Wall clock time and date at job start Mon Mar 30 2020 02:34:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46903 * 2 1 4 4 C 1.52999 * 109.46901 * 240.00006 * 2 1 3 5 5 C 1.50703 * 109.46771 * 120.00292 * 2 1 3 6 6 C 1.38234 * 120.00257 * 60.00257 * 5 2 1 7 7 C 1.38238 * 119.99675 * 180.27927 * 6 5 2 8 8 C 1.38229 * 120.00124 * 359.45911 * 7 6 5 9 9 C 1.50699 * 120.00230 * 180.28369 * 8 7 6 10 10 C 1.50691 * 109.47261 * 270.27992 * 9 8 7 11 11 O 1.21285 * 119.99959 * 359.97438 * 10 9 8 12 12 N 1.34779 * 120.00271 * 179.97438 * 10 9 8 13 13 C 1.46504 * 120.00023 * 179.97438 * 12 10 9 14 14 C 1.50703 * 109.46634 * 179.97438 * 13 12 10 15 15 H 1.08001 * 120.00467 * 0.02562 * 14 13 12 16 16 C 1.37881 * 119.99789 * 180.02562 * 14 13 12 17 17 N 1.31509 * 120.00107 * 179.97438 * 16 14 13 18 18 Si 1.86807 * 119.99896 * 0.02562 * 16 14 13 19 19 H 1.48505 * 109.46973 * 89.99510 * 18 16 14 20 20 H 1.48496 * 109.47126 * 209.99895 * 18 16 14 21 21 H 1.48507 * 109.46896 * 329.99888 * 18 16 14 22 22 C 1.38234 * 119.99957 * 0.56005 * 8 7 6 23 23 C 1.38234 * 119.99503 * 240.01857 * 5 2 1 24 24 H 1.09007 * 109.47341 * 299.99607 * 1 2 3 25 25 H 1.08998 * 109.47273 * 59.99893 * 1 2 3 26 26 H 1.09001 * 109.47339 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46371 * 179.97438 * 3 2 1 28 28 H 1.08998 * 109.47244 * 300.00125 * 3 2 1 29 29 H 1.08999 * 109.46950 * 60.00346 * 3 2 1 30 30 H 1.09001 * 109.46958 * 300.00030 * 4 2 1 31 31 H 1.08998 * 109.47075 * 59.99980 * 4 2 1 32 32 H 1.08997 * 109.46840 * 179.97438 * 4 2 1 33 33 H 1.08002 * 119.99744 * 359.97438 * 6 5 2 34 34 H 1.08004 * 119.99577 * 179.72816 * 7 6 5 35 35 H 1.09007 * 109.47085 * 30.27493 * 9 8 7 36 36 H 1.08998 * 109.47270 * 150.26989 * 9 8 7 37 37 H 0.97005 * 119.99973 * 0.02562 * 12 10 9 38 38 H 1.08995 * 109.47200 * 299.99967 * 13 12 10 39 39 H 1.09003 * 109.46824 * 60.00824 * 13 12 10 40 40 H 0.97003 * 119.99679 * 179.97438 * 17 16 14 41 41 H 1.08001 * 120.00274 * 179.72697 * 22 8 7 42 42 H 1.07997 * 120.00460 * 0.02562 * 23 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0323 -0.7105 1.2305 6 6 1.6983 -2.0340 1.4492 7 6 2.1544 -2.6839 2.5808 8 6 2.9534 -2.0137 3.4880 9 6 3.4558 -2.7241 4.7185 10 6 2.4630 -2.5513 5.8388 11 8 1.4476 -1.9136 5.6563 12 7 2.7034 -3.1054 7.0437 13 6 1.7384 -2.9369 8.1331 14 6 2.2402 -3.6485 9.3631 15 1 3.1837 -4.1733 9.3363 16 6 1.4947 -3.6294 10.5229 17 7 1.9323 -4.2508 11.5961 18 14 -0.1376 -2.7222 10.5692 19 1 -1.2300 -3.6484 10.1763 20 1 -0.3855 -2.2192 11.9442 21 1 -0.0949 -1.5778 9.6237 22 6 3.2870 -0.6901 3.2695 23 6 2.8267 -0.0386 2.1406 24 1 -0.3634 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 3.1300 1.4424 0.0005 28 1 1.6766 1.9563 -0.8899 29 1 1.6766 1.9563 0.8900 30 1 1.6766 -1.7489 -1.2492 31 1 1.6766 -0.2074 -2.1392 32 1 3.1299 -0.7208 -1.2495 33 1 1.0771 -2.5587 0.7384 34 1 1.8898 -3.7166 2.7539 35 1 3.5773 -3.7854 4.5012 36 1 4.4159 -2.3019 5.0152 37 1 3.5156 -3.6151 7.1899 38 1 1.6176 -1.8757 8.3507 39 1 0.7781 -3.3586 7.8363 40 1 1.4080 -4.2371 12.4121 41 1 3.9077 -0.1652 3.9806 42 1 3.0870 0.9956 1.9701 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427648257.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:14 Heat of formation + Delta-G solvation = -38.204103 kcal Electronic energy + Delta-G solvation = -20529.029129 eV Core-core repulsion = 17472.898706 eV Total energy + Delta-G solvation = -3056.130423 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.06379 -38.80200 -36.52712 -34.25602 -32.41472 -31.85899 -31.04654 -28.44855 -27.55189 -27.43764 -26.60201 -22.70435 -22.30207 -21.55547 -19.85003 -19.22207 -17.28868 -16.59683 -15.91455 -15.59471 -15.34785 -14.75883 -14.45480 -14.44801 -14.12505 -13.81737 -13.71269 -13.39209 -13.02915 -12.72306 -12.57478 -12.36515 -12.22104 -11.98724 -11.87372 -11.73297 -11.65799 -11.30691 -11.11295 -11.00699 -10.76166 -10.65156 -10.54155 -9.97097 -9.49982 -9.25435 -8.78588 -8.77363 -8.38924 -8.13273 -6.21767 -4.23886 1.42457 1.54007 3.24824 3.28326 3.33391 3.42344 3.72832 4.22485 4.33723 4.44689 4.58066 4.81262 4.87049 4.99012 5.08726 5.13167 5.13654 5.33158 5.40767 5.44908 5.48299 5.55214 5.57204 5.62785 5.66415 5.67100 5.73982 5.82276 5.86811 6.05766 6.11750 6.14066 6.17366 6.53735 6.68252 6.73622 6.82023 7.07932 7.11229 7.24083 7.40138 8.14221 8.52774 8.75388 8.96195 9.38737 10.90196 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.034316 B = 0.003178 C = 0.003065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.742462 B = 8809.337250 C = 9134.078677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.029 4.029 3 C -0.144 4.144 4 C -0.137 4.137 5 C -0.077 4.077 6 C -0.115 4.115 7 C -0.103 4.103 8 C -0.059 4.059 9 C -0.106 4.106 10 C 0.501 3.499 11 O -0.550 6.550 12 N -0.708 5.708 13 C 0.221 3.779 14 C -0.543 4.543 15 H 0.080 0.920 16 C 0.077 3.923 17 N -0.893 5.893 18 Si 0.877 3.123 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.261 1.261 22 C -0.104 4.104 23 C -0.121 4.121 24 H 0.057 0.943 25 H 0.055 0.945 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.055 0.945 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.117 0.883 34 H 0.119 0.881 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.396 0.604 38 H 0.024 0.976 39 H 0.020 0.980 40 H 0.268 0.732 41 H 0.119 0.881 42 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.802 6.915 -24.322 25.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.029 4.029 3 C -0.201 4.201 4 C -0.194 4.194 5 C -0.078 4.078 6 C -0.133 4.133 7 C -0.121 4.121 8 C -0.060 4.060 9 C -0.146 4.146 10 C 0.285 3.715 11 O -0.429 6.429 12 N -0.357 5.357 13 C 0.098 3.902 14 C -0.581 4.581 15 H 0.098 0.902 16 C -0.126 4.126 17 N -0.530 5.530 18 Si 0.703 3.297 19 H -0.198 1.198 20 H -0.209 1.209 21 H -0.185 1.185 22 C -0.122 4.122 23 C -0.139 4.139 24 H 0.076 0.924 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.135 0.865 34 H 0.137 0.863 35 H 0.117 0.883 36 H 0.117 0.883 37 H 0.230 0.770 38 H 0.042 0.958 39 H 0.037 0.963 40 H 0.077 0.923 41 H 0.137 0.863 42 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 2.016 7.325 -24.219 25.382 hybrid contribution -0.467 0.059 0.463 0.660 sum 1.549 7.383 -23.756 24.925 Atomic orbital electron populations 1.21893 0.93788 1.02123 1.01799 1.19477 0.95669 0.94952 0.92791 1.21958 1.01123 0.95120 1.01872 1.21879 1.01156 1.00215 0.96162 1.19720 0.98043 0.94066 0.95924 1.20845 1.00463 0.94368 0.97665 1.20944 0.97098 0.99986 0.94091 1.19323 0.97746 0.94287 0.94607 1.20722 0.99263 1.02287 0.92326 1.20412 0.87331 0.80028 0.83695 1.90674 1.28305 1.41249 1.82661 1.46199 1.25030 1.53176 1.11254 1.19476 0.88631 0.97114 0.84940 1.21104 1.08494 1.34491 0.94029 0.90242 1.24800 0.97976 0.94716 0.95149 1.69881 1.38782 1.42360 1.01984 0.86819 0.83997 0.81121 0.77773 1.19845 1.20884 1.18518 1.20974 1.00176 0.93909 0.97105 1.21064 0.98582 0.99812 0.94435 0.92352 0.92556 0.92425 0.92299 0.92559 0.92189 0.92453 0.92559 0.92550 0.86495 0.86340 0.88345 0.88340 0.77012 0.95791 0.96252 0.92264 0.86341 0.85932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 8.29 37.16 0.31 -0.94 16 2 C -0.03 -0.26 0.85 -155.66 -0.13 -0.40 16 3 C -0.14 -1.16 7.13 37.16 0.27 -0.90 16 4 C -0.14 -1.07 8.29 37.16 0.31 -0.77 16 5 C -0.08 -0.90 4.76 -104.62 -0.50 -1.40 16 6 C -0.12 -1.41 8.71 -39.58 -0.34 -1.75 16 7 C -0.10 -1.39 9.70 -39.58 -0.38 -1.78 16 8 C -0.06 -0.84 4.37 -104.63 -0.46 -1.30 16 9 C -0.11 -1.45 5.83 -29.04 -0.17 -1.62 16 10 C 0.50 9.57 7.82 -10.99 -0.09 9.49 16 11 O -0.55 -12.81 16.03 5.55 0.09 -12.72 16 12 N -0.71 -14.36 5.55 -61.47 -0.34 -14.71 16 13 C 0.22 5.49 4.50 -5.19 -0.02 5.47 16 14 C -0.54 -14.99 9.83 -34.44 -0.34 -15.33 16 15 H 0.08 2.27 7.84 -52.49 -0.41 1.86 16 16 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 17 N -0.89 -26.62 13.96 55.43 0.77 -25.85 16 18 Si 0.88 21.66 27.47 -169.99 -4.67 16.99 16 19 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.26 -6.44 6.54 56.52 0.37 -6.07 16 22 C -0.10 -1.40 9.70 -39.58 -0.38 -1.78 16 23 C -0.12 -1.48 8.98 -39.58 -0.36 -1.83 16 24 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.51 7.39 -51.93 -0.38 0.13 16 27 H 0.06 0.45 7.51 -51.93 -0.39 0.06 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.51 7.51 -51.93 -0.39 0.12 16 30 H 0.06 0.44 7.39 -51.93 -0.38 0.06 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.12 1.20 7.10 -52.49 -0.37 0.83 16 34 H 0.12 1.46 8.06 -52.48 -0.42 1.03 16 35 H 0.10 1.12 8.09 -51.93 -0.42 0.70 16 36 H 0.10 1.12 8.09 -51.93 -0.42 0.70 16 37 H 0.40 6.97 8.32 -40.82 -0.34 6.64 16 38 H 0.02 0.63 7.20 -51.93 -0.37 0.26 16 39 H 0.02 0.51 7.57 -51.93 -0.39 0.11 16 40 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 41 H 0.12 1.46 8.06 -52.49 -0.42 1.03 16 42 H 0.12 1.26 5.89 -52.49 -0.31 0.95 16 LS Contribution 343.04 15.07 5.17 5.17 Total: -1.00 -32.82 343.04 -8.08 -40.90 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -6.71 Total: 2.95 kcal Atomic # 6 Polarization: -10.34 SS G_CDS: -2.39 Total: -12.73 kcal Atomic # 7 Polarization: -40.99 SS G_CDS: 0.43 Total: -40.55 kcal Atomic # 8 Polarization: -12.81 SS G_CDS: 0.09 Total: -12.72 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.67 Total: 16.99 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.82 -8.08 -40.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427648257.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.695 kcal (2) G-P(sol) polarization free energy of solvation -32.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds