Wall clock time and date at job start Mon Mar 30 2020 01:58:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50697 * 109.47075 * 2 1 4 4 C 1.38241 * 120.00127 * 90.00458 * 3 2 1 5 5 C 1.38226 * 120.00475 * 179.97438 * 4 3 2 6 6 C 1.38240 * 120.00015 * 0.02562 * 5 4 3 7 7 C 1.50698 * 120.00045 * 179.97438 * 6 5 4 8 8 C 1.52993 * 109.47343 * 354.43078 * 7 6 5 9 9 C 1.53002 * 109.47163 * 234.42816 * 7 6 5 10 10 C 1.50707 * 109.47191 * 114.43162 * 7 6 5 11 11 O 1.21279 * 119.99781 * 354.36432 * 10 7 6 12 12 N 1.34770 * 119.99903 * 174.63819 * 10 7 6 13 13 C 1.46505 * 119.99766 * 180.02562 * 12 10 7 14 14 C 1.50694 * 109.46854 * 180.02562 * 13 12 10 15 15 H 1.08001 * 120.00567 * 359.97438 * 14 13 12 16 16 C 1.37888 * 120.00072 * 179.97438 * 14 13 12 17 17 N 1.31513 * 119.99417 * 359.97438 * 16 14 13 18 18 Si 1.86791 * 120.00050 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47083 * 60.00336 * 18 16 14 20 20 H 1.48507 * 109.46779 * 179.97438 * 18 16 14 21 21 H 1.48492 * 109.47654 * 299.99802 * 18 16 14 22 22 C 1.38239 * 119.99730 * 0.24949 * 6 5 4 23 23 C 1.38237 * 120.00041 * 359.49357 * 22 6 5 24 24 H 1.08998 * 109.47743 * 59.99882 * 1 2 3 25 25 H 1.08996 * 109.47062 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46941 * 299.99629 * 1 2 3 27 27 H 1.09004 * 109.46941 * 240.00371 * 2 1 3 28 28 H 1.08998 * 109.47743 * 120.00118 * 2 1 3 29 29 H 1.08001 * 119.99426 * 359.97438 * 4 3 2 30 30 H 1.07999 * 120.00380 * 179.97438 * 5 4 3 31 31 H 1.08997 * 109.47410 * 179.97438 * 8 7 6 32 32 H 1.08997 * 109.47031 * 300.00018 * 8 7 6 33 33 H 1.09006 * 109.46984 * 59.99985 * 8 7 6 34 34 H 1.08998 * 109.47110 * 300.00457 * 9 7 6 35 35 H 1.09007 * 109.46560 * 59.99725 * 9 7 6 36 36 H 1.08997 * 109.47067 * 179.97438 * 9 7 6 37 37 H 0.97001 * 120.00126 * 359.97438 * 12 10 7 38 38 H 1.09002 * 109.46814 * 299.99433 * 13 12 10 39 39 H 1.08994 * 109.47210 * 59.99287 * 13 12 10 40 40 H 0.97000 * 119.99948 * 180.02562 * 17 16 14 41 41 H 1.08004 * 119.99725 * 179.73538 * 22 6 5 42 42 H 1.07999 * 120.00176 * 180.25013 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2628 2.0725 1.1972 5 6 2.7240 3.3755 1.1973 6 6 2.9544 4.0273 0.0001 7 6 3.4567 5.4481 0.0002 8 6 3.4948 5.9755 1.4359 9 6 2.5204 6.3201 -0.8388 10 6 4.8438 5.4906 -0.5876 11 8 5.4127 4.4586 -0.8743 12 7 5.4541 6.6751 -0.7893 13 6 6.8023 6.7164 -1.3612 14 6 7.2529 8.1493 -1.4822 15 1 6.6002 8.9493 -1.1652 16 6 8.4985 8.4391 -1.9975 17 7 9.2935 7.4650 -2.3830 18 14 9.0568 10.2153 -2.1481 19 1 9.0692 10.8459 -0.8037 20 1 10.4239 10.2571 -2.7265 21 1 8.1216 10.9549 -3.0331 22 6 2.7185 3.3776 -1.1971 23 6 2.2622 2.0727 -1.1971 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 2.0824 1.5634 2.1325 30 1 2.9037 3.8847 2.1326 31 1 3.8585 7.0030 1.4360 32 1 2.4916 5.9448 1.8609 33 1 4.1619 5.3542 2.0336 34 1 2.4932 5.9443 -1.8616 35 1 1.5171 6.2893 -0.4137 36 1 2.8835 7.3478 -0.8384 37 1 5.0005 7.5003 -0.5566 38 1 7.4891 6.1735 -0.7119 39 1 6.7927 6.2535 -2.3480 40 1 10.1699 7.6688 -2.7452 41 1 2.8943 3.8882 -2.1324 42 1 2.0818 1.5637 -2.1325 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427634280.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:17 Heat of formation + Delta-G solvation = -39.578493 kcal Electronic energy + Delta-G solvation = -21028.446709 eV Core-core repulsion = 17972.256689 eV Total energy + Delta-G solvation = -3056.190021 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.23493 -38.48169 -35.54157 -34.20263 -33.17960 -32.12740 -30.92182 -28.68237 -27.34219 -27.13531 -24.33071 -23.36360 -22.27204 -21.82620 -20.50472 -18.96916 -17.20253 -16.30496 -15.71578 -15.37373 -15.26404 -14.71956 -14.37895 -14.19062 -14.01378 -13.68638 -13.30779 -13.28255 -13.13270 -12.55610 -12.42879 -12.14524 -12.01812 -11.88710 -11.69920 -11.64303 -11.44139 -11.27380 -11.08521 -10.99892 -10.86340 -10.59276 -10.49102 -10.30165 -9.40216 -8.92837 -8.72631 -8.68893 -8.31900 -7.84716 -6.15968 -4.22995 1.49991 1.61649 3.25129 3.29978 3.31409 3.40982 3.81861 4.22048 4.41401 4.63098 4.80222 4.82795 4.99673 5.09272 5.15440 5.19917 5.26186 5.30576 5.44002 5.47043 5.58518 5.61384 5.67717 5.74058 5.81723 5.85927 5.92764 5.94994 6.02310 6.14279 6.22462 6.26031 6.27523 6.61643 6.74571 6.84027 7.18139 7.32984 7.46675 7.53367 7.67679 7.98193 8.65326 8.79474 9.13569 9.43733 10.94206 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.037304 B = 0.003481 C = 0.003354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.405659 B = 8041.144116 C = 8346.129556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.083 4.083 3 C -0.091 4.091 4 C -0.121 4.121 5 C -0.114 4.114 6 C -0.050 4.050 7 C -0.048 4.048 8 C -0.140 4.140 9 C -0.137 4.137 10 C 0.508 3.492 11 O -0.546 6.546 12 N -0.710 5.710 13 C 0.251 3.749 14 C -0.543 4.543 15 H 0.062 0.938 16 C 0.064 3.936 17 N -0.886 5.886 18 Si 0.903 3.097 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.275 1.275 22 C -0.088 4.088 23 C -0.118 4.118 24 H 0.055 0.945 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.117 0.883 30 H 0.124 0.876 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.389 0.611 38 H 0.026 0.974 39 H 0.026 0.974 40 H 0.266 0.734 41 H 0.118 0.882 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.114 -8.050 6.408 20.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.121 4.121 3 C -0.091 4.091 4 C -0.140 4.140 5 C -0.132 4.132 6 C -0.051 4.051 7 C -0.051 4.051 8 C -0.197 4.197 9 C -0.194 4.194 10 C 0.292 3.708 11 O -0.424 6.424 12 N -0.358 5.358 13 C 0.130 3.870 14 C -0.582 4.582 15 H 0.080 0.920 16 C -0.140 4.140 17 N -0.523 5.523 18 Si 0.731 3.269 19 H -0.201 1.201 20 H -0.211 1.211 21 H -0.201 1.201 22 C -0.106 4.106 23 C -0.136 4.136 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.135 0.865 30 H 0.142 0.858 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.222 0.778 38 H 0.044 0.956 39 H 0.044 0.956 40 H 0.076 0.924 41 H 0.136 0.864 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -17.470 -8.818 6.098 20.498 hybrid contribution 0.363 1.367 -0.064 1.416 sum -17.107 -7.451 6.034 19.611 Atomic orbital electron populations 1.21741 0.94996 1.01360 1.02147 1.20508 0.95910 0.93029 1.02627 1.19808 0.99979 0.95964 0.93324 1.20890 1.01015 0.94836 0.97209 1.21085 0.99666 0.94766 0.97691 1.19322 0.98079 0.94258 0.93413 1.19790 0.94251 0.93554 0.97551 1.21905 1.02353 1.01578 0.93912 1.21874 0.98641 0.99185 0.99715 1.20175 0.86845 0.84536 0.79247 1.90675 1.66397 1.33266 1.52103 1.46440 1.19726 1.06798 1.62880 1.19083 0.76776 0.97193 0.93931 1.21188 1.01519 0.91570 1.43882 0.91992 1.24954 0.96271 0.97861 0.94916 1.69967 1.09389 1.31718 1.41212 0.86481 0.77865 0.84124 0.78478 1.20069 1.21072 1.20063 1.20909 0.97383 0.94600 0.97708 1.20920 1.00633 0.94761 0.97314 0.92600 0.92682 0.92656 0.91222 0.91284 0.86543 0.85815 0.91528 0.91527 0.91778 0.91930 0.91732 0.91516 0.77795 0.95634 0.95634 0.92399 0.86414 0.86481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.89 37.16 0.37 -0.81 16 2 C -0.08 -0.80 6.06 -27.89 -0.17 -0.97 16 3 C -0.09 -1.13 5.13 -104.62 -0.54 -1.66 16 4 C -0.12 -1.52 9.70 -39.58 -0.38 -1.90 16 5 C -0.11 -1.56 8.99 -39.58 -0.36 -1.92 16 6 C -0.05 -0.77 4.23 -104.62 -0.44 -1.21 16 7 C -0.05 -0.72 0.72 -156.81 -0.11 -0.84 16 8 C -0.14 -1.76 7.10 37.15 0.26 -1.49 16 9 C -0.14 -1.72 8.07 37.16 0.30 -1.42 16 10 C 0.51 10.36 6.35 -10.98 -0.07 10.29 16 11 O -0.55 -13.53 15.55 5.56 0.09 -13.44 16 12 N -0.71 -15.08 5.38 -61.47 -0.33 -15.41 16 13 C 0.25 6.71 5.43 -5.19 -0.03 6.68 16 14 C -0.54 -14.78 9.28 -34.44 -0.32 -15.10 16 15 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 16 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 17 N -0.89 -26.25 13.29 55.43 0.74 -25.52 16 18 Si 0.90 20.89 29.54 -169.99 -5.02 15.86 16 19 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 20 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 22 C -0.09 -1.35 8.38 -39.58 -0.33 -1.68 16 23 C -0.12 -1.61 9.70 -39.58 -0.38 -1.99 16 24 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.07 0.63 8.09 -51.93 -0.42 0.21 16 28 H 0.07 0.60 8.09 -51.93 -0.42 0.18 16 29 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 30 H 0.12 1.46 5.91 -52.49 -0.31 1.15 16 31 H 0.07 0.79 7.95 -51.93 -0.41 0.38 16 32 H 0.07 0.67 7.77 -51.93 -0.40 0.27 16 33 H 0.06 0.85 7.25 -51.93 -0.38 0.47 16 34 H 0.06 0.82 7.08 -51.93 -0.37 0.45 16 35 H 0.06 0.68 8.14 -51.92 -0.42 0.26 16 36 H 0.07 0.79 7.28 -51.93 -0.38 0.41 16 37 H 0.39 7.11 7.23 -40.82 -0.30 6.82 16 38 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 41 H 0.12 1.82 7.24 -52.48 -0.38 1.44 16 42 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 LS Contribution 344.35 15.07 5.19 5.19 Total: -1.00 -32.46 344.35 -8.32 -40.78 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: -6.68 Total: 4.87 kcal Atomic # 6 Polarization: -10.04 SS G_CDS: -2.30 Total: -12.34 kcal Atomic # 7 Polarization: -41.34 SS G_CDS: 0.41 Total: -40.93 kcal Atomic # 8 Polarization: -13.53 SS G_CDS: 0.09 Total: -13.44 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.46 -8.32 -40.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427634280.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.203 kcal (2) G-P(sol) polarization free energy of solvation -32.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds