Wall clock time and date at job start Mon Mar 30 2020 02:47:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.47039 * 2 1 4 4 C 1.52999 * 109.46964 * 239.99981 * 2 1 3 5 5 C 1.53003 * 109.46829 * 185.92622 * 4 2 1 6 6 H 1.08995 * 109.47193 * 305.41708 * 5 4 2 7 7 C 1.50697 * 109.47187 * 185.41569 * 5 4 2 8 8 O 1.21278 * 120.00087 * 240.00227 * 7 5 4 9 9 N 1.34774 * 119.99975 * 59.99724 * 7 5 4 10 10 C 1.46503 * 120.00143 * 180.02562 * 9 7 5 11 11 C 1.50705 * 109.47172 * 180.02562 * 10 9 7 12 12 H 1.08001 * 120.00062 * 359.97438 * 11 10 9 13 13 C 1.37876 * 120.00003 * 180.02562 * 11 10 9 14 14 N 1.31516 * 120.00088 * 359.97438 * 13 11 10 15 15 Si 1.86794 * 119.99870 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.47575 * 89.99901 * 15 13 11 17 17 H 1.48504 * 109.46989 * 209.99806 * 15 13 11 18 18 H 1.48501 * 109.47498 * 329.99614 * 15 13 11 19 19 C 1.50705 * 109.47009 * 65.41744 * 5 4 2 20 20 C 1.38237 * 119.99869 * 54.45746 * 19 5 4 21 21 C 1.38239 * 119.99529 * 179.78885 * 20 19 5 22 22 C 1.38235 * 120.00283 * 0.44131 * 21 20 19 23 23 C 1.38234 * 119.99695 * 359.81274 * 22 21 20 24 24 C 1.38230 * 119.99859 * 234.73057 * 19 5 4 25 25 H 1.08997 * 109.46866 * 55.05763 * 1 2 3 26 26 H 1.08999 * 109.46537 * 175.05507 * 1 2 3 27 27 H 1.08997 * 109.46877 * 295.05200 * 1 2 3 28 28 H 1.09003 * 109.46942 * 119.99448 * 2 1 3 29 29 H 1.09005 * 109.47226 * 60.00081 * 3 2 1 30 30 H 1.08999 * 109.47252 * 179.97438 * 3 2 1 31 31 H 1.09007 * 109.47339 * 300.00033 * 3 2 1 32 32 H 1.08998 * 109.47204 * 305.92202 * 4 2 1 33 33 H 1.08996 * 109.46927 * 65.93068 * 4 2 1 34 34 H 0.97003 * 119.99979 * 0.02562 * 9 7 5 35 35 H 1.09003 * 109.47045 * 300.00308 * 10 9 7 36 36 H 1.08995 * 109.47173 * 60.00301 * 10 9 7 37 37 H 0.96991 * 120.00072 * 180.02562 * 14 13 11 38 38 H 1.07997 * 120.00243 * 0.02562 * 20 19 5 39 39 H 1.08001 * 119.99445 * 180.27732 * 21 20 19 40 40 H 1.07992 * 120.00093 * 179.83773 * 22 21 20 41 41 H 1.08002 * 120.00012 * 180.02562 * 23 22 21 42 42 H 1.08000 * 120.00031 * 359.97438 * 24 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5628 -0.8515 -1.1770 6 1 4.0049 0.1332 -1.0257 7 6 4.0782 -1.4411 -2.4645 8 8 4.6884 -2.4891 -2.4500 9 7 3.8609 -0.8039 -3.6320 10 6 4.3615 -1.3773 -4.8838 11 6 3.9889 -0.4767 -6.0333 12 1 3.4343 0.4317 -5.8498 13 6 4.3551 -0.8130 -7.3192 14 7 5.0300 -1.9195 -7.5427 15 14 3.8939 0.3036 -8.7439 16 1 4.9737 1.2993 -8.9622 17 1 3.7154 -0.5104 -9.9731 18 1 2.6259 1.0095 -8.4292 19 6 3.9359 -1.7517 -0.0274 20 6 3.3954 -3.0210 0.0602 21 6 3.7411 -3.8484 1.1123 22 6 4.6202 -3.4031 2.0818 23 6 5.1566 -2.1319 1.9970 24 6 4.8143 -1.3061 0.9425 25 1 -0.3633 0.5886 -0.8424 26 1 -0.3632 -1.0239 -0.0886 27 1 -0.3633 0.4351 0.9310 28 1 1.8934 -0.5138 0.8901 29 1 1.6767 1.9563 0.8900 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.5927 -1.7137 -1.3038 33 1 1.7660 -0.1498 -2.1360 34 1 3.3731 0.0345 -3.6435 35 1 5.4463 -1.4705 -4.8325 36 1 3.9190 -2.3618 -5.0349 37 1 5.2880 -2.1559 -8.4473 38 1 2.7061 -3.3677 -0.6955 39 1 3.3223 -4.8417 1.1783 40 1 4.8882 -4.0485 2.9051 41 1 5.8438 -1.7841 2.7541 42 1 5.2335 -0.3130 0.8762 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427650946.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:20 Heat of formation + Delta-G solvation = -61.831922 kcal Electronic energy + Delta-G solvation = -21269.336341 eV Core-core repulsion = 18212.181339 eV Total energy + Delta-G solvation = -3057.155002 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.36917 -39.53980 -37.54020 -36.14914 -34.35766 -33.56618 -31.75186 -30.24700 -28.83133 -27.95395 -25.86782 -24.59860 -23.41322 -22.59260 -21.26904 -20.45800 -18.92444 -17.84133 -17.53622 -17.00675 -16.66840 -16.25426 -15.75181 -15.71362 -15.41352 -14.90287 -14.65438 -14.37073 -14.17961 -14.03911 -13.91248 -13.51182 -13.38363 -13.01019 -12.92907 -12.89663 -12.71810 -12.46957 -12.23651 -11.94702 -11.88351 -11.77706 -11.49950 -11.41965 -11.39975 -10.80767 -10.63974 -9.83294 -9.72966 -9.55164 -8.29584 -6.46423 0.48911 0.57795 1.42738 1.45143 1.56399 1.75275 2.31887 2.56164 3.02713 3.05400 3.56662 3.75658 3.97074 4.08209 4.12714 4.22345 4.27146 4.30185 4.36389 4.53652 4.67115 4.76136 4.83185 4.85789 4.92633 5.03879 5.08658 5.12797 5.13595 5.20390 5.20989 5.23148 5.35720 5.48088 5.51851 5.56775 5.61620 5.66645 5.68963 5.77095 5.84289 6.17986 6.64552 6.90447 7.22981 7.48806 8.82724 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.019039 B = 0.004473 C = 0.003882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.295875 B = 6257.639458 C = 7210.895459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.086 4.086 3 C -0.150 4.150 4 C -0.100 4.100 5 C -0.057 4.057 6 H 0.123 0.877 7 C 0.499 3.501 8 O -0.594 6.594 9 N -0.705 5.705 10 C 0.268 3.732 11 C -0.555 4.555 12 H 0.084 0.916 13 C 0.004 3.996 14 N -0.932 5.932 15 Si 0.984 3.016 16 H -0.270 1.270 17 H -0.284 1.284 18 H -0.254 1.254 19 C -0.067 4.067 20 C -0.111 4.111 21 C -0.133 4.133 22 C -0.127 4.127 23 C -0.125 4.125 24 C -0.124 4.124 25 H 0.058 0.942 26 H 0.048 0.952 27 H 0.065 0.935 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.076 0.924 34 H 0.407 0.593 35 H -0.015 1.015 36 H -0.014 1.014 37 H 0.268 0.732 38 H 0.100 0.900 39 H 0.132 0.868 40 H 0.145 0.855 41 H 0.147 0.853 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.248 6.132 19.903 22.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.105 4.105 3 C -0.207 4.207 4 C -0.138 4.138 5 C -0.078 4.078 6 H 0.141 0.859 7 C 0.286 3.714 8 O -0.475 6.475 9 N -0.355 5.355 10 C 0.145 3.855 11 C -0.593 4.593 12 H 0.102 0.898 13 C -0.195 4.195 14 N -0.571 5.571 15 Si 0.807 3.193 16 H -0.196 1.196 17 H -0.210 1.210 18 H -0.178 1.178 19 C -0.067 4.067 20 C -0.129 4.129 21 C -0.151 4.151 22 C -0.145 4.145 23 C -0.143 4.143 24 C -0.142 4.142 25 H 0.077 0.923 26 H 0.067 0.933 27 H 0.084 0.916 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.095 0.905 34 H 0.243 0.757 35 H 0.003 0.997 36 H 0.004 0.996 37 H 0.077 0.923 38 H 0.118 0.882 39 H 0.150 0.850 40 H 0.163 0.837 41 H 0.165 0.835 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -6.747 5.293 19.749 21.530 hybrid contribution -0.014 0.093 -1.297 1.301 sum -6.761 5.386 18.452 20.376 Atomic orbital electron populations 1.21823 0.94394 1.01677 1.02381 1.21021 0.96185 0.96633 0.96616 1.21915 1.01223 0.95043 1.02507 1.21692 0.90590 1.01368 1.00136 1.20421 0.98854 0.99856 0.88683 0.85894 1.21309 0.79294 0.84495 0.86265 1.90649 1.43631 1.25364 1.87888 1.46190 1.56508 1.26235 1.06565 1.18522 0.92396 0.93300 0.81297 1.21610 1.37443 1.08490 0.91714 0.89782 1.26065 0.94302 0.96844 1.02317 1.70142 1.38870 1.25522 1.22519 0.85162 0.79292 0.77915 0.76892 1.19572 1.20999 1.17803 1.19386 0.97714 0.94684 0.94952 1.20973 1.00119 0.94177 0.97662 1.21346 0.99032 0.99972 0.94771 1.21439 0.97060 0.96676 0.99346 1.21420 1.00118 0.94227 0.98534 1.21275 0.97304 1.01017 0.94622 0.92303 0.93253 0.91592 0.91380 0.91632 0.92463 0.92162 0.92451 0.90547 0.75734 0.99706 0.99648 0.92273 0.88178 0.84966 0.83713 0.83493 0.84604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.44 9.19 71.98 0.66 -1.78 16 2 C -0.09 -1.62 2.82 -10.79 -0.03 -1.65 16 3 C -0.15 -2.39 8.97 71.98 0.65 -1.75 16 4 C -0.10 -2.43 3.94 30.60 0.12 -2.31 16 5 C -0.06 -1.65 2.26 -12.28 -0.03 -1.68 16 6 H 0.12 2.98 6.11 -2.39 -0.01 2.97 16 7 C 0.50 20.68 7.05 87.66 0.62 21.30 16 8 O -0.59 -30.52 15.39 -3.02 -0.05 -30.56 16 9 N -0.71 -30.45 5.41 -466.79 -2.52 -32.97 16 10 C 0.27 14.96 5.43 85.63 0.46 15.42 16 11 C -0.55 -30.39 9.28 25.60 0.24 -30.15 16 12 H 0.08 4.14 7.60 -2.91 -0.02 4.12 16 13 C 0.00 0.24 5.46 84.65 0.46 0.70 16 14 N -0.93 -56.77 13.29 21.45 0.28 -56.49 16 15 Si 0.98 42.42 29.54 68.60 2.03 44.44 16 16 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 17 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 18 H -0.25 -10.15 7.11 99.48 0.71 -9.44 16 19 C -0.07 -1.95 3.23 -19.86 -0.06 -2.02 16 20 C -0.11 -3.40 8.18 22.27 0.18 -3.22 16 21 C -0.13 -3.45 10.05 22.27 0.22 -3.23 16 22 C -0.13 -2.80 10.05 22.27 0.22 -2.58 16 23 C -0.13 -2.71 10.05 22.27 0.22 -2.48 16 24 C -0.12 -3.08 9.67 22.27 0.22 -2.86 16 25 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.07 1.38 7.22 -2.39 -0.02 1.36 16 29 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 30 H 0.06 0.91 6.49 -2.39 -0.02 0.89 16 31 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 32 H 0.06 1.54 6.90 -2.39 -0.02 1.52 16 33 H 0.08 1.80 7.42 -2.39 -0.02 1.79 16 34 H 0.41 14.55 7.68 -92.71 -0.71 13.84 16 35 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 36 H -0.01 -0.91 8.14 -2.39 -0.02 -0.93 16 37 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 38 H 0.10 3.30 7.21 -2.91 -0.02 3.28 16 39 H 0.13 2.88 8.06 -2.91 -0.02 2.85 16 40 H 0.15 2.29 8.06 -2.91 -0.02 2.26 16 41 H 0.15 2.26 8.06 -2.91 -0.02 2.23 16 42 H 0.14 2.76 7.95 -2.91 -0.02 2.73 16 Total: -1.00 -72.57 344.60 4.18 -68.39 By element: Atomic # 1 Polarization: 25.20 SS G_CDS: 0.28 Total: 25.48 kcal Atomic # 6 Polarization: -22.45 SS G_CDS: 4.16 Total: -18.29 kcal Atomic # 7 Polarization: -87.22 SS G_CDS: -2.24 Total: -89.46 kcal Atomic # 8 Polarization: -30.52 SS G_CDS: -0.05 Total: -30.56 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.44 kcal Total: -72.57 4.18 -68.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427650946.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.558 kcal (2) G-P(sol) polarization free energy of solvation -72.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds