Wall clock time and date at job start Mon Mar 30 2020 02:40:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.47017 * 2 1 4 4 C 1.53003 * 109.46952 * 174.14243 * 3 2 1 5 5 C 1.53001 * 109.47101 * 186.36209 * 4 3 2 6 6 C 1.50697 * 109.47075 * 54.14408 * 3 2 1 7 7 O 1.21281 * 119.99658 * 240.00397 * 6 3 2 8 8 N 1.34781 * 120.00288 * 59.99320 * 6 3 2 9 9 C 1.46496 * 120.00120 * 179.97438 * 8 6 3 10 10 C 1.50696 * 109.47050 * 180.02562 * 9 8 6 11 11 H 1.07994 * 120.00137 * 0.02562 * 10 9 8 12 12 C 1.37882 * 119.99962 * 180.02562 * 10 9 8 13 13 N 1.31515 * 120.00053 * 180.02562 * 12 10 9 14 14 Si 1.86797 * 119.99967 * 0.02562 * 12 10 9 15 15 H 1.48506 * 109.47462 * 89.99601 * 14 12 10 16 16 H 1.48501 * 109.47346 * 210.00145 * 14 12 10 17 17 H 1.48503 * 109.47320 * 329.99553 * 14 12 10 18 18 C 1.50694 * 109.47160 * 294.14068 * 3 2 1 19 19 C 1.38235 * 120.00221 * 70.30093 * 18 3 2 20 20 C 1.38232 * 120.00156 * 179.97438 * 19 18 3 21 21 C 1.38234 * 120.00006 * 359.97438 * 20 19 18 22 22 C 1.38227 * 120.00062 * 0.27090 * 21 20 19 23 23 C 1.38234 * 120.00173 * 250.28076 * 18 3 2 24 24 H 1.09007 * 109.46849 * 69.03559 * 1 2 3 25 25 H 1.09002 * 109.47024 * 189.02992 * 1 2 3 26 26 H 1.08997 * 109.47215 * 309.03412 * 1 2 3 27 27 H 1.08999 * 109.47544 * 240.00218 * 2 1 3 28 28 H 1.08996 * 109.47386 * 120.00190 * 2 1 3 29 29 H 1.09007 * 109.46781 * 306.35833 * 4 3 2 30 30 H 1.08998 * 109.47298 * 66.35815 * 4 3 2 31 31 H 1.09000 * 109.46907 * 66.63871 * 5 4 3 32 32 H 1.08996 * 109.46992 * 186.64252 * 5 4 3 33 33 H 1.08996 * 109.46620 * 306.64335 * 5 4 3 34 34 H 0.97001 * 119.99554 * 0.02562 * 8 6 3 35 35 H 1.08998 * 109.47308 * 300.01051 * 9 8 6 36 36 H 1.09009 * 109.46640 * 60.00682 * 9 8 6 37 37 H 0.97001 * 119.99893 * 180.02562 * 13 12 10 38 38 H 1.07999 * 119.99780 * 359.97438 * 19 18 3 39 39 H 1.08008 * 119.99707 * 180.02562 * 20 19 18 40 40 H 1.08000 * 119.99931 * 180.02562 * 21 20 19 41 41 H 1.08005 * 120.00296 * 179.72417 * 22 21 20 42 42 H 1.07998 * 120.00023 * 0.02562 * 23 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5629 1.4451 0.1472 5 6 4.0575 2.8841 0.3065 6 6 1.4228 2.1936 1.1515 7 8 0.7410 3.1741 0.9402 8 7 1.6282 1.7755 2.4163 9 6 1.0286 2.5059 3.5357 10 6 1.4094 1.8388 4.8322 11 1 2.0357 0.9590 4.8233 12 6 0.9581 2.3516 6.0299 13 7 1.2908 1.7698 7.1615 14 14 -0.1258 3.8729 6.0454 15 1 -1.5517 3.4656 5.9674 16 1 0.1043 4.6320 7.3008 17 1 0.2084 4.7307 4.8801 18 6 1.6596 2.1098 -1.2965 19 6 0.3367 2.4184 -1.5530 20 6 -0.0121 3.0309 -2.7421 21 6 0.9619 3.3355 -3.6744 22 6 2.2840 3.0224 -3.4202 23 6 2.6335 2.4138 -2.2292 24 1 -0.3633 0.3677 -0.9597 25 1 -0.3633 -1.0149 0.1613 26 1 -0.3633 0.6472 0.7982 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 3.8439 0.8649 1.0263 30 1 4.0145 1.0018 -0.7403 31 1 3.7009 3.2880 1.2541 32 1 5.1473 2.8973 0.2930 33 1 3.6765 3.4921 -0.5140 34 1 2.1737 0.9914 2.5853 35 1 1.3923 3.5334 3.5356 36 1 -0.0564 2.5045 3.4309 37 1 0.9730 2.1304 8.0040 38 1 -0.4242 2.1808 -0.8244 39 1 -1.0457 3.2724 -2.9422 40 1 0.6894 3.8145 -4.6033 41 1 3.0445 3.2563 -4.1506 42 1 3.6670 2.1727 -2.0289 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427634975.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:31 Heat of formation + Delta-G solvation = -43.432854 kcal Electronic energy + Delta-G solvation = -22123.861126 eV Core-core repulsion = 19067.503968 eV Total energy + Delta-G solvation = -3056.357158 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.98502 -39.53255 -36.93206 -36.16101 -34.36153 -33.72895 -31.33179 -31.10398 -29.99779 -27.93042 -24.82105 -23.90578 -23.12620 -22.99289 -22.32967 -20.56341 -18.98061 -18.22060 -17.21102 -16.98664 -16.70638 -16.22350 -15.88378 -15.63196 -15.21700 -15.03534 -14.80338 -14.55545 -14.29256 -14.00445 -13.68622 -13.65482 -13.45151 -13.28255 -13.01569 -12.78417 -12.73360 -12.60875 -12.30080 -11.97710 -11.97058 -11.81312 -11.67299 -11.41432 -11.35631 -10.93292 -10.53365 -9.89612 -9.64361 -9.51590 -8.41617 -6.47720 0.51438 0.61618 1.28785 1.31492 1.43770 1.79343 2.25375 2.45831 2.93771 3.01960 3.51624 3.64431 3.91085 4.03263 4.19216 4.24047 4.29127 4.34361 4.41445 4.46135 4.49077 4.69406 4.74643 4.77325 4.89215 4.95982 5.00128 5.01864 5.03929 5.10126 5.13190 5.24417 5.25203 5.26650 5.32425 5.38186 5.54927 5.66268 5.70774 5.81914 6.08338 6.21085 6.53110 6.86658 7.15210 7.43831 8.73136 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.024640 B = 0.005002 C = 0.004837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.111764 B = 5595.884366 C = 5787.305690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.105 4.105 3 C -0.033 4.033 4 C -0.112 4.112 5 C -0.162 4.162 6 C 0.520 3.480 7 O -0.589 6.589 8 N -0.703 5.703 9 C 0.236 3.764 10 C -0.542 4.542 11 H 0.061 0.939 12 C 0.030 3.970 13 N -0.929 5.929 14 Si 0.933 3.067 15 H -0.265 1.265 16 H -0.272 1.272 17 H -0.265 1.265 18 C -0.071 4.071 19 C -0.105 4.105 20 C -0.143 4.143 21 C -0.125 4.125 22 C -0.131 4.131 23 C -0.119 4.119 24 H 0.065 0.935 25 H 0.073 0.927 26 H 0.025 0.975 27 H 0.101 0.899 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.110 0.890 31 H 0.022 0.978 32 H 0.081 0.919 33 H 0.059 0.941 34 H 0.405 0.595 35 H 0.007 0.993 36 H 0.007 0.993 37 H 0.272 0.728 38 H 0.104 0.896 39 H 0.127 0.873 40 H 0.142 0.858 41 H 0.148 0.852 42 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.809 -2.248 -21.940 22.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.142 4.142 3 C -0.037 4.037 4 C -0.149 4.149 5 C -0.219 4.219 6 C 0.307 3.693 7 O -0.470 6.470 8 N -0.352 5.352 9 C 0.112 3.888 10 C -0.580 4.580 11 H 0.079 0.921 12 C -0.171 4.171 13 N -0.568 5.568 14 Si 0.757 3.243 15 H -0.190 1.190 16 H -0.196 1.196 17 H -0.189 1.189 18 C -0.072 4.072 19 C -0.123 4.123 20 C -0.161 4.161 21 C -0.143 4.143 22 C -0.148 4.148 23 C -0.137 4.137 24 H 0.084 0.916 25 H 0.092 0.908 26 H 0.045 0.955 27 H 0.119 0.881 28 H 0.099 0.901 29 H 0.098 0.902 30 H 0.128 0.872 31 H 0.042 0.958 32 H 0.100 0.900 33 H 0.078 0.922 34 H 0.240 0.760 35 H 0.025 0.975 36 H 0.024 0.976 37 H 0.081 0.919 38 H 0.122 0.878 39 H 0.145 0.855 40 H 0.160 0.840 41 H 0.166 0.834 42 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 3.305 -1.550 -21.846 22.149 hybrid contribution -0.671 0.511 1.079 1.369 sum 2.634 -1.039 -20.767 20.959 Atomic orbital electron populations 1.22053 0.96450 1.02123 1.01384 1.21611 0.95820 0.92268 1.04520 1.19915 0.97754 0.96123 0.89868 1.21720 0.90586 0.97901 1.04685 1.21980 1.02269 0.96806 1.00864 1.20900 0.79779 0.84227 0.84371 1.90632 1.41842 1.29188 1.85296 1.45975 1.52161 1.31699 1.05381 1.19023 0.92834 0.92103 0.84850 1.21258 1.32968 1.13842 0.89955 0.92123 1.25532 0.96900 0.99662 0.94963 1.69972 1.46341 1.42081 0.98412 0.85932 0.79878 0.80243 0.78274 1.19045 1.19648 1.18935 1.19373 0.93752 0.99731 0.94302 1.21189 0.96439 0.98043 0.96606 1.21336 1.00473 0.99929 0.94320 1.21426 0.93262 0.99854 0.99757 1.21435 0.96828 0.99150 0.97424 1.21433 0.99757 0.98936 0.93579 0.91615 0.90839 0.95540 0.88095 0.90147 0.90176 0.87166 0.95829 0.89980 0.92248 0.75956 0.97532 0.97554 0.91851 0.87789 0.85526 0.84010 0.83426 0.83462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.27 8.36 71.98 0.60 -3.67 16 2 C -0.10 -2.41 4.84 30.60 0.15 -2.26 16 3 C -0.03 -0.91 0.39 -53.67 -0.02 -0.94 16 4 C -0.11 -2.44 4.36 30.60 0.13 -2.31 16 5 C -0.16 -4.10 8.80 71.98 0.63 -3.47 16 6 C 0.52 19.80 3.12 87.66 0.27 20.08 16 7 O -0.59 -27.19 14.29 -3.03 -0.04 -27.23 16 8 N -0.70 -28.73 5.36 -466.79 -2.50 -31.23 16 9 C 0.24 11.84 4.50 85.63 0.38 12.22 16 10 C -0.54 -30.18 9.83 25.60 0.25 -29.93 16 11 H 0.06 3.53 7.84 -2.91 -0.02 3.50 16 12 C 0.03 1.70 5.47 84.66 0.46 2.17 16 13 N -0.93 -55.67 13.96 21.45 0.30 -55.37 16 14 Si 0.93 44.86 27.47 68.60 1.88 46.75 16 15 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 16 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 17 H -0.26 -12.81 6.54 99.48 0.65 -12.16 16 18 C -0.07 -1.94 4.10 -19.87 -0.08 -2.03 16 19 C -0.10 -3.14 6.32 22.27 0.14 -3.00 16 20 C -0.14 -3.61 10.05 22.27 0.22 -3.39 16 21 C -0.13 -2.60 10.05 22.27 0.22 -2.37 16 22 C -0.13 -2.54 10.05 22.27 0.22 -2.32 16 23 C -0.12 -2.62 7.47 22.27 0.17 -2.45 16 24 H 0.06 1.67 5.64 -2.38 -0.01 1.66 16 25 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 26 H 0.03 0.86 6.62 -2.39 -0.02 0.85 16 27 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 28 H 0.08 1.74 7.73 -2.39 -0.02 1.72 16 29 H 0.08 1.67 7.74 -2.38 -0.02 1.65 16 30 H 0.11 1.67 6.60 -2.39 -0.02 1.66 16 31 H 0.02 0.75 7.32 -2.39 -0.02 0.74 16 32 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.06 1.55 5.71 -2.39 -0.01 1.53 16 34 H 0.40 14.70 7.40 -92.71 -0.69 14.01 16 35 H 0.01 0.36 7.20 -2.39 -0.02 0.34 16 36 H 0.01 0.34 7.57 -2.38 -0.02 0.33 16 37 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 38 H 0.10 3.55 5.30 -2.91 -0.02 3.53 16 39 H 0.13 2.79 8.06 -2.91 -0.02 2.76 16 40 H 0.14 2.12 8.06 -2.91 -0.02 2.09 16 41 H 0.15 1.94 8.06 -2.91 -0.02 1.92 16 42 H 0.15 2.51 5.22 -2.91 -0.02 2.49 16 Total: -1.00 -69.80 324.33 3.68 -66.12 By element: Atomic # 1 Polarization: 24.36 SS G_CDS: 0.28 Total: 24.64 kcal Atomic # 6 Polarization: -27.43 SS G_CDS: 3.77 Total: -23.67 kcal Atomic # 7 Polarization: -84.40 SS G_CDS: -2.20 Total: -86.60 kcal Atomic # 8 Polarization: -27.19 SS G_CDS: -0.04 Total: -27.23 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 1.88 Total: 46.75 kcal Total: -69.80 3.68 -66.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427634975.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.684 kcal (2) G-P(sol) polarization free energy of solvation -69.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds