Wall clock time and date at job start Mon Mar 30 2020 02:34:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46903 * 2 1 4 4 C 1.52999 * 109.46901 * 240.00006 * 2 1 3 5 5 C 1.50703 * 109.46771 * 120.00292 * 2 1 3 6 6 C 1.38234 * 120.00257 * 60.00257 * 5 2 1 7 7 C 1.38238 * 119.99675 * 180.27927 * 6 5 2 8 8 C 1.38229 * 120.00124 * 359.45911 * 7 6 5 9 9 C 1.50699 * 120.00230 * 180.28369 * 8 7 6 10 10 C 1.50691 * 109.47261 * 270.27992 * 9 8 7 11 11 O 1.21285 * 119.99959 * 359.97438 * 10 9 8 12 12 N 1.34779 * 120.00271 * 179.97438 * 10 9 8 13 13 C 1.46504 * 120.00023 * 179.97438 * 12 10 9 14 14 C 1.50703 * 109.46634 * 179.97438 * 13 12 10 15 15 H 1.08001 * 120.00467 * 0.02562 * 14 13 12 16 16 C 1.37881 * 119.99789 * 180.02562 * 14 13 12 17 17 N 1.31509 * 120.00107 * 179.97438 * 16 14 13 18 18 Si 1.86807 * 119.99896 * 0.02562 * 16 14 13 19 19 H 1.48505 * 109.46973 * 89.99510 * 18 16 14 20 20 H 1.48496 * 109.47126 * 209.99895 * 18 16 14 21 21 H 1.48507 * 109.46896 * 329.99888 * 18 16 14 22 22 C 1.38234 * 119.99957 * 0.56005 * 8 7 6 23 23 C 1.38234 * 119.99503 * 240.01857 * 5 2 1 24 24 H 1.09007 * 109.47341 * 299.99607 * 1 2 3 25 25 H 1.08998 * 109.47273 * 59.99893 * 1 2 3 26 26 H 1.09001 * 109.47339 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46371 * 179.97438 * 3 2 1 28 28 H 1.08998 * 109.47244 * 300.00125 * 3 2 1 29 29 H 1.08999 * 109.46950 * 60.00346 * 3 2 1 30 30 H 1.09001 * 109.46958 * 300.00030 * 4 2 1 31 31 H 1.08998 * 109.47075 * 59.99980 * 4 2 1 32 32 H 1.08997 * 109.46840 * 179.97438 * 4 2 1 33 33 H 1.08002 * 119.99744 * 359.97438 * 6 5 2 34 34 H 1.08004 * 119.99577 * 179.72816 * 7 6 5 35 35 H 1.09007 * 109.47085 * 30.27493 * 9 8 7 36 36 H 1.08998 * 109.47270 * 150.26989 * 9 8 7 37 37 H 0.97005 * 119.99973 * 0.02562 * 12 10 9 38 38 H 1.08995 * 109.47200 * 299.99967 * 13 12 10 39 39 H 1.09003 * 109.46824 * 60.00824 * 13 12 10 40 40 H 0.97003 * 119.99679 * 179.97438 * 17 16 14 41 41 H 1.08001 * 120.00274 * 179.72697 * 22 8 7 42 42 H 1.07997 * 120.00460 * 0.02562 * 23 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0323 -0.7105 1.2305 6 6 1.6983 -2.0340 1.4492 7 6 2.1544 -2.6839 2.5808 8 6 2.9534 -2.0137 3.4880 9 6 3.4558 -2.7241 4.7185 10 6 2.4630 -2.5513 5.8388 11 8 1.4476 -1.9136 5.6563 12 7 2.7034 -3.1054 7.0437 13 6 1.7384 -2.9369 8.1331 14 6 2.2402 -3.6485 9.3631 15 1 3.1837 -4.1733 9.3363 16 6 1.4947 -3.6294 10.5229 17 7 1.9323 -4.2508 11.5961 18 14 -0.1376 -2.7222 10.5692 19 1 -1.2300 -3.6484 10.1763 20 1 -0.3855 -2.2192 11.9442 21 1 -0.0949 -1.5778 9.6237 22 6 3.2870 -0.6901 3.2695 23 6 2.8267 -0.0386 2.1406 24 1 -0.3634 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 3.1300 1.4424 0.0005 28 1 1.6766 1.9563 -0.8899 29 1 1.6766 1.9563 0.8900 30 1 1.6766 -1.7489 -1.2492 31 1 1.6766 -0.2074 -2.1392 32 1 3.1299 -0.7208 -1.2495 33 1 1.0771 -2.5587 0.7384 34 1 1.8898 -3.7166 2.7539 35 1 3.5773 -3.7854 4.5012 36 1 4.4159 -2.3019 5.0152 37 1 3.5156 -3.6151 7.1899 38 1 1.6176 -1.8757 8.3507 39 1 0.7781 -3.3586 7.8363 40 1 1.4080 -4.2371 12.4121 41 1 3.9077 -0.1652 3.9806 42 1 3.0870 0.9956 1.9701 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427648257.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:13 Heat of formation + Delta-G solvation = -57.933637 kcal Electronic energy + Delta-G solvation = -20529.884666 eV Core-core repulsion = 17472.898706 eV Total energy + Delta-G solvation = -3056.985960 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.11756 -40.18506 -37.41776 -36.11514 -34.42078 -32.99296 -31.97331 -30.19649 -28.22731 -28.08147 -27.90380 -24.34436 -23.23634 -22.90414 -21.42327 -20.04157 -19.17144 -17.75921 -17.51292 -16.87375 -16.72306 -16.01649 -15.84581 -15.67999 -15.12419 -14.89525 -14.67429 -14.56439 -14.37921 -14.30816 -14.12896 -13.51821 -13.16670 -13.00926 -12.82180 -12.82029 -12.67645 -12.53350 -12.52288 -12.16243 -11.95413 -11.80834 -11.66974 -11.47662 -11.33114 -10.93527 -10.86062 -9.92641 -9.74613 -9.37642 -8.41585 -6.48317 0.44497 0.57243 1.30674 1.33067 1.45680 1.75401 2.26352 2.47111 2.93739 2.98654 3.65511 3.82995 3.83632 4.10696 4.13576 4.16362 4.20397 4.41612 4.45922 4.57842 4.65775 4.71467 4.79225 4.79929 4.86016 4.91253 5.01503 5.02521 5.04297 5.08142 5.19064 5.22411 5.24894 5.27671 5.39065 5.45979 5.52919 5.61748 5.73871 5.78340 6.07907 6.17555 6.52961 6.85993 7.14776 7.43561 8.73155 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.034316 B = 0.003178 C = 0.003065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.742462 B = 8809.337250 C = 9134.078677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.030 4.030 3 C -0.143 4.143 4 C -0.134 4.134 5 C -0.079 4.079 6 C -0.123 4.123 7 C -0.119 4.119 8 C -0.082 4.082 9 C -0.092 4.092 10 C 0.501 3.499 11 O -0.593 6.593 12 N -0.707 5.707 13 C 0.232 3.768 14 C -0.546 4.546 15 H 0.061 0.939 16 C 0.027 3.973 17 N -0.930 5.930 18 Si 0.936 3.064 19 H -0.265 1.265 20 H -0.272 1.272 21 H -0.263 1.263 22 C -0.119 4.119 23 C -0.130 4.130 24 H 0.042 0.958 25 H 0.073 0.927 26 H 0.055 0.945 27 H 0.062 0.938 28 H 0.070 0.930 29 H 0.051 0.949 30 H 0.056 0.944 31 H 0.071 0.929 32 H 0.054 0.946 33 H 0.133 0.867 34 H 0.125 0.875 35 H 0.126 0.874 36 H 0.126 0.874 37 H 0.410 0.590 38 H 0.010 0.990 39 H 0.009 0.991 40 H 0.273 0.727 41 H 0.125 0.875 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.677 7.581 -26.297 27.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.030 4.030 3 C -0.200 4.200 4 C -0.191 4.191 5 C -0.079 4.079 6 C -0.141 4.141 7 C -0.137 4.137 8 C -0.083 4.083 9 C -0.131 4.131 10 C 0.289 3.711 11 O -0.475 6.475 12 N -0.357 5.357 13 C 0.108 3.892 14 C -0.584 4.584 15 H 0.079 0.921 16 C -0.174 4.174 17 N -0.569 5.569 18 Si 0.760 3.240 19 H -0.190 1.190 20 H -0.197 1.197 21 H -0.187 1.187 22 C -0.137 4.137 23 C -0.148 4.148 24 H 0.061 0.939 25 H 0.092 0.908 26 H 0.074 0.926 27 H 0.081 0.919 28 H 0.089 0.911 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.090 0.910 32 H 0.073 0.927 33 H 0.151 0.849 34 H 0.143 0.857 35 H 0.144 0.856 36 H 0.144 0.856 37 H 0.246 0.754 38 H 0.028 0.972 39 H 0.026 0.974 40 H 0.082 0.918 41 H 0.143 0.857 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 1.924 7.976 -26.209 27.463 hybrid contribution -0.389 -0.148 1.012 1.094 sum 1.535 7.828 -25.197 26.430 Atomic orbital electron populations 1.21896 0.93670 1.02074 1.01929 1.19552 0.95711 0.95486 0.92232 1.21956 1.01378 0.94419 1.02259 1.21856 1.01049 1.00248 0.95959 1.20085 0.97171 0.94039 0.96605 1.21102 1.00486 0.94813 0.97670 1.21182 0.97260 1.00587 0.94626 1.19469 0.98883 0.94848 0.95081 1.20706 0.98339 1.04312 0.89780 1.21336 0.87557 0.78272 0.83977 1.90650 1.30511 1.42967 1.83333 1.46061 1.24857 1.53901 1.10920 1.19063 0.89174 0.95557 0.85376 1.21303 1.07815 1.34108 0.95169 0.92091 1.25591 1.01350 0.95523 0.94903 1.69977 1.40395 1.43825 1.02734 0.85876 0.80082 0.79897 0.78140 1.19002 1.19667 1.18746 1.21213 1.00654 0.94011 0.97843 1.21341 0.98542 1.00674 0.94212 0.93867 0.90773 0.92594 0.91928 0.91065 0.92946 0.92447 0.91026 0.92700 0.84894 0.85693 0.85621 0.85641 0.75420 0.97247 0.97356 0.91819 0.85707 0.84340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 8.29 71.98 0.60 -1.65 16 2 C -0.03 -0.49 0.85 -52.93 -0.05 -0.53 16 3 C -0.14 -2.02 7.13 71.98 0.51 -1.51 16 4 C -0.13 -1.78 8.29 71.98 0.60 -1.19 16 5 C -0.08 -1.73 4.76 -19.87 -0.09 -1.83 16 6 C -0.12 -2.84 8.71 22.27 0.19 -2.65 16 7 C -0.12 -3.08 9.70 22.27 0.22 -2.86 16 8 C -0.08 -2.24 4.37 -19.87 -0.09 -2.33 16 9 C -0.09 -2.34 5.83 29.10 0.17 -2.17 16 10 C 0.50 18.74 7.82 87.65 0.69 19.42 16 11 O -0.59 -27.58 16.03 -3.04 -0.05 -27.63 16 12 N -0.71 -28.31 5.55 -466.78 -2.59 -30.90 16 13 C 0.23 11.58 4.50 85.63 0.38 11.96 16 14 C -0.55 -30.38 9.83 25.60 0.25 -30.13 16 15 H 0.06 3.54 7.84 -2.91 -0.02 3.51 16 16 C 0.03 1.52 5.47 84.66 0.46 1.99 16 17 N -0.93 -55.84 13.96 21.45 0.30 -55.54 16 18 Si 0.94 44.67 27.47 68.60 1.88 46.55 16 19 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 20 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 21 H -0.26 -12.56 6.54 99.48 0.65 -11.91 16 22 C -0.12 -3.11 9.70 22.27 0.22 -2.89 16 23 C -0.13 -3.03 8.98 22.27 0.20 -2.83 16 24 H 0.04 0.82 8.14 -2.38 -0.02 0.80 16 25 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.05 0.91 7.39 -2.39 -0.02 0.89 16 27 H 0.06 0.83 7.51 -2.38 -0.02 0.81 16 28 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.05 0.82 7.51 -2.39 -0.02 0.80 16 30 H 0.06 0.76 7.39 -2.39 -0.02 0.74 16 31 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.13 2.53 7.10 -2.91 -0.02 2.51 16 34 H 0.13 2.94 8.06 -2.91 -0.02 2.92 16 35 H 0.13 2.52 8.09 -2.38 -0.02 2.50 16 36 H 0.13 2.52 8.09 -2.39 -0.02 2.50 16 37 H 0.41 14.07 8.32 -92.70 -0.77 13.30 16 38 H 0.01 0.51 7.20 -2.39 -0.02 0.49 16 39 H 0.01 0.44 7.57 -2.39 -0.02 0.42 16 40 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 41 H 0.12 2.95 8.06 -2.91 -0.02 2.93 16 42 H 0.14 2.66 5.89 -2.91 -0.02 2.64 16 Total: -1.00 -70.44 343.04 3.98 -66.46 By element: Atomic # 1 Polarization: 20.08 SS G_CDS: 0.17 Total: 20.25 kcal Atomic # 6 Polarization: -23.46 SS G_CDS: 4.26 Total: -19.19 kcal Atomic # 7 Polarization: -84.15 SS G_CDS: -2.29 Total: -86.44 kcal Atomic # 8 Polarization: -27.58 SS G_CDS: -0.05 Total: -27.63 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 1.88 Total: 46.55 kcal Total: -70.44 3.98 -66.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427648257.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.531 kcal (2) G-P(sol) polarization free energy of solvation -70.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds