Wall clock time and date at job start Mon Mar 30 2020 02:08:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50690 * 109.47392 * 2 1 4 4 C 1.38237 * 120.00007 * 89.99741 * 3 2 1 5 5 C 1.38239 * 120.00041 * 179.97438 * 4 3 2 6 6 C 1.38235 * 120.00087 * 359.96056 * 5 4 3 7 7 C 1.50696 * 120.00262 * 180.02562 * 6 5 4 8 8 H 1.09000 * 109.46915 * 359.97438 * 7 6 5 9 9 C 1.53000 * 109.47535 * 119.99868 * 7 6 5 10 10 C 1.53004 * 109.47117 * 239.99708 * 7 6 5 11 11 C 1.50700 * 109.47208 * 174.99635 * 10 7 6 12 12 O 1.21283 * 119.99803 * 359.97438 * 11 10 7 13 13 N 1.34777 * 119.99675 * 180.27843 * 11 10 7 14 14 C 1.46497 * 119.99525 * 179.72583 * 13 11 10 15 15 C 1.50706 * 109.47174 * 179.97438 * 14 13 11 16 16 H 1.08003 * 119.99324 * 0.02562 * 15 14 13 17 17 C 1.37872 * 120.00250 * 179.97438 * 15 14 13 18 18 N 1.31511 * 120.00091 * 180.02562 * 17 15 14 19 19 Si 1.86801 * 120.00065 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.46927 * 89.99821 * 19 17 15 21 21 H 1.48498 * 109.47123 * 209.99895 * 19 17 15 22 22 H 1.48503 * 109.47167 * 329.99632 * 19 17 15 23 23 C 1.38235 * 119.99843 * 0.26946 * 6 5 4 24 24 C 1.38236 * 120.00095 * 269.97644 * 3 2 1 25 25 H 1.08994 * 109.46979 * 300.00411 * 1 2 3 26 26 H 1.09001 * 109.47014 * 59.99934 * 1 2 3 27 27 H 1.08997 * 109.47060 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47097 * 239.99784 * 2 1 3 29 29 H 1.09001 * 109.47014 * 120.00066 * 2 1 3 30 30 H 1.08000 * 119.99892 * 359.97438 * 4 3 2 31 31 H 1.08004 * 120.00274 * 179.97438 * 5 4 3 32 32 H 1.09003 * 109.47289 * 180.02562 * 9 7 6 33 33 H 1.09004 * 109.46667 * 299.99719 * 9 7 6 34 34 H 1.09000 * 109.47161 * 59.99977 * 9 7 6 35 35 H 1.09009 * 109.46730 * 54.99541 * 10 7 6 36 36 H 1.08998 * 109.46846 * 295.00086 * 10 7 6 37 37 H 0.97000 * 119.99894 * 359.71837 * 13 11 10 38 38 H 1.08995 * 109.47421 * 299.99467 * 14 13 11 39 39 H 1.09001 * 109.47621 * 60.00103 * 14 13 11 40 40 H 0.97004 * 120.00400 * 180.02562 * 18 17 15 41 41 H 1.07998 * 120.00075 * 179.73097 * 23 6 5 42 42 H 1.07994 * 120.00217 * 0.02562 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2628 2.0724 1.1972 5 6 2.7242 3.3755 1.1972 6 6 2.9559 4.0267 0.0000 7 6 3.4594 5.4470 0.0000 8 1 3.5796 5.7899 1.0277 9 6 4.8078 5.5103 -0.7203 10 6 2.4528 6.3449 -0.7223 11 6 2.8947 7.7818 -0.6159 12 8 3.9140 8.0603 -0.0206 13 7 2.1538 8.7578 -1.1771 14 6 2.5802 10.1552 -1.0686 15 6 1.5862 11.0401 -1.7758 16 1 0.7230 10.6050 -2.2575 17 6 1.7782 12.4050 -1.8069 18 7 0.9106 13.1772 -2.4236 19 14 3.2709 13.1575 -0.9732 20 1 4.3955 13.2271 -1.9404 21 1 2.9375 14.5258 -0.5022 22 1 3.6662 12.3177 0.1861 23 6 2.7210 3.3766 -1.1971 24 6 2.2633 2.0722 -1.1971 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 2.0823 1.5634 2.1325 31 1 2.9038 3.8848 2.1325 32 1 5.1721 6.5376 -0.7199 33 1 5.5249 4.8706 -0.2057 34 1 4.6871 5.1675 -1.7480 35 1 1.4705 6.2319 -0.2634 36 1 2.3984 6.0582 -1.7724 37 1 1.3384 8.5350 -1.6529 38 1 2.6351 10.4377 -0.0173 39 1 3.5617 10.2724 -1.5281 40 1 1.0458 14.1375 -2.4459 41 1 2.8979 3.8868 -2.1324 42 1 2.0833 1.5632 -2.1324 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427611723.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:22 Heat of formation + Delta-G solvation = -62.892210 kcal Electronic energy + Delta-G solvation = -20311.740938 eV Core-core repulsion = 17254.539959 eV Total energy + Delta-G solvation = -3057.200979 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.04684 -40.15918 -36.85661 -36.01325 -34.40665 -33.86994 -31.76654 -30.68816 -29.43732 -28.29621 -25.24651 -24.10670 -23.65595 -22.51796 -21.49190 -20.68129 -19.12204 -17.90817 -17.16774 -16.85309 -16.59396 -16.31282 -15.88041 -15.84454 -15.02056 -14.79018 -14.78128 -14.48554 -14.33456 -14.14791 -14.05943 -13.84965 -13.71058 -13.09611 -13.01078 -12.70419 -12.63391 -12.31216 -12.24796 -12.02993 -11.93484 -11.78764 -11.66582 -11.57128 -11.46831 -10.92504 -10.66458 -9.88893 -9.75787 -9.35612 -8.40762 -6.47714 0.46597 0.56469 1.31895 1.34107 1.46698 1.76722 2.27253 2.49861 2.89607 2.94601 3.71030 3.80338 3.96244 4.06734 4.14231 4.21415 4.25958 4.39394 4.52661 4.56027 4.64049 4.68509 4.70853 4.76138 4.79992 4.86422 5.03354 5.04707 5.10622 5.12283 5.20688 5.22027 5.26316 5.31112 5.38200 5.42644 5.56436 5.62553 5.78884 5.81902 6.08654 6.18373 6.53584 6.86982 7.15416 7.44505 8.74041 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.035827 B = 0.002951 C = 0.002831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.345090 B = 9487.381480 C = 9888.331800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.083 4.083 3 C -0.094 4.094 4 C -0.124 4.124 5 C -0.126 4.126 6 C -0.085 4.085 7 C -0.029 4.029 8 H 0.069 0.931 9 C -0.144 4.144 10 C -0.121 4.121 11 C 0.499 3.501 12 O -0.589 6.589 13 N -0.709 5.709 14 C 0.232 3.768 15 C -0.547 4.547 16 H 0.059 0.941 17 C 0.025 3.975 18 N -0.932 5.932 19 Si 0.938 3.062 20 H -0.265 1.265 21 H -0.273 1.273 22 H -0.261 1.261 23 C -0.117 4.117 24 C -0.123 4.123 25 H 0.050 0.950 26 H 0.051 0.949 27 H 0.069 0.931 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.134 0.866 31 H 0.124 0.876 32 H 0.051 0.949 33 H 0.056 0.944 34 H 0.063 0.937 35 H 0.108 0.892 36 H 0.114 0.886 37 H 0.408 0.592 38 H 0.011 0.989 39 H 0.011 0.989 40 H 0.272 0.728 41 H 0.131 0.869 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.547 -27.379 4.268 27.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.120 4.120 3 C -0.094 4.094 4 C -0.141 4.141 5 C -0.144 4.144 6 C -0.085 4.085 7 C -0.048 4.048 8 H 0.087 0.913 9 C -0.201 4.201 10 C -0.161 4.161 11 C 0.287 3.713 12 O -0.471 6.471 13 N -0.359 5.359 14 C 0.108 3.892 15 C -0.585 4.585 16 H 0.077 0.923 17 C -0.175 4.175 18 N -0.570 5.570 19 Si 0.762 3.238 20 H -0.190 1.190 21 H -0.198 1.198 22 H -0.185 1.185 23 C -0.135 4.135 24 C -0.141 4.141 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.088 0.912 28 H 0.097 0.903 29 H 0.096 0.904 30 H 0.152 0.848 31 H 0.142 0.858 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.126 0.874 36 H 0.132 0.868 37 H 0.243 0.757 38 H 0.029 0.971 39 H 0.029 0.971 40 H 0.082 0.918 41 H 0.149 0.851 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 2.202 -26.975 4.630 27.458 hybrid contribution 0.100 1.031 0.024 1.037 sum 2.303 -25.943 4.654 26.458 Atomic orbital electron populations 1.21739 0.94429 1.02299 1.01827 1.20570 0.96350 0.91546 1.03542 1.20180 0.98901 0.97248 0.93057 1.21213 0.99903 0.94595 0.98437 1.21243 0.99938 0.95443 0.97740 1.19803 0.99779 0.95046 0.93909 1.19754 0.94466 0.90402 1.00181 0.91299 1.21885 0.95970 1.02018 1.00198 1.21750 1.01231 0.88580 1.04514 1.21386 0.83221 0.88902 0.77746 1.90601 1.26879 1.85000 1.44637 1.46104 1.27483 1.06843 1.55456 1.19072 0.94834 0.79649 0.95677 1.21312 1.09380 0.92169 1.35601 0.92328 1.25617 0.99193 0.97484 0.95210 1.69983 1.37617 1.05621 1.43824 0.85844 0.79774 0.78278 0.79908 1.18960 1.19812 1.18522 1.21167 0.99412 0.95148 0.97796 1.21254 0.99753 0.94700 0.98371 0.93089 0.92977 0.91217 0.90259 0.90388 0.84802 0.85812 0.92984 0.92503 0.91821 0.87383 0.86779 0.75658 0.97118 0.97120 0.91848 0.85147 0.84582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.90 71.98 0.71 -0.88 16 2 C -0.08 -0.95 6.06 29.85 0.18 -0.77 16 3 C -0.09 -1.53 5.13 -19.87 -0.10 -1.63 16 4 C -0.12 -2.16 9.70 22.27 0.22 -1.94 16 5 C -0.13 -2.54 9.67 22.27 0.22 -2.33 16 6 C -0.09 -1.82 4.78 -19.87 -0.09 -1.92 16 7 C -0.03 -0.72 2.21 -11.54 -0.03 -0.75 16 8 H 0.07 1.93 7.69 -2.39 -0.02 1.91 16 9 C -0.14 -3.71 8.75 71.98 0.63 -3.08 16 10 C -0.12 -3.06 4.91 29.85 0.15 -2.92 16 11 C 0.50 18.22 7.55 87.66 0.66 18.88 16 12 O -0.59 -25.82 13.97 -3.04 -0.04 -25.86 16 13 N -0.71 -28.33 5.55 -466.79 -2.59 -30.92 16 14 C 0.23 11.44 4.50 85.64 0.39 11.83 16 15 C -0.55 -30.41 9.83 25.60 0.25 -30.16 16 16 H 0.06 3.42 7.84 -2.91 -0.02 3.40 16 17 C 0.03 1.43 5.47 84.65 0.46 1.90 16 18 N -0.93 -55.96 13.96 21.45 0.30 -55.66 16 19 Si 0.94 44.41 27.47 68.60 1.88 46.29 16 20 H -0.26 -12.10 7.11 99.48 0.71 -11.40 16 21 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 22 H -0.26 -12.27 6.54 99.48 0.65 -11.62 16 23 C -0.12 -2.22 8.76 22.27 0.20 -2.03 16 24 C -0.12 -2.07 9.70 22.27 0.22 -1.85 16 25 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 26 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.08 0.78 8.09 -2.39 -0.02 0.76 16 29 H 0.08 0.77 8.09 -2.39 -0.02 0.76 16 30 H 0.13 1.82 8.06 -2.91 -0.02 1.80 16 31 H 0.12 2.33 7.95 -2.91 -0.02 2.31 16 32 H 0.05 1.68 5.95 -2.39 -0.01 1.66 16 33 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 34 H 0.06 1.42 7.40 -2.39 -0.02 1.40 16 35 H 0.11 2.40 8.14 -2.38 -0.02 2.38 16 36 H 0.11 2.38 7.56 -2.39 -0.02 2.36 16 37 H 0.41 14.27 8.32 -92.71 -0.77 13.50 16 38 H 0.01 0.57 7.20 -2.39 -0.02 0.55 16 39 H 0.01 0.56 7.57 -2.39 -0.02 0.54 16 40 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 41 H 0.13 2.16 7.16 -2.91 -0.02 2.14 16 42 H 0.14 1.75 8.06 -2.91 -0.02 1.72 16 Total: -1.00 -67.54 344.57 3.77 -63.77 By element: Atomic # 1 Polarization: 19.86 SS G_CDS: 0.17 Total: 20.03 kcal Atomic # 6 Polarization: -21.70 SS G_CDS: 4.05 Total: -17.65 kcal Atomic # 7 Polarization: -84.29 SS G_CDS: -2.29 Total: -86.58 kcal Atomic # 8 Polarization: -25.82 SS G_CDS: -0.04 Total: -25.86 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 1.88 Total: 46.29 kcal Total: -67.54 3.77 -63.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427611723.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.878 kcal (2) G-P(sol) polarization free energy of solvation -67.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds