Wall clock time and date at job start Mon Mar 30 2020 02:47:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.47039 * 2 1 4 4 C 1.52999 * 109.46964 * 239.99981 * 2 1 3 5 5 C 1.53003 * 109.46829 * 185.92622 * 4 2 1 6 6 H 1.08995 * 109.47193 * 305.41708 * 5 4 2 7 7 C 1.50697 * 109.47187 * 185.41569 * 5 4 2 8 8 O 1.21278 * 120.00087 * 240.00227 * 7 5 4 9 9 N 1.34774 * 119.99975 * 59.99724 * 7 5 4 10 10 C 1.46503 * 120.00143 * 180.02562 * 9 7 5 11 11 C 1.50705 * 109.47172 * 180.02562 * 10 9 7 12 12 H 1.08001 * 120.00062 * 359.97438 * 11 10 9 13 13 C 1.37876 * 120.00003 * 180.02562 * 11 10 9 14 14 N 1.31516 * 120.00088 * 359.97438 * 13 11 10 15 15 Si 1.86794 * 119.99870 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.47575 * 89.99901 * 15 13 11 17 17 H 1.48504 * 109.46989 * 209.99806 * 15 13 11 18 18 H 1.48501 * 109.47498 * 329.99614 * 15 13 11 19 19 C 1.50705 * 109.47009 * 65.41744 * 5 4 2 20 20 C 1.38237 * 119.99869 * 54.45746 * 19 5 4 21 21 C 1.38239 * 119.99529 * 179.78885 * 20 19 5 22 22 C 1.38235 * 120.00283 * 0.44131 * 21 20 19 23 23 C 1.38234 * 119.99695 * 359.81274 * 22 21 20 24 24 C 1.38230 * 119.99859 * 234.73057 * 19 5 4 25 25 H 1.08997 * 109.46866 * 55.05763 * 1 2 3 26 26 H 1.08999 * 109.46537 * 175.05507 * 1 2 3 27 27 H 1.08997 * 109.46877 * 295.05200 * 1 2 3 28 28 H 1.09003 * 109.46942 * 119.99448 * 2 1 3 29 29 H 1.09005 * 109.47226 * 60.00081 * 3 2 1 30 30 H 1.08999 * 109.47252 * 179.97438 * 3 2 1 31 31 H 1.09007 * 109.47339 * 300.00033 * 3 2 1 32 32 H 1.08998 * 109.47204 * 305.92202 * 4 2 1 33 33 H 1.08996 * 109.46927 * 65.93068 * 4 2 1 34 34 H 0.97003 * 119.99979 * 0.02562 * 9 7 5 35 35 H 1.09003 * 109.47045 * 300.00308 * 10 9 7 36 36 H 1.08995 * 109.47173 * 60.00301 * 10 9 7 37 37 H 0.96991 * 120.00072 * 180.02562 * 14 13 11 38 38 H 1.07997 * 120.00243 * 0.02562 * 20 19 5 39 39 H 1.08001 * 119.99445 * 180.27732 * 21 20 19 40 40 H 1.07992 * 120.00093 * 179.83773 * 22 21 20 41 41 H 1.08002 * 120.00012 * 180.02562 * 23 22 21 42 42 H 1.08000 * 120.00031 * 359.97438 * 24 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5628 -0.8515 -1.1770 6 1 4.0049 0.1332 -1.0257 7 6 4.0782 -1.4411 -2.4645 8 8 4.6884 -2.4891 -2.4500 9 7 3.8609 -0.8039 -3.6320 10 6 4.3615 -1.3773 -4.8838 11 6 3.9889 -0.4767 -6.0333 12 1 3.4343 0.4317 -5.8498 13 6 4.3551 -0.8130 -7.3192 14 7 5.0300 -1.9195 -7.5427 15 14 3.8939 0.3036 -8.7439 16 1 4.9737 1.2993 -8.9622 17 1 3.7154 -0.5104 -9.9731 18 1 2.6259 1.0095 -8.4292 19 6 3.9359 -1.7517 -0.0274 20 6 3.3954 -3.0210 0.0602 21 6 3.7411 -3.8484 1.1123 22 6 4.6202 -3.4031 2.0818 23 6 5.1566 -2.1319 1.9970 24 6 4.8143 -1.3061 0.9425 25 1 -0.3633 0.5886 -0.8424 26 1 -0.3632 -1.0239 -0.0886 27 1 -0.3633 0.4351 0.9310 28 1 1.8934 -0.5138 0.8901 29 1 1.6767 1.9563 0.8900 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.5927 -1.7137 -1.3038 33 1 1.7660 -0.1498 -2.1360 34 1 3.3731 0.0345 -3.6435 35 1 5.4463 -1.4705 -4.8325 36 1 3.9190 -2.3618 -5.0349 37 1 5.2880 -2.1559 -8.4473 38 1 2.7061 -3.3677 -0.6955 39 1 3.3223 -4.8417 1.1783 40 1 4.8882 -4.0485 2.9051 41 1 5.8438 -1.7841 2.7541 42 1 5.2335 -0.3130 0.8762 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427650946.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:21 Heat of formation + Delta-G solvation = -42.920991 kcal Electronic energy + Delta-G solvation = -21268.516301 eV Core-core repulsion = 18212.181339 eV Total energy + Delta-G solvation = -3056.334962 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.05354 -38.16759 -36.54317 -34.17775 -32.60928 -32.21957 -30.75156 -28.93812 -27.24139 -27.02256 -24.61414 -22.81055 -22.38005 -21.29883 -19.95979 -19.22941 -17.19074 -16.70664 -15.77118 -15.56358 -15.33196 -14.80432 -14.57757 -14.26752 -14.11078 -13.67302 -13.58160 -13.21749 -12.96413 -12.57497 -12.36915 -12.24328 -12.10060 -11.88759 -11.78101 -11.50564 -11.03184 -11.01784 -10.93783 -10.88086 -10.81836 -10.52161 -10.44432 -10.29848 -9.39009 -9.01888 -8.73292 -8.69679 -8.47708 -7.85627 -6.16247 -4.23193 1.52246 1.59739 3.24077 3.30260 3.32547 3.38300 3.86637 4.22135 4.40656 4.66277 4.82660 4.89118 4.99732 5.05817 5.13260 5.19874 5.24734 5.35482 5.45749 5.56265 5.58761 5.64929 5.72114 5.74573 5.80540 5.85360 5.92364 6.00944 6.15339 6.15622 6.21472 6.30834 6.38278 6.60796 6.66860 6.82523 7.16399 7.32582 7.45956 7.52980 7.67462 7.97841 8.64610 8.79176 9.12856 9.43663 10.93991 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.019039 B = 0.004473 C = 0.003882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.295875 B = 6257.639458 C = 7210.895459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.095 4.095 3 C -0.150 4.150 4 C -0.104 4.104 5 C -0.074 4.074 6 H 0.100 0.900 7 C 0.502 3.498 8 O -0.547 6.547 9 N -0.712 5.712 10 C 0.250 3.750 11 C -0.542 4.542 12 H 0.063 0.937 13 C 0.064 3.936 14 N -0.886 5.886 15 Si 0.903 3.097 16 H -0.279 1.279 17 H -0.284 1.284 18 H -0.273 1.273 19 C -0.047 4.047 20 C -0.087 4.087 21 C -0.122 4.122 22 C -0.127 4.127 23 C -0.125 4.125 24 C -0.115 4.115 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.051 0.949 28 H 0.073 0.927 29 H 0.051 0.949 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.389 0.611 35 H 0.026 0.974 36 H 0.026 0.974 37 H 0.266 0.734 38 H 0.118 0.882 39 H 0.118 0.882 40 H 0.116 0.884 41 H 0.117 0.883 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.489 3.824 18.509 19.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.113 4.113 3 C -0.207 4.207 4 C -0.142 4.142 5 C -0.096 4.096 6 H 0.118 0.882 7 C 0.286 3.714 8 O -0.425 6.425 9 N -0.360 5.360 10 C 0.129 3.871 11 C -0.581 4.581 12 H 0.081 0.919 13 C -0.140 4.140 14 N -0.523 5.523 15 Si 0.730 3.270 16 H -0.205 1.205 17 H -0.210 1.210 18 H -0.197 1.197 19 C -0.048 4.048 20 C -0.105 4.105 21 C -0.140 4.140 22 C -0.145 4.145 23 C -0.143 4.143 24 C -0.134 4.134 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.091 0.909 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.222 0.778 35 H 0.044 0.956 36 H 0.044 0.956 37 H 0.075 0.925 38 H 0.136 0.864 39 H 0.136 0.864 40 H 0.134 0.866 41 H 0.135 0.865 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -5.958 2.948 18.316 19.485 hybrid contribution -0.291 0.908 -0.953 1.348 sum -6.249 3.856 17.363 18.852 Atomic orbital electron populations 1.21831 0.95266 1.01759 1.01525 1.21109 0.95546 0.96288 0.98391 1.21907 1.01212 0.95921 1.01670 1.21688 0.92320 1.01567 0.98584 1.20489 0.97522 0.99395 0.92177 0.88185 1.20275 0.80727 0.85359 0.85004 1.90679 1.41663 1.23141 1.87053 1.46452 1.56259 1.25530 1.07744 1.19092 0.95077 0.94457 0.78430 1.21225 1.37383 1.07937 0.91535 0.91931 1.24947 0.94771 0.95339 0.98923 1.69975 1.37500 1.23210 1.21618 0.86429 0.78865 0.80276 0.81426 1.20465 1.21009 1.19738 1.19305 0.96502 0.94606 0.94344 1.20924 0.99326 0.93223 0.97014 1.21078 0.98603 0.99426 0.94903 1.21051 0.98153 0.96169 0.99176 1.21011 1.00313 0.94488 0.98456 1.20980 0.97869 0.99830 0.94673 0.92595 0.92724 0.92945 0.90893 0.92952 0.92477 0.92461 0.91148 0.90761 0.77783 0.95638 0.95592 0.92464 0.86381 0.86422 0.86605 0.86484 0.86457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.19 37.16 0.34 -1.01 16 2 C -0.09 -0.97 2.82 -90.62 -0.26 -1.22 16 3 C -0.15 -1.39 8.97 37.16 0.33 -1.06 16 4 C -0.10 -1.28 3.94 -26.73 -0.11 -1.39 16 5 C -0.07 -1.09 2.26 -92.92 -0.21 -1.29 16 6 H 0.10 1.29 6.11 -51.93 -0.32 0.98 16 7 C 0.50 10.06 7.05 -10.99 -0.08 9.98 16 8 O -0.55 -13.32 15.39 5.56 0.09 -13.23 16 9 N -0.71 -14.95 5.41 -61.47 -0.33 -15.28 16 10 C 0.25 6.65 5.43 -5.19 -0.03 6.63 16 11 C -0.54 -14.70 9.28 -34.44 -0.32 -15.02 16 12 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 13 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 14 N -0.89 -26.19 13.29 55.43 0.74 -25.45 16 15 Si 0.90 20.83 29.54 -169.99 -5.02 15.81 16 16 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 17 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 18 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 19 C -0.05 -0.69 3.23 -104.62 -0.34 -1.03 16 20 C -0.09 -1.30 8.18 -39.58 -0.32 -1.62 16 21 C -0.12 -1.61 10.05 -39.58 -0.40 -2.00 16 22 C -0.13 -1.54 10.05 -39.58 -0.40 -1.93 16 23 C -0.12 -1.51 10.05 -39.58 -0.40 -1.90 16 24 C -0.12 -1.53 9.67 -39.58 -0.38 -1.91 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.07 0.79 7.22 -51.93 -0.37 0.42 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.53 6.49 -51.93 -0.34 0.20 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.91 6.90 -51.93 -0.36 0.55 16 33 H 0.07 0.91 7.42 -51.93 -0.39 0.52 16 34 H 0.39 7.02 7.68 -40.82 -0.31 6.71 16 35 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 38 H 0.12 1.80 7.21 -52.49 -0.38 1.42 16 39 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 40 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 41 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 42 H 0.12 1.34 7.95 -52.49 -0.42 0.92 16 LS Contribution 344.60 15.07 5.19 5.19 Total: -1.00 -32.07 344.60 -8.64 -40.71 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: -6.64 Total: 5.36 kcal Atomic # 6 Polarization: -10.46 SS G_CDS: -2.65 Total: -13.12 kcal Atomic # 7 Polarization: -41.14 SS G_CDS: 0.40 Total: -40.73 kcal Atomic # 8 Polarization: -13.32 SS G_CDS: 0.09 Total: -13.23 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.07 -8.64 -40.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427650946.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.210 kcal (2) G-P(sol) polarization free energy of solvation -32.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds