Wall clock time and date at job start Mon Mar 30 2020 02:40:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.47017 * 2 1 4 4 C 1.53003 * 109.46952 * 174.14243 * 3 2 1 5 5 C 1.53001 * 109.47101 * 186.36209 * 4 3 2 6 6 C 1.50697 * 109.47075 * 54.14408 * 3 2 1 7 7 O 1.21281 * 119.99658 * 240.00397 * 6 3 2 8 8 N 1.34781 * 120.00288 * 59.99320 * 6 3 2 9 9 C 1.46496 * 120.00120 * 179.97438 * 8 6 3 10 10 C 1.50696 * 109.47050 * 180.02562 * 9 8 6 11 11 H 1.07994 * 120.00137 * 0.02562 * 10 9 8 12 12 C 1.37882 * 119.99962 * 180.02562 * 10 9 8 13 13 N 1.31515 * 120.00053 * 180.02562 * 12 10 9 14 14 Si 1.86797 * 119.99967 * 0.02562 * 12 10 9 15 15 H 1.48506 * 109.47462 * 89.99601 * 14 12 10 16 16 H 1.48501 * 109.47346 * 210.00145 * 14 12 10 17 17 H 1.48503 * 109.47320 * 329.99553 * 14 12 10 18 18 C 1.50694 * 109.47160 * 294.14068 * 3 2 1 19 19 C 1.38235 * 120.00221 * 70.30093 * 18 3 2 20 20 C 1.38232 * 120.00156 * 179.97438 * 19 18 3 21 21 C 1.38234 * 120.00006 * 359.97438 * 20 19 18 22 22 C 1.38227 * 120.00062 * 0.27090 * 21 20 19 23 23 C 1.38234 * 120.00173 * 250.28076 * 18 3 2 24 24 H 1.09007 * 109.46849 * 69.03559 * 1 2 3 25 25 H 1.09002 * 109.47024 * 189.02992 * 1 2 3 26 26 H 1.08997 * 109.47215 * 309.03412 * 1 2 3 27 27 H 1.08999 * 109.47544 * 240.00218 * 2 1 3 28 28 H 1.08996 * 109.47386 * 120.00190 * 2 1 3 29 29 H 1.09007 * 109.46781 * 306.35833 * 4 3 2 30 30 H 1.08998 * 109.47298 * 66.35815 * 4 3 2 31 31 H 1.09000 * 109.46907 * 66.63871 * 5 4 3 32 32 H 1.08996 * 109.46992 * 186.64252 * 5 4 3 33 33 H 1.08996 * 109.46620 * 306.64335 * 5 4 3 34 34 H 0.97001 * 119.99554 * 0.02562 * 8 6 3 35 35 H 1.08998 * 109.47308 * 300.01051 * 9 8 6 36 36 H 1.09009 * 109.46640 * 60.00682 * 9 8 6 37 37 H 0.97001 * 119.99893 * 180.02562 * 13 12 10 38 38 H 1.07999 * 119.99780 * 359.97438 * 19 18 3 39 39 H 1.08008 * 119.99707 * 180.02562 * 20 19 18 40 40 H 1.08000 * 119.99931 * 180.02562 * 21 20 19 41 41 H 1.08005 * 120.00296 * 179.72417 * 22 21 20 42 42 H 1.07998 * 120.00023 * 0.02562 * 23 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5629 1.4451 0.1472 5 6 4.0575 2.8841 0.3065 6 6 1.4228 2.1936 1.1515 7 8 0.7410 3.1741 0.9402 8 7 1.6282 1.7755 2.4163 9 6 1.0286 2.5059 3.5357 10 6 1.4094 1.8388 4.8322 11 1 2.0357 0.9590 4.8233 12 6 0.9581 2.3516 6.0299 13 7 1.2908 1.7698 7.1615 14 14 -0.1258 3.8729 6.0454 15 1 -1.5517 3.4656 5.9674 16 1 0.1043 4.6320 7.3008 17 1 0.2084 4.7307 4.8801 18 6 1.6596 2.1098 -1.2965 19 6 0.3367 2.4184 -1.5530 20 6 -0.0121 3.0309 -2.7421 21 6 0.9619 3.3355 -3.6744 22 6 2.2840 3.0224 -3.4202 23 6 2.6335 2.4138 -2.2292 24 1 -0.3633 0.3677 -0.9597 25 1 -0.3633 -1.0149 0.1613 26 1 -0.3633 0.6472 0.7982 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 3.8439 0.8649 1.0263 30 1 4.0145 1.0018 -0.7403 31 1 3.7009 3.2880 1.2541 32 1 5.1473 2.8973 0.2930 33 1 3.6765 3.4921 -0.5140 34 1 2.1737 0.9914 2.5853 35 1 1.3923 3.5334 3.5356 36 1 -0.0564 2.5045 3.4309 37 1 0.9730 2.1304 8.0040 38 1 -0.4242 2.1808 -0.8244 39 1 -1.0457 3.2724 -2.9422 40 1 0.6894 3.8145 -4.6033 41 1 3.0445 3.2563 -4.1506 42 1 3.6670 2.1727 -2.0289 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427634975.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:32 Heat of formation + Delta-G solvation = -24.089260 kcal Electronic energy + Delta-G solvation = -22123.022325 eV Core-core repulsion = 19067.503968 eV Total energy + Delta-G solvation = -3055.518357 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.75995 -38.29024 -35.74264 -34.31509 -32.71230 -32.31991 -30.36736 -30.06716 -28.15800 -26.69858 -23.39716 -22.46174 -22.11536 -21.96333 -20.87059 -19.09082 -17.49679 -16.60015 -15.94293 -15.47080 -15.35334 -14.81916 -14.58378 -14.44645 -14.02577 -13.60477 -13.37444 -13.09833 -12.87430 -12.64427 -12.43086 -12.37805 -12.24433 -11.96287 -11.74533 -11.58856 -11.22299 -11.03229 -10.98491 -10.80113 -10.78494 -10.39665 -10.35275 -9.97271 -9.49385 -9.05318 -8.77825 -8.65519 -8.52547 -8.11810 -6.21997 -4.23906 1.48651 1.58631 3.24508 3.28298 3.32690 3.41299 3.80810 4.14130 4.32878 4.56104 4.74142 4.94455 5.09529 5.12151 5.14005 5.23815 5.28049 5.29611 5.43157 5.49906 5.55456 5.64369 5.71753 5.93939 5.94402 5.97742 6.00155 6.11782 6.12286 6.20632 6.25409 6.38229 6.44344 6.60032 6.66565 6.79444 6.84346 7.07321 7.15342 7.24476 7.40230 8.14272 8.53035 8.75459 8.95814 9.38609 10.89996 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.024640 B = 0.005002 C = 0.004837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.111764 B = 5595.884366 C = 5787.305690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.106 4.106 3 C -0.042 4.042 4 C -0.113 4.113 5 C -0.164 4.164 6 C 0.518 3.482 7 O -0.550 6.550 8 N -0.703 5.703 9 C 0.222 3.778 10 C -0.542 4.542 11 H 0.079 0.921 12 C 0.078 3.922 13 N -0.892 5.892 14 Si 0.875 3.125 15 H -0.273 1.273 16 H -0.283 1.283 17 H -0.261 1.261 18 C -0.054 4.054 19 C -0.080 4.080 20 C -0.129 4.129 21 C -0.125 4.125 22 C -0.132 4.132 23 C -0.118 4.118 24 H 0.062 0.938 25 H 0.057 0.943 26 H 0.061 0.939 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.063 0.937 34 H 0.395 0.605 35 H 0.024 0.976 36 H 0.019 0.981 37 H 0.267 0.733 38 H 0.129 0.871 39 H 0.117 0.883 40 H 0.115 0.885 41 H 0.117 0.883 42 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.637 -2.080 -19.433 19.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.144 4.144 3 C -0.046 4.046 4 C -0.150 4.150 5 C -0.221 4.221 6 C 0.303 3.697 7 O -0.429 6.429 8 N -0.351 5.351 9 C 0.100 3.900 10 C -0.580 4.580 11 H 0.097 0.903 12 C -0.125 4.125 13 N -0.530 5.530 14 Si 0.702 3.298 15 H -0.199 1.199 16 H -0.209 1.209 17 H -0.185 1.185 18 C -0.054 4.054 19 C -0.098 4.098 20 C -0.147 4.147 21 C -0.143 4.143 22 C -0.150 4.150 23 C -0.136 4.136 24 H 0.081 0.919 25 H 0.076 0.924 26 H 0.080 0.920 27 H 0.090 0.910 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.229 0.771 35 H 0.041 0.959 36 H 0.037 0.963 37 H 0.077 0.923 38 H 0.146 0.854 39 H 0.135 0.865 40 H 0.133 0.867 41 H 0.135 0.865 42 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 2.120 -1.359 -19.324 19.488 hybrid contribution -0.314 0.462 0.371 0.670 sum 1.806 -0.897 -18.953 19.060 Atomic orbital electron populations 1.22085 0.95437 1.02115 1.02595 1.21545 0.96734 0.93297 1.02825 1.19926 0.96642 0.95879 0.92129 1.21633 0.92336 0.98433 1.02647 1.21994 1.00688 0.96224 1.03207 1.20045 0.80910 0.84743 0.84038 1.90660 1.40237 1.27232 1.84751 1.46144 1.51829 1.31483 1.05642 1.19466 0.93494 0.92749 0.84338 1.21082 1.33702 1.14457 0.88709 0.90279 1.24784 0.95609 0.96936 0.95210 1.69880 1.44940 1.40439 0.97722 0.86844 0.81302 0.83555 0.78149 1.19875 1.20912 1.18540 1.19290 0.93557 0.98678 0.93894 1.21225 0.96289 0.96213 0.96045 1.21117 0.99255 0.99917 0.94455 1.21068 0.93354 1.00616 0.99255 1.21017 0.96191 1.00488 0.97283 1.21174 0.99281 0.99384 0.93713 0.91866 0.92382 0.91982 0.91003 0.90790 0.90796 0.90779 0.92038 0.92498 0.91779 0.77146 0.95853 0.96309 0.92286 0.85363 0.86492 0.86701 0.86538 0.85578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.18 8.36 37.16 0.31 -1.86 16 2 C -0.11 -1.31 4.84 -26.73 -0.13 -1.44 16 3 C -0.04 -0.60 0.39 -156.81 -0.06 -0.67 16 4 C -0.11 -1.38 4.36 -26.73 -0.12 -1.50 16 5 C -0.16 -2.21 8.80 37.16 0.33 -1.88 16 6 C 0.52 9.68 3.12 -10.98 -0.03 9.65 16 7 O -0.55 -12.24 14.29 5.56 0.08 -12.16 16 8 N -0.70 -14.02 5.36 -61.47 -0.33 -14.35 16 9 C 0.22 5.41 4.50 -5.20 -0.02 5.38 16 10 C -0.54 -14.71 9.83 -34.44 -0.34 -15.05 16 11 H 0.08 2.23 7.84 -52.49 -0.41 1.82 16 12 C 0.08 2.20 5.47 -17.82 -0.10 2.11 16 13 N -0.89 -26.39 13.96 55.43 0.77 -25.62 16 14 Si 0.88 21.47 27.47 -169.99 -4.67 16.81 16 15 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 16 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 17 H -0.26 -6.40 6.54 56.52 0.37 -6.03 16 18 C -0.05 -0.77 4.10 -104.63 -0.43 -1.20 16 19 C -0.08 -1.20 6.32 -39.58 -0.25 -1.45 16 20 C -0.13 -1.70 10.05 -39.58 -0.40 -2.09 16 21 C -0.12 -1.47 10.05 -39.59 -0.40 -1.86 16 22 C -0.13 -1.52 10.05 -39.59 -0.40 -1.92 16 23 C -0.12 -1.47 7.47 -39.58 -0.30 -1.77 16 24 H 0.06 0.80 5.64 -51.92 -0.29 0.50 16 25 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.06 0.98 6.62 -51.93 -0.34 0.64 16 27 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.07 0.87 7.73 -51.93 -0.40 0.47 16 29 H 0.07 0.86 7.74 -51.93 -0.40 0.46 16 30 H 0.07 0.74 6.60 -51.93 -0.34 0.39 16 31 H 0.06 1.00 7.32 -51.93 -0.38 0.62 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.89 5.71 -51.93 -0.30 0.59 16 34 H 0.39 7.07 7.40 -40.82 -0.30 6.77 16 35 H 0.02 0.61 7.20 -51.93 -0.37 0.23 16 36 H 0.02 0.48 7.57 -51.92 -0.39 0.09 16 37 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 38 H 0.13 2.07 5.30 -52.49 -0.28 1.79 16 39 H 0.12 1.31 8.06 -52.48 -0.42 0.89 16 40 H 0.11 1.06 8.06 -52.49 -0.42 0.64 16 41 H 0.12 1.05 8.06 -52.48 -0.42 0.63 16 42 H 0.13 1.35 5.22 -52.49 -0.27 1.08 16 LS Contribution 324.33 15.07 4.89 4.89 Total: -1.00 -31.37 324.33 -7.78 -39.16 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -6.20 Total: 6.84 kcal Atomic # 6 Polarization: -13.23 SS G_CDS: -2.33 Total: -15.56 kcal Atomic # 7 Polarization: -40.41 SS G_CDS: 0.44 Total: -39.96 kcal Atomic # 8 Polarization: -12.24 SS G_CDS: 0.08 Total: -12.16 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.67 Total: 16.81 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -31.37 -7.78 -39.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427634975.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.066 kcal (2) G-P(sol) polarization free energy of solvation -31.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds