Wall clock time and date at job start Mon Mar 30 2020 02:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47467 * 2 1 4 4 C 1.52997 * 109.47056 * 240.00044 * 2 1 3 5 5 C 1.52997 * 109.47298 * 59.99877 * 4 2 1 6 6 C 1.50698 * 109.47569 * 179.97438 * 5 4 2 7 7 O 1.21280 * 119.99607 * 0.02562 * 6 5 4 8 8 N 1.34769 * 120.00261 * 179.97438 * 6 5 4 9 9 C 1.46505 * 120.00017 * 180.02562 * 8 6 5 10 10 C 1.50706 * 109.46985 * 180.02562 * 9 8 6 11 11 H 1.07991 * 119.99989 * 359.97438 * 10 9 8 12 12 C 1.37879 * 119.99518 * 179.97438 * 10 9 8 13 13 N 1.31507 * 120.00161 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 119.99565 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.47184 * 0.02562 * 14 12 10 16 16 H 1.48500 * 109.46958 * 120.00143 * 14 12 10 17 17 H 1.48504 * 109.47377 * 240.00206 * 14 12 10 18 18 C 1.50706 * 109.47428 * 120.00093 * 2 1 3 19 19 C 1.38237 * 119.99761 * 300.00365 * 18 2 1 20 20 C 1.38235 * 119.99712 * 179.97438 * 19 18 2 21 21 C 1.38234 * 120.00220 * 359.94731 * 20 19 18 22 22 C 1.38233 * 120.00037 * 0.28719 * 21 20 19 23 23 C 1.38234 * 120.00191 * 119.97467 * 18 2 1 24 24 H 1.09007 * 109.46732 * 299.99668 * 1 2 3 25 25 H 1.08992 * 109.46964 * 59.99919 * 1 2 3 26 26 H 1.08999 * 109.47201 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47368 * 179.97438 * 3 2 1 28 28 H 1.09002 * 109.46902 * 300.00766 * 3 2 1 29 29 H 1.09004 * 109.47125 * 59.99963 * 3 2 1 30 30 H 1.09006 * 109.47161 * 180.02562 * 4 2 1 31 31 H 1.08999 * 109.47108 * 300.00048 * 4 2 1 32 32 H 1.08998 * 109.47349 * 300.00486 * 5 4 2 33 33 H 1.09007 * 109.46746 * 60.00319 * 5 4 2 34 34 H 0.96997 * 120.00116 * 0.02562 * 8 6 5 35 35 H 1.09006 * 109.46966 * 300.00047 * 9 8 6 36 36 H 1.08999 * 109.47276 * 59.99975 * 9 8 6 37 37 H 0.97007 * 120.00158 * 179.97438 * 13 12 10 38 38 H 1.08005 * 120.00088 * 359.96779 * 19 18 2 39 39 H 1.07999 * 119.99770 * 179.97438 * 20 19 18 40 40 H 1.08002 * 119.99744 * 180.02562 * 21 20 19 41 41 H 1.07998 * 120.00395 * 179.72811 * 22 21 20 42 42 H 1.07999 * 119.99990 * 0.02562 * 23 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5300 0.0000 -2.4985 6 6 2.0328 -0.7100 -3.7289 7 8 2.7300 -1.6961 -3.6177 8 7 1.7068 -0.2498 -4.9530 9 6 2.1952 -0.9404 -6.1492 10 6 1.6929 -0.2299 -7.3797 11 1 1.0717 0.6479 -7.2805 12 6 2.0265 -0.7006 -8.6319 13 7 2.7833 -1.7693 -8.7526 14 14 1.4033 0.1796 -10.1571 15 1 0.5779 1.3461 -9.7529 16 1 2.5580 0.6472 -10.9653 17 1 0.5790 -0.7542 -10.9656 18 6 2.0324 -0.7104 1.2305 19 6 1.6984 -0.2382 2.4860 20 6 2.1588 -0.8902 3.6147 21 6 2.9523 -2.0150 3.4878 22 6 3.2903 -2.4844 2.2323 23 6 2.8267 -1.8346 1.1036 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6766 1.9563 -0.8899 29 1 1.6768 1.9564 0.8900 30 1 3.1300 -0.7216 -1.2490 31 1 1.6766 -1.7489 -1.2492 32 1 0.4400 0.0001 -2.4984 33 1 1.8934 1.0277 -2.4984 34 1 1.1489 0.5386 -5.0420 35 1 3.2852 -0.9400 -6.1494 36 1 1.8322 -1.9682 -6.1490 37 1 3.0177 -2.1007 -9.6336 38 1 1.0778 0.6402 2.5851 39 1 1.8982 -0.5210 4.5956 40 1 3.3117 -2.5245 4.3697 41 1 3.9138 -3.3606 2.1332 42 1 3.0876 -2.2036 0.1227 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427631910.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:09 Heat of formation + Delta-G solvation = -41.221433 kcal Electronic energy + Delta-G solvation = -20576.501826 eV Core-core repulsion = 17520.240562 eV Total energy + Delta-G solvation = -3056.261264 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.11518 -38.74060 -36.67800 -34.14932 -32.32978 -31.50514 -30.91402 -29.38316 -27.38291 -27.32132 -25.06989 -22.96335 -22.44405 -21.67753 -19.65966 -18.79261 -17.51057 -16.72111 -15.73989 -15.32711 -15.24506 -15.03625 -14.85194 -14.35386 -14.10111 -13.77094 -13.66134 -13.42770 -13.23326 -12.62261 -12.46334 -12.30095 -11.98856 -11.93900 -11.62371 -11.48338 -11.42718 -11.19206 -10.94954 -10.90072 -10.57126 -10.56058 -10.41449 -10.30127 -9.37015 -8.99001 -8.97550 -8.76877 -8.73130 -7.84899 -6.16326 -4.23066 1.28390 1.32702 3.23353 3.30404 3.33486 3.43871 3.70732 4.09982 4.36187 4.49493 4.68639 4.89880 4.93932 4.99983 5.02561 5.17879 5.19777 5.34410 5.37803 5.39829 5.49733 5.57084 5.58687 5.72795 5.79555 5.88412 5.89757 5.96584 6.03413 6.03674 6.13365 6.35316 6.36874 6.42592 6.46703 6.61751 6.93509 7.33069 7.47725 7.53483 7.68296 7.98241 8.66546 8.79857 9.15067 9.43927 10.93981 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.041309 B = 0.002922 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.656944 B = 9579.472539 C =10055.460043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.027 4.027 3 C -0.141 4.141 4 C -0.092 4.092 5 C -0.145 4.145 6 C 0.495 3.505 7 O -0.559 6.559 8 N -0.715 5.715 9 C 0.248 3.752 10 C -0.542 4.542 11 H 0.063 0.937 12 C 0.063 3.937 13 N -0.886 5.886 14 Si 0.903 3.097 15 H -0.272 1.272 16 H -0.282 1.282 17 H -0.282 1.282 18 C -0.065 4.065 19 C -0.117 4.117 20 C -0.123 4.123 21 C -0.130 4.130 22 C -0.119 4.119 23 C -0.118 4.118 24 H 0.054 0.946 25 H 0.064 0.936 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.064 0.936 29 H 0.054 0.946 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.390 0.610 35 H 0.026 0.974 36 H 0.026 0.974 37 H 0.265 0.735 38 H 0.119 0.881 39 H 0.117 0.883 40 H 0.117 0.883 41 H 0.120 0.880 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.613 5.103 22.740 23.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.028 4.028 3 C -0.198 4.198 4 C -0.130 4.130 5 C -0.185 4.185 6 C 0.281 3.719 7 O -0.439 6.439 8 N -0.363 5.363 9 C 0.128 3.872 10 C -0.580 4.580 11 H 0.081 0.919 12 C -0.141 4.141 13 N -0.523 5.523 14 Si 0.731 3.269 15 H -0.196 1.196 16 H -0.208 1.208 17 H -0.208 1.208 18 C -0.065 4.065 19 C -0.135 4.135 20 C -0.141 4.141 21 C -0.148 4.148 22 C -0.137 4.137 23 C -0.136 4.136 24 H 0.073 0.927 25 H 0.083 0.917 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.083 0.917 29 H 0.073 0.927 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.222 0.778 35 H 0.044 0.956 36 H 0.044 0.956 37 H 0.075 0.925 38 H 0.137 0.863 39 H 0.135 0.865 40 H 0.135 0.865 41 H 0.138 0.862 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -3.021 4.268 22.641 23.236 hybrid contribution -0.523 0.740 -0.943 1.307 sum -3.544 5.007 21.698 22.548 Atomic orbital electron populations 1.21956 0.93703 1.02251 1.01909 1.19564 0.95722 0.95197 0.92272 1.21956 1.01434 0.94516 1.01910 1.21446 1.01445 0.99238 0.90887 1.21818 1.02317 1.00769 0.93576 1.20570 0.81196 0.85101 0.85082 1.90644 1.39101 1.27064 1.87102 1.46485 1.51834 1.31254 1.06742 1.19091 0.95257 0.92860 0.80031 1.21274 1.33020 1.13122 0.90615 0.91877 1.24962 0.94869 0.95002 0.99267 1.69986 1.35751 1.22532 1.24052 0.86367 0.78626 0.79494 0.82457 1.19639 1.20800 1.20794 1.19863 0.96987 0.95367 0.94239 1.20964 1.00488 1.00080 0.92002 1.21087 0.98552 0.96183 0.98310 1.21117 0.99189 0.97106 0.97374 1.21193 0.99916 0.99950 0.92606 1.21384 0.97413 0.95393 0.99436 0.92687 0.91730 0.92386 0.92386 0.91725 0.92694 0.90889 0.90893 0.89288 0.89296 0.77773 0.95638 0.95636 0.92518 0.86330 0.86452 0.86496 0.86185 0.84995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 7.93 37.16 0.29 -1.02 16 2 C -0.03 -0.29 0.63 -155.66 -0.10 -0.38 16 3 C -0.14 -1.32 7.93 37.16 0.29 -1.02 16 4 C -0.09 -1.20 2.22 -26.73 -0.06 -1.26 16 5 C -0.14 -1.96 4.99 -27.89 -0.14 -2.10 16 6 C 0.50 9.78 7.83 -10.99 -0.09 9.69 16 7 O -0.56 -13.39 15.98 5.56 0.09 -13.30 16 8 N -0.72 -15.07 5.55 -61.47 -0.34 -15.41 16 9 C 0.25 6.65 5.43 -5.19 -0.03 6.62 16 10 C -0.54 -14.79 9.28 -34.44 -0.32 -15.11 16 11 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 12 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 13 N -0.89 -26.27 13.29 55.43 0.74 -25.54 16 14 Si 0.90 20.91 29.54 -169.99 -5.02 15.89 16 15 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 16 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 17 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 18 C -0.06 -0.71 4.76 -104.62 -0.50 -1.21 16 19 C -0.12 -1.15 8.71 -39.58 -0.34 -1.49 16 20 C -0.12 -1.14 10.05 -39.58 -0.40 -1.54 16 21 C -0.13 -1.23 10.05 -39.58 -0.40 -1.63 16 22 C -0.12 -1.25 10.05 -39.58 -0.40 -1.64 16 23 C -0.12 -1.39 8.98 -39.58 -0.36 -1.74 16 24 H 0.05 0.45 7.39 -51.92 -0.38 0.06 16 25 H 0.06 0.56 6.43 -51.93 -0.33 0.23 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.56 6.43 -51.93 -0.33 0.23 16 29 H 0.05 0.45 7.39 -51.93 -0.38 0.06 16 30 H 0.07 1.04 7.47 -51.93 -0.39 0.65 16 31 H 0.07 1.04 7.47 -51.93 -0.39 0.65 16 32 H 0.09 1.04 6.43 -51.93 -0.33 0.70 16 33 H 0.09 1.04 6.43 -51.92 -0.33 0.70 16 34 H 0.39 6.99 8.32 -40.82 -0.34 6.65 16 35 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 38 H 0.12 0.97 7.10 -52.48 -0.37 0.59 16 39 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 40 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 41 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 42 H 0.13 1.62 5.90 -52.49 -0.31 1.31 16 LS Contribution 339.37 15.07 5.11 5.11 Total: -1.00 -32.29 339.37 -8.45 -40.74 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -6.39 Total: 4.69 kcal Atomic # 6 Polarization: -9.55 SS G_CDS: -2.63 Total: -12.18 kcal Atomic # 7 Polarization: -41.34 SS G_CDS: 0.40 Total: -40.95 kcal Atomic # 8 Polarization: -13.39 SS G_CDS: 0.09 Total: -13.30 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.29 -8.45 -40.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427631910.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.485 kcal (2) G-P(sol) polarization free energy of solvation -32.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds