Wall clock time and date at job start Mon Mar 30 2020 01:58:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50697 * 109.47075 * 2 1 4 4 C 1.38241 * 120.00127 * 90.00458 * 3 2 1 5 5 C 1.38226 * 120.00475 * 179.97438 * 4 3 2 6 6 C 1.38240 * 120.00015 * 0.02562 * 5 4 3 7 7 C 1.50698 * 120.00045 * 179.97438 * 6 5 4 8 8 C 1.52993 * 109.47343 * 354.43078 * 7 6 5 9 9 C 1.53002 * 109.47163 * 234.42816 * 7 6 5 10 10 C 1.50707 * 109.47191 * 114.43162 * 7 6 5 11 11 O 1.21279 * 119.99781 * 354.36432 * 10 7 6 12 12 N 1.34770 * 119.99903 * 174.63819 * 10 7 6 13 13 C 1.46505 * 119.99766 * 180.02562 * 12 10 7 14 14 C 1.50694 * 109.46854 * 180.02562 * 13 12 10 15 15 H 1.08001 * 120.00567 * 359.97438 * 14 13 12 16 16 C 1.37888 * 120.00072 * 179.97438 * 14 13 12 17 17 N 1.31513 * 119.99417 * 359.97438 * 16 14 13 18 18 Si 1.86791 * 120.00050 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47083 * 60.00336 * 18 16 14 20 20 H 1.48507 * 109.46779 * 179.97438 * 18 16 14 21 21 H 1.48492 * 109.47654 * 299.99802 * 18 16 14 22 22 C 1.38239 * 119.99730 * 0.24949 * 6 5 4 23 23 C 1.38237 * 120.00041 * 359.49357 * 22 6 5 24 24 H 1.08998 * 109.47743 * 59.99882 * 1 2 3 25 25 H 1.08996 * 109.47062 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46941 * 299.99629 * 1 2 3 27 27 H 1.09004 * 109.46941 * 240.00371 * 2 1 3 28 28 H 1.08998 * 109.47743 * 120.00118 * 2 1 3 29 29 H 1.08001 * 119.99426 * 359.97438 * 4 3 2 30 30 H 1.07999 * 120.00380 * 179.97438 * 5 4 3 31 31 H 1.08997 * 109.47410 * 179.97438 * 8 7 6 32 32 H 1.08997 * 109.47031 * 300.00018 * 8 7 6 33 33 H 1.09006 * 109.46984 * 59.99985 * 8 7 6 34 34 H 1.08998 * 109.47110 * 300.00457 * 9 7 6 35 35 H 1.09007 * 109.46560 * 59.99725 * 9 7 6 36 36 H 1.08997 * 109.47067 * 179.97438 * 9 7 6 37 37 H 0.97001 * 120.00126 * 359.97438 * 12 10 7 38 38 H 1.09002 * 109.46814 * 299.99433 * 13 12 10 39 39 H 1.08994 * 109.47210 * 59.99287 * 13 12 10 40 40 H 0.97000 * 119.99948 * 180.02562 * 17 16 14 41 41 H 1.08004 * 119.99725 * 179.73538 * 22 6 5 42 42 H 1.07999 * 120.00176 * 180.25013 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2628 2.0725 1.1972 5 6 2.7240 3.3755 1.1973 6 6 2.9544 4.0273 0.0001 7 6 3.4567 5.4481 0.0002 8 6 3.4948 5.9755 1.4359 9 6 2.5204 6.3201 -0.8388 10 6 4.8438 5.4906 -0.5876 11 8 5.4127 4.4586 -0.8743 12 7 5.4541 6.6751 -0.7893 13 6 6.8023 6.7164 -1.3612 14 6 7.2529 8.1493 -1.4822 15 1 6.6002 8.9493 -1.1652 16 6 8.4985 8.4391 -1.9975 17 7 9.2935 7.4650 -2.3830 18 14 9.0568 10.2153 -2.1481 19 1 9.0692 10.8459 -0.8037 20 1 10.4239 10.2571 -2.7265 21 1 8.1216 10.9549 -3.0331 22 6 2.7185 3.3776 -1.1971 23 6 2.2622 2.0727 -1.1971 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 2.0824 1.5634 2.1325 30 1 2.9037 3.8847 2.1326 31 1 3.8585 7.0030 1.4360 32 1 2.4916 5.9448 1.8609 33 1 4.1619 5.3542 2.0336 34 1 2.4932 5.9443 -1.8616 35 1 1.5171 6.2893 -0.4137 36 1 2.8835 7.3478 -0.8384 37 1 5.0005 7.5003 -0.5566 38 1 7.4891 6.1735 -0.7119 39 1 6.7927 6.2535 -2.3480 40 1 10.1699 7.6688 -2.7452 41 1 2.8943 3.8882 -2.1324 42 1 2.0818 1.5637 -2.1325 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427634280.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:17 Heat of formation + Delta-G solvation = -59.132048 kcal Electronic energy + Delta-G solvation = -21029.294615 eV Core-core repulsion = 17972.256689 eV Total energy + Delta-G solvation = -3057.037927 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.55030 -39.82671 -36.75640 -36.16284 -34.52830 -33.75871 -31.95942 -29.80646 -29.02788 -28.32982 -25.52238 -24.92755 -23.48264 -23.08944 -21.74622 -20.53284 -18.80273 -17.78565 -17.29993 -16.87531 -16.50111 -16.23945 -15.92870 -15.53005 -15.05384 -14.77121 -14.59654 -14.35094 -14.18134 -14.06743 -14.00295 -13.38558 -13.30497 -13.16199 -12.97743 -12.91439 -12.69176 -12.63714 -12.46624 -12.23741 -12.17522 -11.89118 -11.60307 -11.50519 -11.49286 -10.80155 -10.59157 -9.83870 -9.74983 -9.38215 -8.29978 -6.47100 0.44033 0.55978 1.42130 1.46456 1.54631 1.76957 2.30991 2.53307 2.97557 3.04649 3.52321 3.79309 3.94205 3.96783 4.09360 4.11950 4.17977 4.39543 4.53400 4.57840 4.67438 4.74396 4.76408 4.82115 4.84774 4.89722 5.07077 5.09519 5.11075 5.15196 5.21743 5.22127 5.24431 5.28213 5.41248 5.47867 5.57281 5.68648 5.75246 5.75974 5.83624 6.16760 6.63655 6.90574 7.22215 7.48606 8.82118 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.037304 B = 0.003481 C = 0.003354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.405659 B = 8041.144116 C = 8346.129556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.083 4.083 3 C -0.091 4.091 4 C -0.125 4.125 5 C -0.120 4.120 6 C -0.074 4.074 7 C -0.036 4.036 8 C -0.138 4.138 9 C -0.134 4.134 10 C 0.504 3.496 11 O -0.596 6.596 12 N -0.703 5.703 13 C 0.269 3.731 14 C -0.556 4.556 15 H 0.085 0.915 16 C 0.003 3.997 17 N -0.932 5.932 18 Si 0.985 3.015 19 H -0.261 1.261 20 H -0.286 1.286 21 H -0.261 1.261 22 C -0.111 4.111 23 C -0.131 4.131 24 H 0.050 0.950 25 H 0.071 0.929 26 H 0.056 0.944 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.144 0.856 30 H 0.143 0.857 31 H 0.073 0.927 32 H 0.100 0.900 33 H 0.054 0.946 34 H 0.049 0.951 35 H 0.093 0.907 36 H 0.075 0.925 37 H 0.407 0.593 38 H -0.016 1.016 39 H -0.016 1.016 40 H 0.269 0.731 41 H 0.102 0.898 42 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.154 -6.946 8.037 22.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.120 4.120 3 C -0.091 4.091 4 C -0.143 4.143 5 C -0.138 4.138 6 C -0.074 4.074 7 C -0.040 4.040 8 C -0.195 4.195 9 C -0.191 4.191 10 C 0.291 3.709 11 O -0.478 6.478 12 N -0.353 5.353 13 C 0.146 3.854 14 C -0.594 4.594 15 H 0.103 0.897 16 C -0.196 4.196 17 N -0.570 5.570 18 Si 0.808 3.192 19 H -0.185 1.185 20 H -0.211 1.211 21 H -0.186 1.186 22 C -0.129 4.129 23 C -0.149 4.149 24 H 0.069 0.931 25 H 0.090 0.910 26 H 0.076 0.924 27 H 0.090 0.910 28 H 0.099 0.901 29 H 0.162 0.838 30 H 0.161 0.839 31 H 0.092 0.908 32 H 0.119 0.881 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.112 0.888 36 H 0.094 0.906 37 H 0.243 0.757 38 H 0.002 0.998 39 H 0.002 0.998 40 H 0.077 0.923 41 H 0.120 0.880 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -19.564 -7.694 7.749 22.405 hybrid contribution 0.978 0.882 -0.580 1.439 sum -18.587 -6.812 7.168 21.054 Atomic orbital electron populations 1.21711 0.93699 1.02438 1.01999 1.20576 0.96937 0.91126 1.03378 1.20194 0.98796 0.97293 0.92833 1.21272 1.00044 0.94550 0.98394 1.21371 0.99283 0.95385 0.97757 1.19459 0.99338 0.94571 0.94050 1.19761 0.90365 0.94726 0.99113 1.21956 1.04303 1.01517 0.91763 1.21902 0.99570 0.98879 0.98799 1.21284 0.88711 0.83128 0.77783 1.90640 1.68223 1.34936 1.53951 1.46171 1.17969 1.08320 1.62842 1.18505 0.78945 0.96812 0.91147 1.21581 1.02182 0.91821 1.43791 0.89743 1.26091 0.96292 1.03150 0.94095 1.70140 1.09955 1.34718 1.42226 0.85201 0.77241 0.77561 0.79192 1.18529 1.21132 1.18563 1.20978 0.98816 0.95686 0.97450 1.21150 1.00744 0.94341 0.98670 0.93125 0.91012 0.92444 0.90984 0.90074 0.83795 0.83932 0.90784 0.88098 0.92728 0.93199 0.88825 0.90569 0.75739 0.99775 0.99790 0.92251 0.88020 0.85343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 9.89 71.98 0.71 -1.25 16 2 C -0.08 -1.41 6.06 29.85 0.18 -1.23 16 3 C -0.09 -2.15 5.13 -19.86 -0.10 -2.25 16 4 C -0.12 -2.87 9.70 22.27 0.22 -2.66 16 5 C -0.12 -3.10 8.99 22.27 0.20 -2.90 16 6 C -0.07 -2.23 4.23 -19.86 -0.08 -2.32 16 7 C -0.04 -1.08 0.72 -53.67 -0.04 -1.12 16 8 C -0.14 -3.16 7.10 71.98 0.51 -2.65 16 9 C -0.13 -3.19 8.07 71.98 0.58 -2.61 16 10 C 0.50 21.25 6.35 87.66 0.56 21.81 16 11 O -0.60 -31.27 15.55 -3.03 -0.05 -31.32 16 12 N -0.70 -30.68 5.38 -466.79 -2.51 -33.19 16 13 C 0.27 15.13 5.43 85.63 0.46 15.59 16 14 C -0.56 -30.59 9.28 25.60 0.24 -30.36 16 15 H 0.08 4.16 7.60 -2.91 -0.02 4.14 16 16 C 0.00 0.18 5.46 84.66 0.46 0.65 16 17 N -0.93 -57.01 13.29 21.45 0.28 -56.73 16 18 Si 0.99 42.51 29.54 68.60 2.03 44.54 16 19 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 20 H -0.29 -12.26 7.11 99.48 0.71 -11.56 16 21 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 22 C -0.11 -3.52 8.38 22.27 0.19 -3.33 16 23 C -0.13 -3.57 9.70 22.27 0.22 -3.36 16 24 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 25 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 27 H 0.07 1.20 8.09 -2.38 -0.02 1.18 16 28 H 0.08 1.20 8.09 -2.39 -0.02 1.18 16 29 H 0.14 2.46 8.06 -2.91 -0.02 2.43 16 30 H 0.14 3.02 5.91 -2.91 -0.02 3.00 16 31 H 0.07 1.58 7.95 -2.39 -0.02 1.56 16 32 H 0.10 1.65 7.77 -2.39 -0.02 1.63 16 33 H 0.05 1.36 7.25 -2.38 -0.02 1.34 16 34 H 0.05 1.31 7.08 -2.39 -0.02 1.29 16 35 H 0.09 1.71 8.14 -2.38 -0.02 1.69 16 36 H 0.08 1.64 7.28 -2.39 -0.02 1.63 16 37 H 0.41 14.68 7.23 -92.71 -0.67 14.01 16 38 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 39 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 40 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 41 H 0.10 3.40 7.24 -2.91 -0.02 3.38 16 42 H 0.13 3.03 8.06 -2.91 -0.02 3.01 16 Total: -1.00 -74.19 344.35 4.38 -69.81 By element: Atomic # 1 Polarization: 24.54 SS G_CDS: 0.33 Total: 24.87 kcal Atomic # 6 Polarization: -22.27 SS G_CDS: 4.30 Total: -17.97 kcal Atomic # 7 Polarization: -87.69 SS G_CDS: -2.23 Total: -89.92 kcal Atomic # 8 Polarization: -31.27 SS G_CDS: -0.05 Total: -31.32 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.54 kcal Total: -74.19 4.38 -69.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427634280.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.675 kcal (2) G-P(sol) polarization free energy of solvation -74.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds