Wall clock time and date at job start Mon Mar 30 2020 02:47:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47467 * 2 1 4 4 C 1.52997 * 109.47056 * 240.00044 * 2 1 3 5 5 C 1.52997 * 109.47298 * 59.99877 * 4 2 1 6 6 C 1.50698 * 109.47569 * 179.97438 * 5 4 2 7 7 O 1.21280 * 119.99607 * 0.02562 * 6 5 4 8 8 N 1.34769 * 120.00261 * 179.97438 * 6 5 4 9 9 C 1.46505 * 120.00017 * 180.02562 * 8 6 5 10 10 C 1.50706 * 109.46985 * 180.02562 * 9 8 6 11 11 H 1.07991 * 119.99989 * 359.97438 * 10 9 8 12 12 C 1.37879 * 119.99518 * 179.97438 * 10 9 8 13 13 N 1.31507 * 120.00161 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 119.99565 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.47184 * 0.02562 * 14 12 10 16 16 H 1.48500 * 109.46958 * 120.00143 * 14 12 10 17 17 H 1.48504 * 109.47377 * 240.00206 * 14 12 10 18 18 C 1.50706 * 109.47428 * 120.00093 * 2 1 3 19 19 C 1.38237 * 119.99761 * 300.00365 * 18 2 1 20 20 C 1.38235 * 119.99712 * 179.97438 * 19 18 2 21 21 C 1.38234 * 120.00220 * 359.94731 * 20 19 18 22 22 C 1.38233 * 120.00037 * 0.28719 * 21 20 19 23 23 C 1.38234 * 120.00191 * 119.97467 * 18 2 1 24 24 H 1.09007 * 109.46732 * 299.99668 * 1 2 3 25 25 H 1.08992 * 109.46964 * 59.99919 * 1 2 3 26 26 H 1.08999 * 109.47201 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47368 * 179.97438 * 3 2 1 28 28 H 1.09002 * 109.46902 * 300.00766 * 3 2 1 29 29 H 1.09004 * 109.47125 * 59.99963 * 3 2 1 30 30 H 1.09006 * 109.47161 * 180.02562 * 4 2 1 31 31 H 1.08999 * 109.47108 * 300.00048 * 4 2 1 32 32 H 1.08998 * 109.47349 * 300.00486 * 5 4 2 33 33 H 1.09007 * 109.46746 * 60.00319 * 5 4 2 34 34 H 0.96997 * 120.00116 * 0.02562 * 8 6 5 35 35 H 1.09006 * 109.46966 * 300.00047 * 9 8 6 36 36 H 1.08999 * 109.47276 * 59.99975 * 9 8 6 37 37 H 0.97007 * 120.00158 * 179.97438 * 13 12 10 38 38 H 1.08005 * 120.00088 * 359.96779 * 19 18 2 39 39 H 1.07999 * 119.99770 * 179.97438 * 20 19 18 40 40 H 1.08002 * 119.99744 * 180.02562 * 21 20 19 41 41 H 1.07998 * 120.00395 * 179.72811 * 22 21 20 42 42 H 1.07999 * 119.99990 * 0.02562 * 23 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5300 0.0000 -2.4985 6 6 2.0328 -0.7100 -3.7289 7 8 2.7300 -1.6961 -3.6177 8 7 1.7068 -0.2498 -4.9530 9 6 2.1952 -0.9404 -6.1492 10 6 1.6929 -0.2299 -7.3797 11 1 1.0717 0.6479 -7.2805 12 6 2.0265 -0.7006 -8.6319 13 7 2.7833 -1.7693 -8.7526 14 14 1.4033 0.1796 -10.1571 15 1 0.5779 1.3461 -9.7529 16 1 2.5580 0.6472 -10.9653 17 1 0.5790 -0.7542 -10.9656 18 6 2.0324 -0.7104 1.2305 19 6 1.6984 -0.2382 2.4860 20 6 2.1588 -0.8902 3.6147 21 6 2.9523 -2.0150 3.4878 22 6 3.2903 -2.4844 2.2323 23 6 2.8267 -1.8346 1.1036 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6766 1.9563 -0.8899 29 1 1.6768 1.9564 0.8900 30 1 3.1300 -0.7216 -1.2490 31 1 1.6766 -1.7489 -1.2492 32 1 0.4400 0.0001 -2.4984 33 1 1.8934 1.0277 -2.4984 34 1 1.1489 0.5386 -5.0420 35 1 3.2852 -0.9400 -6.1494 36 1 1.8322 -1.9682 -6.1490 37 1 3.0177 -2.1007 -9.6336 38 1 1.0778 0.6402 2.5851 39 1 1.8982 -0.5210 4.5956 40 1 3.3117 -2.5245 4.3697 41 1 3.9138 -3.3606 2.1332 42 1 3.0876 -2.2036 0.1227 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427631910.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:08 Heat of formation + Delta-G solvation = -60.834408 kcal Electronic energy + Delta-G solvation = -20577.352308 eV Core-core repulsion = 17520.240562 eV Total energy + Delta-G solvation = -3057.111746 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.07771 -40.23250 -37.61055 -36.12080 -34.34918 -32.55819 -31.75659 -30.31207 -29.20339 -28.09502 -26.31085 -24.53058 -23.44134 -22.76257 -21.30617 -19.68719 -19.04395 -17.98490 -17.30311 -17.00643 -16.69421 -16.09610 -15.86786 -15.74475 -15.28186 -14.91896 -14.51738 -14.46172 -14.32040 -14.14202 -13.84808 -13.71394 -13.18992 -13.18062 -12.89225 -12.76560 -12.60917 -12.37068 -12.22476 -12.19292 -12.04730 -11.61617 -11.47458 -11.35761 -11.28550 -10.82346 -10.70465 -9.81393 -9.76820 -9.53552 -8.30004 -6.46729 0.51803 0.54646 1.42719 1.44004 1.57574 1.81199 2.32720 2.63455 2.93585 3.04939 3.63678 3.75024 4.02281 4.04230 4.19332 4.21703 4.34761 4.42092 4.42630 4.44915 4.63408 4.68663 4.78402 4.89680 4.99025 5.05770 5.08034 5.10767 5.13395 5.21933 5.23385 5.25384 5.30128 5.40693 5.50151 5.52591 5.66228 5.68335 5.71131 5.81528 5.84970 6.18499 6.65276 6.93927 7.23134 7.53545 8.82602 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.041309 B = 0.002922 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.656944 B = 9579.472539 C =10055.460043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.019 4.019 3 C -0.141 4.141 4 C -0.087 4.087 5 C -0.128 4.128 6 C 0.489 3.511 7 O -0.608 6.608 8 N -0.710 5.710 9 C 0.264 3.736 10 C -0.554 4.554 11 H 0.085 0.915 12 C 0.001 3.999 13 N -0.933 5.933 14 Si 0.986 3.014 15 H -0.251 1.251 16 H -0.279 1.279 17 H -0.279 1.279 18 C -0.076 4.076 19 C -0.120 4.120 20 C -0.124 4.124 21 C -0.135 4.135 22 C -0.133 4.133 23 C -0.145 4.145 24 H 0.073 0.927 25 H 0.075 0.925 26 H 0.045 0.955 27 H 0.045 0.955 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.050 0.950 31 H 0.050 0.950 32 H 0.120 0.880 33 H 0.119 0.881 34 H 0.409 0.591 35 H -0.016 1.016 36 H -0.015 1.015 37 H 0.268 0.732 38 H 0.141 0.859 39 H 0.145 0.855 40 H 0.139 0.861 41 H 0.126 0.874 42 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.669 8.008 24.009 25.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.019 4.019 3 C -0.198 4.198 4 C -0.125 4.125 5 C -0.167 4.167 6 C 0.278 3.722 7 O -0.491 6.491 8 N -0.359 5.359 9 C 0.141 3.859 10 C -0.592 4.592 11 H 0.103 0.897 12 C -0.198 4.198 13 N -0.571 5.571 14 Si 0.809 3.191 15 H -0.175 1.175 16 H -0.205 1.205 17 H -0.205 1.205 18 C -0.076 4.076 19 C -0.138 4.138 20 C -0.142 4.142 21 C -0.153 4.153 22 C -0.151 4.151 23 C -0.163 4.163 24 H 0.092 0.908 25 H 0.094 0.906 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.094 0.906 29 H 0.092 0.908 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.138 0.862 33 H 0.137 0.863 34 H 0.245 0.755 35 H 0.002 0.998 36 H 0.003 0.997 37 H 0.077 0.923 38 H 0.159 0.841 39 H 0.163 0.837 40 H 0.157 0.843 41 H 0.144 0.856 42 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -5.104 7.210 23.945 25.523 hybrid contribution 0.174 -0.244 -1.245 1.280 sum -4.931 6.966 22.701 24.252 Atomic orbital electron populations 1.21971 0.92395 1.01996 1.03402 1.19492 0.96596 0.95469 0.90365 1.21972 1.00775 0.93614 1.03404 1.21365 1.00125 0.98613 0.92384 1.21835 1.03905 1.01157 0.89790 1.21742 0.79828 0.84463 0.86190 1.90627 1.41173 1.29471 1.87809 1.46239 1.52257 1.31700 1.05739 1.18529 0.92764 0.91680 0.82895 1.21661 1.33131 1.13673 0.90711 0.89676 1.26106 0.94765 0.95653 1.03301 1.70151 1.37283 1.24525 1.25180 0.85092 0.78113 0.78562 0.77327 1.17464 1.20478 1.20466 1.19992 0.97126 0.95240 0.95240 1.21217 1.00478 1.00687 0.91399 1.21468 0.97604 0.95645 0.99463 1.21423 0.98971 0.97393 0.97471 1.21379 1.00298 1.00378 0.93003 1.21388 0.99102 0.96760 0.99050 0.90823 0.90602 0.93550 0.93549 0.90596 0.90830 0.93081 0.93083 0.86244 0.86254 0.75494 0.99755 0.99748 0.92272 0.84146 0.83749 0.84328 0.85591 0.87080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 7.93 71.98 0.57 -1.68 16 2 C -0.02 -0.37 0.63 -52.93 -0.03 -0.40 16 3 C -0.14 -2.25 7.93 71.98 0.57 -1.68 16 4 C -0.09 -2.29 2.22 30.59 0.07 -2.22 16 5 C -0.13 -3.27 4.99 29.85 0.15 -3.13 16 6 C 0.49 19.70 7.83 87.66 0.69 20.39 16 7 O -0.61 -30.87 15.98 -3.03 -0.05 -30.91 16 8 N -0.71 -30.20 5.55 -466.78 -2.59 -32.78 16 9 C 0.26 14.79 5.43 85.63 0.46 15.25 16 10 C -0.55 -30.38 9.28 25.60 0.24 -30.14 16 11 H 0.09 4.19 7.60 -2.92 -0.02 4.17 16 12 C 0.00 0.06 5.46 84.66 0.46 0.52 16 13 N -0.93 -56.97 13.29 21.45 0.28 -56.69 16 14 Si 0.99 42.48 29.54 68.60 2.03 44.51 16 15 H -0.25 -9.92 7.11 99.48 0.71 -9.22 16 16 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 17 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 18 C -0.08 -1.61 4.76 -19.86 -0.09 -1.71 16 19 C -0.12 -2.06 8.71 22.27 0.19 -1.87 16 20 C -0.12 -1.97 10.05 22.27 0.22 -1.75 16 21 C -0.13 -2.36 10.05 22.27 0.22 -2.14 16 22 C -0.13 -2.84 10.05 22.27 0.22 -2.61 16 23 C -0.14 -3.56 8.98 22.27 0.20 -3.36 16 24 H 0.07 0.92 7.39 -2.38 -0.02 0.90 16 25 H 0.08 1.03 6.43 -2.39 -0.02 1.02 16 26 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.08 1.03 6.43 -2.39 -0.02 1.02 16 29 H 0.07 0.92 7.39 -2.38 -0.02 0.90 16 30 H 0.05 1.55 7.47 -2.38 -0.02 1.53 16 31 H 0.05 1.55 7.47 -2.39 -0.02 1.53 16 32 H 0.12 2.43 6.43 -2.39 -0.02 2.41 16 33 H 0.12 2.42 6.43 -2.38 -0.02 2.41 16 34 H 0.41 14.08 8.32 -92.71 -0.77 13.31 16 35 H -0.02 -0.98 8.14 -2.38 -0.02 -1.00 16 36 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 37 H 0.27 15.24 8.31 -92.70 -0.77 14.47 16 38 H 0.14 1.74 7.10 -2.91 -0.02 1.72 16 39 H 0.14 1.49 8.06 -2.91 -0.02 1.46 16 40 H 0.14 1.75 8.06 -2.91 -0.02 1.72 16 41 H 0.13 2.37 8.06 -2.91 -0.02 2.35 16 42 H 0.11 3.08 5.90 -2.91 -0.02 3.06 16 Total: -1.00 -74.23 339.37 4.06 -70.17 By element: Atomic # 1 Polarization: 21.98 SS G_CDS: 0.24 Total: 22.22 kcal Atomic # 6 Polarization: -20.66 SS G_CDS: 4.15 Total: -16.51 kcal Atomic # 7 Polarization: -87.17 SS G_CDS: -2.30 Total: -89.47 kcal Atomic # 8 Polarization: -30.87 SS G_CDS: -0.05 Total: -30.91 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.51 kcal Total: -74.23 4.06 -70.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427631910.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.334 kcal (2) G-P(sol) polarization free energy of solvation -74.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds