Wall clock time and date at job start Mon Mar 30 2020 02:47:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46869 * 2 1 4 4 C 1.53000 * 109.47243 * 239.99838 * 2 1 3 5 5 C 1.52999 * 109.46906 * 294.45560 * 4 2 1 6 6 H 1.08995 * 109.46996 * 54.11956 * 5 4 2 7 7 C 1.50707 * 109.46478 * 174.11367 * 5 4 2 8 8 O 1.21280 * 119.99396 * 113.23446 * 7 5 4 9 9 N 1.34775 * 120.00308 * 293.22421 * 7 5 4 10 10 C 1.46492 * 120.00210 * 184.82736 * 9 7 5 11 11 C 1.50698 * 109.47593 * 180.02562 * 10 9 7 12 12 H 1.08005 * 119.99502 * 0.02562 * 11 10 9 13 13 C 1.37871 * 120.00563 * 179.97438 * 11 10 9 14 14 N 1.31514 * 119.99831 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00167 * 180.02562 * 13 11 10 16 16 H 1.48494 * 109.47370 * 90.00048 * 15 13 11 17 17 H 1.48504 * 109.47204 * 210.00493 * 15 13 11 18 18 H 1.48504 * 109.47246 * 330.00095 * 15 13 11 19 19 C 1.50694 * 109.47408 * 294.11427 * 5 4 2 20 20 C 1.38237 * 119.99953 * 299.72802 * 19 5 4 21 21 C 1.38239 * 119.99924 * 179.80933 * 20 19 5 22 22 C 1.38234 * 119.99539 * 0.39866 * 21 20 19 23 23 C 1.38226 * 120.00390 * 359.85475 * 22 21 20 24 24 C 1.38232 * 119.99997 * 120.00354 * 19 5 4 25 25 H 1.08998 * 109.47060 * 296.31889 * 1 2 3 26 26 H 1.09001 * 109.46953 * 56.31610 * 1 2 3 27 27 H 1.09001 * 109.46980 * 176.31407 * 1 2 3 28 28 H 1.09003 * 109.47264 * 119.99784 * 2 1 3 29 29 H 1.08999 * 109.47350 * 60.00320 * 3 2 1 30 30 H 1.09001 * 109.46934 * 180.02562 * 3 2 1 31 31 H 1.08996 * 109.46980 * 299.99576 * 3 2 1 32 32 H 1.08999 * 109.47199 * 54.46131 * 4 2 1 33 33 H 1.09006 * 109.46796 * 174.45744 * 4 2 1 34 34 H 0.96998 * 119.99749 * 4.83116 * 9 7 5 35 35 H 1.09001 * 109.47411 * 300.00658 * 10 9 7 36 36 H 1.09007 * 109.47302 * 60.00221 * 10 9 7 37 37 H 0.97001 * 119.99738 * 179.97438 * 14 13 11 38 38 H 1.08002 * 119.99999 * 0.02562 * 20 19 5 39 39 H 1.08001 * 120.00054 * 180.23315 * 21 20 19 40 40 H 1.08001 * 119.99550 * 179.83668 * 22 21 20 41 41 H 1.08004 * 120.00318 * 179.97438 * 23 22 21 42 42 H 1.08003 * 120.00071 * 359.97438 * 24 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6470 -2.1984 -1.1814 6 1 0.5715 -2.2813 -1.0254 7 6 2.0211 -2.8774 -2.4738 8 8 2.8903 -3.7232 -2.4848 9 7 1.3896 -2.5450 -3.6171 10 6 1.6775 -3.2776 -4.8526 11 6 0.8468 -2.7136 -5.9763 12 1 0.1721 -1.8913 -5.7889 13 6 0.9487 -3.2465 -7.2438 14 7 1.7706 -4.2475 -7.4720 15 14 -0.0805 -2.5469 -8.6368 16 1 0.6694 -1.4535 -9.3055 17 1 -0.3755 -3.6190 -9.6212 18 1 -1.3539 -2.0120 -8.0911 19 6 2.3729 -2.8594 -0.0381 20 6 3.7549 -2.8852 -0.0195 21 6 4.4209 -3.4882 1.0312 22 6 3.7046 -4.0725 2.0591 23 6 2.3227 -4.0512 2.0378 24 6 1.6568 -3.4450 0.9890 25 1 -0.3633 0.4556 0.9211 26 1 -0.3633 0.5700 -0.8551 27 1 -0.3633 -1.0256 -0.0661 28 1 1.8934 -0.5138 0.8900 29 1 1.6767 1.9564 0.8900 30 1 3.1300 1.4426 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.5980 -0.2680 -2.1364 33 1 3.1256 -0.6361 -1.3002 34 1 0.7445 -1.8207 -3.6218 35 1 2.7350 -3.1767 -5.0969 36 1 1.4354 -4.3315 -4.7149 37 1 1.8421 -4.6227 -8.3637 38 1 4.3144 -2.4313 -0.8241 39 1 5.5006 -3.5050 1.0477 40 1 4.2249 -4.5458 2.8786 41 1 1.7631 -4.5081 2.8407 42 1 0.5770 -3.4283 0.9724 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427650947.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:25 Heat of formation + Delta-G solvation = -43.043514 kcal Electronic energy + Delta-G solvation = -21259.286893 eV Core-core repulsion = 18202.946617 eV Total energy + Delta-G solvation = -3056.340275 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.05719 -38.15716 -36.54675 -34.18714 -32.59229 -32.22504 -30.73021 -28.94041 -27.24327 -27.04693 -24.59240 -22.80416 -22.38185 -21.29581 -19.94727 -19.25382 -17.17270 -16.68678 -15.77782 -15.55921 -15.33104 -14.80065 -14.55054 -14.25214 -14.17207 -13.68573 -13.55414 -13.19885 -12.96655 -12.56300 -12.37012 -12.23697 -12.08621 -11.88980 -11.80126 -11.53289 -11.01458 -11.00948 -10.93518 -10.91287 -10.79566 -10.51467 -10.45367 -10.29842 -9.39290 -9.02288 -8.73148 -8.66366 -8.48390 -7.85551 -6.16396 -4.23320 1.52292 1.61532 3.24029 3.30214 3.32528 3.37227 3.87963 4.20619 4.39474 4.66787 4.85043 4.89209 4.99938 5.05987 5.14087 5.19766 5.26449 5.35111 5.46690 5.56189 5.59425 5.66506 5.72157 5.74291 5.80966 5.85058 5.92261 6.00271 6.15036 6.16299 6.23275 6.31402 6.38071 6.61354 6.68655 6.84527 7.17569 7.32240 7.45773 7.52707 7.67326 7.97677 8.64324 8.78852 9.12074 9.43512 10.93828 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.018911 B = 0.004460 C = 0.003869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.242514 B = 6276.696182 C = 7235.680211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.095 4.095 3 C -0.146 4.146 4 C -0.102 4.102 5 C -0.074 4.074 6 H 0.100 0.900 7 C 0.503 3.497 8 O -0.547 6.547 9 N -0.712 5.712 10 C 0.250 3.750 11 C -0.542 4.542 12 H 0.063 0.937 13 C 0.064 3.936 14 N -0.886 5.886 15 Si 0.903 3.097 16 H -0.279 1.279 17 H -0.284 1.284 18 H -0.273 1.273 19 C -0.053 4.053 20 C -0.079 4.079 21 C -0.125 4.125 22 C -0.126 4.126 23 C -0.127 4.127 24 C -0.115 4.115 25 H 0.051 0.949 26 H 0.056 0.944 27 H 0.057 0.943 28 H 0.073 0.927 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.390 0.610 35 H 0.027 0.973 36 H 0.025 0.975 37 H 0.266 0.734 38 H 0.120 0.880 39 H 0.118 0.882 40 H 0.116 0.884 41 H 0.117 0.883 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.705 7.865 18.336 19.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.113 4.113 3 C -0.204 4.204 4 C -0.140 4.140 5 C -0.096 4.096 6 H 0.118 0.882 7 C 0.287 3.713 8 O -0.425 6.425 9 N -0.360 5.360 10 C 0.129 3.871 11 C -0.581 4.581 12 H 0.081 0.919 13 C -0.140 4.140 14 N -0.523 5.523 15 Si 0.730 3.270 16 H -0.205 1.205 17 H -0.210 1.210 18 H -0.197 1.197 19 C -0.054 4.054 20 C -0.097 4.097 21 C -0.143 4.143 22 C -0.144 4.144 23 C -0.145 4.145 24 C -0.133 4.133 25 H 0.070 0.930 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.091 0.909 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.092 0.908 33 H 0.088 0.912 34 H 0.222 0.778 35 H 0.045 0.955 36 H 0.043 0.957 37 H 0.075 0.925 38 H 0.138 0.862 39 H 0.136 0.864 40 H 0.134 0.866 41 H 0.135 0.865 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -0.027 7.102 18.131 19.472 hybrid contribution -0.848 0.505 -0.927 1.354 sum -0.875 7.607 17.204 18.831 Atomic orbital electron populations 1.21917 0.95289 1.01938 1.01619 1.21108 0.95859 0.95959 0.98402 1.21828 1.00963 0.95988 1.01594 1.21653 1.01824 0.91964 0.98568 1.20482 1.01210 0.95692 0.92189 0.88238 1.20271 0.82541 0.83456 0.85054 1.90673 1.31590 1.33801 1.86470 1.46434 1.42825 1.36776 1.09957 1.19091 0.96989 0.91992 0.78981 1.21223 1.24822 1.18436 0.93601 0.91930 1.24947 0.95473 0.94800 0.98764 1.69978 1.36148 1.23929 1.22249 0.86427 0.80338 0.78671 0.81546 1.20462 1.21010 1.19740 1.19328 0.93740 0.97964 0.94326 1.20954 0.93865 0.97949 0.96914 1.21096 0.99680 0.98956 0.94557 1.21056 0.94286 1.00272 0.98821 1.20998 0.94514 1.00397 0.98623 1.20982 0.99453 0.98533 0.94360 0.92951 0.92487 0.92400 0.90875 0.92907 0.92772 0.92600 0.90829 0.91180 0.77775 0.95542 0.95686 0.92465 0.86189 0.86433 0.86634 0.86509 0.86457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.05 37.16 0.34 -1.06 16 2 C -0.09 -0.97 2.82 -90.62 -0.26 -1.22 16 3 C -0.15 -1.34 9.19 37.16 0.34 -1.00 16 4 C -0.10 -1.26 4.03 -26.73 -0.11 -1.37 16 5 C -0.07 -1.08 2.25 -92.92 -0.21 -1.29 16 6 H 0.10 1.29 6.00 -51.93 -0.31 0.98 16 7 C 0.50 10.03 6.98 -10.98 -0.08 9.95 16 8 O -0.55 -13.17 14.86 5.56 0.08 -13.09 16 9 N -0.71 -14.94 5.48 -61.47 -0.34 -15.27 16 10 C 0.25 6.65 5.43 -5.20 -0.03 6.62 16 11 C -0.54 -14.70 9.28 -34.44 -0.32 -15.02 16 12 H 0.06 1.58 7.60 -52.48 -0.40 1.18 16 13 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 14 N -0.89 -26.18 13.29 55.43 0.74 -25.45 16 15 Si 0.90 20.84 29.54 -169.99 -5.02 15.81 16 16 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 17 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 18 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 19 C -0.05 -0.78 3.41 -104.63 -0.36 -1.14 16 20 C -0.08 -1.20 7.79 -39.58 -0.31 -1.50 16 21 C -0.12 -1.66 10.05 -39.58 -0.40 -2.06 16 22 C -0.13 -1.53 10.05 -39.59 -0.40 -1.92 16 23 C -0.13 -1.53 10.05 -39.59 -0.40 -1.93 16 24 C -0.12 -1.51 9.67 -39.58 -0.38 -1.89 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.54 6.31 -51.93 -0.33 0.21 16 28 H 0.07 0.79 7.25 -51.93 -0.38 0.42 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.90 7.76 -51.93 -0.40 0.49 16 33 H 0.07 0.91 7.22 -51.93 -0.37 0.53 16 34 H 0.39 7.02 8.00 -40.82 -0.33 6.70 16 35 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.03 0.74 8.14 -51.92 -0.42 0.32 16 37 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 38 H 0.12 1.91 7.32 -52.49 -0.38 1.52 16 39 H 0.12 1.33 8.06 -52.49 -0.42 0.90 16 40 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 41 H 0.12 1.11 8.06 -52.48 -0.42 0.69 16 42 H 0.12 1.31 7.95 -52.48 -0.42 0.90 16 LS Contribution 344.85 15.07 5.20 5.20 Total: -1.00 -31.88 344.85 -8.68 -40.56 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -6.68 Total: 5.40 kcal Atomic # 6 Polarization: -10.51 SS G_CDS: -2.66 Total: -13.17 kcal Atomic # 7 Polarization: -41.12 SS G_CDS: 0.40 Total: -40.72 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: 0.08 Total: -13.09 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.88 -8.68 -40.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427650947.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.484 kcal (2) G-P(sol) polarization free energy of solvation -31.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds