Wall clock time and date at job start Mon Mar 30 2020 02:08:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50690 * 109.47392 * 2 1 4 4 C 1.38237 * 120.00007 * 89.99741 * 3 2 1 5 5 C 1.38239 * 120.00041 * 179.97438 * 4 3 2 6 6 C 1.38235 * 120.00087 * 359.96056 * 5 4 3 7 7 C 1.50696 * 120.00262 * 180.02562 * 6 5 4 8 8 H 1.09000 * 109.46915 * 359.97438 * 7 6 5 9 9 C 1.53000 * 109.47535 * 119.99868 * 7 6 5 10 10 C 1.53004 * 109.47117 * 239.99708 * 7 6 5 11 11 C 1.50700 * 109.47208 * 174.99635 * 10 7 6 12 12 O 1.21283 * 119.99803 * 359.97438 * 11 10 7 13 13 N 1.34777 * 119.99675 * 180.27843 * 11 10 7 14 14 C 1.46497 * 119.99525 * 179.72583 * 13 11 10 15 15 C 1.50706 * 109.47174 * 179.97438 * 14 13 11 16 16 H 1.08003 * 119.99324 * 0.02562 * 15 14 13 17 17 C 1.37872 * 120.00250 * 179.97438 * 15 14 13 18 18 N 1.31511 * 120.00091 * 180.02562 * 17 15 14 19 19 Si 1.86801 * 120.00065 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.46927 * 89.99821 * 19 17 15 21 21 H 1.48498 * 109.47123 * 209.99895 * 19 17 15 22 22 H 1.48503 * 109.47167 * 329.99632 * 19 17 15 23 23 C 1.38235 * 119.99843 * 0.26946 * 6 5 4 24 24 C 1.38236 * 120.00095 * 269.97644 * 3 2 1 25 25 H 1.08994 * 109.46979 * 300.00411 * 1 2 3 26 26 H 1.09001 * 109.47014 * 59.99934 * 1 2 3 27 27 H 1.08997 * 109.47060 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47097 * 239.99784 * 2 1 3 29 29 H 1.09001 * 109.47014 * 120.00066 * 2 1 3 30 30 H 1.08000 * 119.99892 * 359.97438 * 4 3 2 31 31 H 1.08004 * 120.00274 * 179.97438 * 5 4 3 32 32 H 1.09003 * 109.47289 * 180.02562 * 9 7 6 33 33 H 1.09004 * 109.46667 * 299.99719 * 9 7 6 34 34 H 1.09000 * 109.47161 * 59.99977 * 9 7 6 35 35 H 1.09009 * 109.46730 * 54.99541 * 10 7 6 36 36 H 1.08998 * 109.46846 * 295.00086 * 10 7 6 37 37 H 0.97000 * 119.99894 * 359.71837 * 13 11 10 38 38 H 1.08995 * 109.47421 * 299.99467 * 14 13 11 39 39 H 1.09001 * 109.47621 * 60.00103 * 14 13 11 40 40 H 0.97004 * 120.00400 * 180.02562 * 18 17 15 41 41 H 1.07998 * 120.00075 * 179.73097 * 23 6 5 42 42 H 1.07994 * 120.00217 * 0.02562 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2628 2.0724 1.1972 5 6 2.7242 3.3755 1.1972 6 6 2.9559 4.0267 0.0000 7 6 3.4594 5.4470 0.0000 8 1 3.5796 5.7899 1.0277 9 6 4.8078 5.5103 -0.7203 10 6 2.4528 6.3449 -0.7223 11 6 2.8947 7.7818 -0.6159 12 8 3.9140 8.0603 -0.0206 13 7 2.1538 8.7578 -1.1771 14 6 2.5802 10.1552 -1.0686 15 6 1.5862 11.0401 -1.7758 16 1 0.7230 10.6050 -2.2575 17 6 1.7782 12.4050 -1.8069 18 7 0.9106 13.1772 -2.4236 19 14 3.2709 13.1575 -0.9732 20 1 4.3955 13.2271 -1.9404 21 1 2.9375 14.5258 -0.5022 22 1 3.6662 12.3177 0.1861 23 6 2.7210 3.3766 -1.1971 24 6 2.2633 2.0722 -1.1971 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 2.0823 1.5634 2.1325 31 1 2.9038 3.8848 2.1325 32 1 5.1721 6.5376 -0.7199 33 1 5.5249 4.8706 -0.2057 34 1 4.6871 5.1675 -1.7480 35 1 1.4705 6.2319 -0.2634 36 1 2.3984 6.0582 -1.7724 37 1 1.3384 8.5350 -1.6529 38 1 2.6351 10.4377 -0.0173 39 1 3.5617 10.2724 -1.5281 40 1 1.0458 14.1375 -2.4459 41 1 2.8979 3.8868 -2.1324 42 1 2.0833 1.5632 -2.1324 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427611723.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:22 Heat of formation + Delta-G solvation = -44.804018 kcal Electronic energy + Delta-G solvation = -20310.956576 eV Core-core repulsion = 17254.539959 eV Total energy + Delta-G solvation = -3056.416617 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.99320 -38.91899 -35.84040 -34.28586 -33.07017 -32.35515 -31.02506 -29.24787 -28.38849 -26.83488 -24.42829 -22.91320 -22.41528 -21.46776 -20.20241 -19.52047 -17.34613 -16.49955 -15.92980 -15.68333 -15.31380 -14.99393 -14.92017 -14.21716 -14.02948 -13.91230 -13.59101 -13.29383 -13.19196 -13.16239 -12.80493 -12.46649 -12.32281 -11.91938 -11.87824 -11.57126 -11.39006 -11.11997 -11.10052 -10.92641 -10.81073 -10.69863 -10.57564 -9.97104 -9.49569 -9.12041 -9.00307 -8.77785 -8.57319 -8.12701 -6.21671 -4.23877 1.23853 1.31858 3.24306 3.27844 3.33132 3.41567 3.62894 4.02092 4.33195 4.53647 4.60574 4.82749 4.85425 4.91733 5.06952 5.10541 5.13490 5.21035 5.26762 5.37375 5.41724 5.45273 5.60475 5.65765 5.70852 5.74033 5.84122 5.88306 5.98601 5.99382 6.11661 6.24270 6.33809 6.49348 6.54686 6.66092 6.81914 6.92749 7.07601 7.24708 7.40380 8.14028 8.53021 8.75396 8.95740 9.38667 10.90325 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.035827 B = 0.002951 C = 0.002831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.345090 B = 9487.381480 C = 9888.331800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.084 4.084 3 C -0.092 4.092 4 C -0.117 4.117 5 C -0.114 4.114 6 C -0.074 4.074 7 C -0.035 4.035 8 H 0.085 0.915 9 C -0.148 4.148 10 C -0.134 4.134 11 C 0.500 3.500 12 O -0.557 6.557 13 N -0.707 5.707 14 C 0.220 3.780 15 C -0.543 4.543 16 H 0.079 0.921 17 C 0.077 3.923 18 N -0.893 5.893 19 Si 0.877 3.123 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.261 1.261 23 C -0.111 4.111 24 C -0.117 4.117 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.118 0.882 31 H 0.121 0.879 32 H 0.082 0.918 33 H 0.050 0.950 34 H 0.048 0.952 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.396 0.604 38 H 0.024 0.976 39 H 0.020 0.980 40 H 0.267 0.733 41 H 0.122 0.878 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.387 -25.274 4.151 25.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.121 4.121 3 C -0.092 4.092 4 C -0.135 4.135 5 C -0.132 4.132 6 C -0.074 4.074 7 C -0.054 4.054 8 H 0.103 0.897 9 C -0.205 4.205 10 C -0.174 4.174 11 C 0.286 3.714 12 O -0.437 6.437 13 N -0.355 5.355 14 C 0.098 3.902 15 C -0.581 4.581 16 H 0.097 0.903 17 C -0.127 4.127 18 N -0.530 5.530 19 Si 0.704 3.296 20 H -0.199 1.199 21 H -0.209 1.209 22 H -0.185 1.185 23 C -0.129 4.129 24 C -0.135 4.135 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.136 0.864 31 H 0.139 0.861 32 H 0.101 0.899 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.230 0.770 38 H 0.042 0.958 39 H 0.038 0.962 40 H 0.077 0.923 41 H 0.140 0.860 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 2.057 -24.839 4.518 25.330 hybrid contribution 0.196 0.477 0.069 0.520 sum 2.253 -24.362 4.587 24.892 Atomic orbital electron populations 1.21752 0.94778 1.01553 1.02346 1.20521 0.96158 0.92839 1.02593 1.19854 0.99857 0.96215 0.93298 1.20979 1.00251 0.94916 0.97380 1.21095 0.99600 0.94760 0.97716 1.19970 0.98349 0.95946 0.93120 1.19871 0.94789 0.89362 1.01355 0.89658 1.21954 0.95557 1.03903 0.99066 1.21747 1.00439 0.92587 1.02627 1.20528 0.84223 0.87384 0.79310 1.90609 1.25413 1.84180 1.43470 1.46221 1.26568 1.08184 1.54546 1.19478 0.96082 0.77476 0.97207 1.21107 1.09527 0.91551 1.35950 0.90284 1.24805 0.96459 0.96847 0.94571 1.69882 1.35743 1.05047 1.42342 0.86808 0.83078 0.78862 0.80880 1.19862 1.20914 1.18509 1.21022 0.99404 0.94614 0.97861 1.20990 1.00206 0.94921 0.97378 0.92535 0.92496 0.92547 0.91224 0.91259 0.86394 0.86068 0.89901 0.93134 0.93282 0.89220 0.89226 0.77024 0.95766 0.96214 0.92270 0.86017 0.86355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.90 37.16 0.37 -0.61 16 2 C -0.08 -0.60 6.06 -27.89 -0.17 -0.77 16 3 C -0.09 -0.86 5.13 -104.63 -0.54 -1.40 16 4 C -0.12 -1.14 9.70 -39.58 -0.38 -1.52 16 5 C -0.11 -1.23 9.67 -39.58 -0.38 -1.61 16 6 C -0.07 -0.85 4.78 -104.63 -0.50 -1.35 16 7 C -0.03 -0.45 2.21 -91.77 -0.20 -0.66 16 8 H 0.09 1.20 7.69 -51.93 -0.40 0.80 16 9 C -0.15 -1.96 8.75 37.16 0.33 -1.64 16 10 C -0.13 -1.80 4.91 -27.88 -0.14 -1.94 16 11 C 0.50 9.27 7.55 -10.98 -0.08 9.18 16 12 O -0.56 -12.13 13.97 5.55 0.08 -12.05 16 13 N -0.71 -14.25 5.55 -61.47 -0.34 -14.59 16 14 C 0.22 5.42 4.50 -5.19 -0.02 5.39 16 15 C -0.54 -14.96 9.83 -34.44 -0.34 -15.30 16 16 H 0.08 2.26 7.84 -52.48 -0.41 1.85 16 17 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 18 N -0.89 -26.59 13.96 55.43 0.77 -25.82 16 19 Si 0.88 21.52 27.47 -169.99 -4.67 16.85 16 20 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.26 -6.36 6.54 56.52 0.37 -5.99 16 23 C -0.11 -1.18 8.76 -39.58 -0.35 -1.53 16 24 C -0.12 -1.13 9.70 -39.58 -0.38 -1.52 16 25 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 28 H 0.07 0.45 8.09 -51.93 -0.42 0.03 16 29 H 0.07 0.44 8.09 -51.93 -0.42 0.02 16 30 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 31 H 0.12 1.19 7.95 -52.48 -0.42 0.77 16 32 H 0.08 1.33 5.95 -51.93 -0.31 1.02 16 33 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.05 0.58 7.40 -51.93 -0.38 0.20 16 35 H 0.09 1.10 8.14 -51.92 -0.42 0.67 16 36 H 0.09 1.05 7.56 -51.93 -0.39 0.66 16 37 H 0.40 7.06 8.32 -40.82 -0.34 6.72 16 38 H 0.02 0.63 7.20 -51.93 -0.37 0.26 16 39 H 0.02 0.51 7.57 -51.93 -0.39 0.12 16 40 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 41 H 0.12 1.17 7.16 -52.49 -0.38 0.80 16 42 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 LS Contribution 344.57 15.07 5.19 5.19 Total: -1.00 -31.50 344.57 -8.62 -40.12 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -6.76 Total: 3.47 kcal Atomic # 6 Polarization: -10.28 SS G_CDS: -2.89 Total: -13.17 kcal Atomic # 7 Polarization: -40.84 SS G_CDS: 0.43 Total: -40.41 kcal Atomic # 8 Polarization: -12.13 SS G_CDS: 0.08 Total: -12.05 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.67 Total: 16.85 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.50 -8.62 -40.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427611723.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.684 kcal (2) G-P(sol) polarization free energy of solvation -31.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds