 4.118 11 C 0.494 3.506 12 O -0.595 6.595 13 N -0.711 5.711 14 C 0.266 3.734 15 C -0.555 4.555 16 H 0.083 0.917 17 C 0.002 3.998 18 N -0.931 5.931 19 Si 0.985 3.015 20 H -0.253 1.253 21 H -0.279 1.279 22 H -0.279 1.279 23 C -0.126 4.126 24 C -0.123 4.123 25 H 0.051 0.949 26 H 0.069 0.931 27 H 0.050 0.950 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.138 0.862 31 H 0.131 0.869 32 H 0.064 0.936 33 H 0.056 0.944 34 H 0.047 0.953 35 H 0.109 0.891 36 H 0.115 0.885 37 H 0.408 0.592 38 H -0.013 1.013 39 H -0.014 1.014 40 H 0.268 0.732 41 H 0.122 0.878 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.235 -23.735 -0.062 27.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.120 4.120 3 C -0.094 4.094 4 C -0.140 4.140 5 C -0.135 4.135 6 C -0.085 4.085 7 C -0.048 4.048 8 H 0.084 0.916 9 C -0.201 4.201 10 C -0.158 4.158 11 C 0.282 3.718 12 O -0.477 6.477 13 N -0.361 5.361 14 C 0.143 3.857 15 C -0.593 4.593 16 H 0.101 0.899 17 C -0.198 4.198 18 N -0.570 5.570 19 Si 0.808 3.192 20 H -0.176 1.176 21 H -0.204 1.204 22 H -0.205 1.205 23 C -0.144 4.144 24 C -0.141 4.141 25 H 0.070 0.930 26 H 0.088 0.912 27 H 0.069 0.931 28 H 0.096 0.904 29 H 0.098 0.902 30 H 0.156 0.844 31 H 0.149 0.851 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.066 0.934 35 H 0.127 0.873 36 H 0.133 0.867 37 H 0.243 0.757 38 H 0.005 0.995 39 H 0.004 0.996 40 H 0.077 0.923 41 H 0.140 0.860 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -13.626 -22.946 0.384 26.689 hybrid contribution 0.978 0.745 -0.221 1.249 sum -12.648 -22.201 0.163 25.552 Atomic orbital electron populations 1.21736 0.94411 1.02311 1.01794 1.20575 0.96371 0.91491 1.03588 1.20184 0.98883 0.97264 0.93022 1.21254 0.99677 0.94628 0.98399 1.21164 0.99485 0.95099 0.97721 1.19788 0.99989 0.94714 0.94005 1.19745 0.93242 0.91803 1.00044 0.91624 1.21879 0.98265 0.99647 1.00262 1.21739 0.97691 0.91861 1.04503 1.21483 0.80748 0.91667 0.77881 1.90607 1.60361 1.51819 1.44910 1.46260 1.20920 1.13697 1.55235 1.18522 0.93047 0.79478 0.94663 1.21661 1.04083 0.97620 1.35898 0.89863 1.26083 1.02855 0.94785 0.96046 1.70144 1.40649 1.01747 1.44455 0.85106 0.77302 0.78978 0.77792 1.17630 1.20420 1.20461 1.21236 1.00079 0.95433 0.97692 1.21206 0.99888 0.94500 0.98488 0.92962 0.91176 0.93125 0.90401 0.90191 0.84447 0.85114 0.91674 0.92500 0.93388 0.87251 0.86653 0.75683 0.99515 0.99639 0.92268 0.85969 0.84788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.89 71.98 0.71 -0.85 16 2 C -0.08 -0.97 6.07 29.85 0.18 -0.79 16 3 C -0.09 -1.55 5.13 -19.87 -0.10 -1.65 16 4 C -0.12 -2.08 9.70 22.27 0.22 -1.86 16 5 C -0.12 -2.28 8.76 22.27 0.20 -2.09 16 6 C -0.08 -1.91 4.78 -19.87 -0.09 -2.01 16 7 C -0.03 -0.79 2.21 -11.54 -0.03 -0.82 16 8 H 0.07 2.00 7.69 -2.39 -0.02 1.99 16 9 C -0.14 -4.04 8.75 71.98 0.63 -3.41 16 10 C -0.12 -3.20 4.91 29.85 0.15 -3.05 16 11 C 0.49 19.68 7.55 87.66 0.66 20.35 16 12 O -0.59 -29.07 13.96 -3.02 -0.04 -29.11 16 13 N -0.71 -30.32 5.55 -466.78 -2.59 -32.91 16 14 C 0.27 14.77 5.43 85.64 0.46 15.23 16 15 C -0.55 -30.45 9.28 25.60 0.24 -30.22 16 16 H 0.08 4.13 7.60 -2.91 -0.02 4.11 16 17 C 0.00 0.10 5.46 84.65 0.46 0.56 16 18 N -0.93 -56.65 13.29 21.44 0.28 -56.37 16 19 Si 0.99 42.58 29.54 68.60 2.03 44.61 16 20 H -0.25 -10.08 7.11 99.48 0.71 -9.37 16 21 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 22 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 23 C -0.13 -2.69 9.67 22.27 0.22 -2.47 16 24 C -0.12 -2.22 9.70 22.27 0.22 -2.00 16 25 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 26 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 27 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.08 0.79 8.09 -2.39 -0.02 0.77 16 29 H 0.08 0.79 8.08 -2.39 -0.02 0.77 16 30 H 0.14 1.76 8.06 -2.91 -0.02 1.74 16 31 H 0.13 2.24 7.16 -2.91 -0.02 2.22 16 32 H 0.06 1.57 7.39 -2.39 -0.02 1.55 16 33 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 34 H 0.05 1.71 5.95 -2.39 -0.01 1.69 16 35 H 0.11 2.55 8.14 -2.39 -0.02 2.53 16 36 H 0.12 2.53 7.57 -2.39 -0.02 2.51 16 37 H 0.41 14.34 8.32 -92.71 -0.77 13.57 16 38 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 39 H -0.01 -0.90 8.14 -2.39 -0.02 -0.92 16 40 H 0.27 15.19 8.31 -92.70 -0.77 14.42 16 41 H 0.12 2.47 7.95 -2.91 -0.02 2.45 16 42 H 0.13 1.90 8.06 -2.91 -0.02 1.88 16 Total: -1.00 -70.91 348.17 4.02 -66.89 By element: Atomic # 1 Polarization: 21.75 SS G_CDS: 0.22 Total: 21.97 kcal Atomic # 6 Polarization: -19.19 SS G_CDS: 4.12 Total: -15.07 kcal Atomic # 7 Polarization: -86.98 SS G_CDS: -2.30 Total: -89.28 kcal Atomic # 8 Polarization: -29.07 SS G_CDS: -0.04 Total: -29.11 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.61 kcal Total: -70.91 4.02 -66.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427611722.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.253 kcal (2) G-P(sol) polarization free energy of solvation -70.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds