Wall clock time and date at job start Mon Mar 30 2020 02:47:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46869 * 2 1 4 4 C 1.53000 * 109.47243 * 239.99838 * 2 1 3 5 5 C 1.52999 * 109.46906 * 294.45560 * 4 2 1 6 6 H 1.08995 * 109.46996 * 54.11956 * 5 4 2 7 7 C 1.50707 * 109.46478 * 174.11367 * 5 4 2 8 8 O 1.21280 * 119.99396 * 113.23446 * 7 5 4 9 9 N 1.34775 * 120.00308 * 293.22421 * 7 5 4 10 10 C 1.46492 * 120.00210 * 184.82736 * 9 7 5 11 11 C 1.50698 * 109.47593 * 180.02562 * 10 9 7 12 12 H 1.08005 * 119.99502 * 0.02562 * 11 10 9 13 13 C 1.37871 * 120.00563 * 179.97438 * 11 10 9 14 14 N 1.31514 * 119.99831 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00167 * 180.02562 * 13 11 10 16 16 H 1.48494 * 109.47370 * 90.00048 * 15 13 11 17 17 H 1.48504 * 109.47204 * 210.00493 * 15 13 11 18 18 H 1.48504 * 109.47246 * 330.00095 * 15 13 11 19 19 C 1.50694 * 109.47408 * 294.11427 * 5 4 2 20 20 C 1.38237 * 119.99953 * 299.72802 * 19 5 4 21 21 C 1.38239 * 119.99924 * 179.80933 * 20 19 5 22 22 C 1.38234 * 119.99539 * 0.39866 * 21 20 19 23 23 C 1.38226 * 120.00390 * 359.85475 * 22 21 20 24 24 C 1.38232 * 119.99997 * 120.00354 * 19 5 4 25 25 H 1.08998 * 109.47060 * 296.31889 * 1 2 3 26 26 H 1.09001 * 109.46953 * 56.31610 * 1 2 3 27 27 H 1.09001 * 109.46980 * 176.31407 * 1 2 3 28 28 H 1.09003 * 109.47264 * 119.99784 * 2 1 3 29 29 H 1.08999 * 109.47350 * 60.00320 * 3 2 1 30 30 H 1.09001 * 109.46934 * 180.02562 * 3 2 1 31 31 H 1.08996 * 109.46980 * 299.99576 * 3 2 1 32 32 H 1.08999 * 109.47199 * 54.46131 * 4 2 1 33 33 H 1.09006 * 109.46796 * 174.45744 * 4 2 1 34 34 H 0.96998 * 119.99749 * 4.83116 * 9 7 5 35 35 H 1.09001 * 109.47411 * 300.00658 * 10 9 7 36 36 H 1.09007 * 109.47302 * 60.00221 * 10 9 7 37 37 H 0.97001 * 119.99738 * 179.97438 * 14 13 11 38 38 H 1.08002 * 119.99999 * 0.02562 * 20 19 5 39 39 H 1.08001 * 120.00054 * 180.23315 * 21 20 19 40 40 H 1.08001 * 119.99550 * 179.83668 * 22 21 20 41 41 H 1.08004 * 120.00318 * 179.97438 * 23 22 21 42 42 H 1.08003 * 120.00071 * 359.97438 * 24 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6470 -2.1984 -1.1814 6 1 0.5715 -2.2813 -1.0254 7 6 2.0211 -2.8774 -2.4738 8 8 2.8903 -3.7232 -2.4848 9 7 1.3896 -2.5450 -3.6171 10 6 1.6775 -3.2776 -4.8526 11 6 0.8468 -2.7136 -5.9763 12 1 0.1721 -1.8913 -5.7889 13 6 0.9487 -3.2465 -7.2438 14 7 1.7706 -4.2475 -7.4720 15 14 -0.0805 -2.5469 -8.6368 16 1 0.6694 -1.4535 -9.3055 17 1 -0.3755 -3.6190 -9.6212 18 1 -1.3539 -2.0120 -8.0911 19 6 2.3729 -2.8594 -0.0381 20 6 3.7549 -2.8852 -0.0195 21 6 4.4209 -3.4882 1.0312 22 6 3.7046 -4.0725 2.0591 23 6 2.3227 -4.0512 2.0378 24 6 1.6568 -3.4450 0.9890 25 1 -0.3633 0.4556 0.9211 26 1 -0.3633 0.5700 -0.8551 27 1 -0.3633 -1.0256 -0.0661 28 1 1.8934 -0.5138 0.8900 29 1 1.6767 1.9564 0.8900 30 1 3.1300 1.4426 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.5980 -0.2680 -2.1364 33 1 3.1256 -0.6361 -1.3002 34 1 0.7445 -1.8207 -3.6218 35 1 2.7350 -3.1767 -5.0969 36 1 1.4354 -4.3315 -4.7149 37 1 1.8421 -4.6227 -8.3637 38 1 4.3144 -2.4313 -0.8241 39 1 5.5006 -3.5050 1.0477 40 1 4.2249 -4.5458 2.8786 41 1 1.7631 -4.5081 2.8407 42 1 0.5770 -3.4283 0.9724 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427650947.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:24 Heat of formation + Delta-G solvation = -61.824859 kcal Electronic energy + Delta-G solvation = -21260.101313 eV Core-core repulsion = 18202.946617 eV Total energy + Delta-G solvation = -3057.154696 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.37596 -39.52516 -37.53991 -36.15241 -34.35625 -33.55750 -31.73764 -30.24396 -28.85417 -27.95531 -25.85734 -24.58014 -23.42811 -22.58400 -21.26696 -20.46842 -18.91979 -17.81085 -17.54027 -17.01012 -16.62981 -16.26829 -15.78205 -15.70188 -15.40957 -14.91020 -14.64958 -14.35295 -14.19348 -14.05191 -13.86704 -13.51237 -13.38727 -13.02056 -12.92721 -12.88384 -12.72308 -12.49283 -12.23402 -11.96163 -11.87957 -11.75264 -11.49946 -11.42769 -11.39768 -10.80831 -10.62799 -9.83272 -9.71350 -9.54756 -8.29660 -6.46475 0.48840 0.58878 1.42719 1.45135 1.56396 1.74938 2.31754 2.56021 3.02185 3.05355 3.57394 3.76861 3.97871 4.08453 4.13034 4.22761 4.27228 4.30480 4.36682 4.55082 4.68078 4.76387 4.82756 4.85539 4.92760 5.03095 5.08579 5.13002 5.13471 5.20893 5.21972 5.23163 5.35646 5.48162 5.52044 5.57089 5.61872 5.67226 5.69258 5.78784 5.84301 6.18432 6.64495 6.90549 7.22922 7.48549 8.82629 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.018911 B = 0.004460 C = 0.003869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.242514 B = 6276.696182 C = 7235.680211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.086 4.086 3 C -0.145 4.145 4 C -0.098 4.098 5 C -0.057 4.057 6 H 0.123 0.877 7 C 0.499 3.501 8 O -0.592 6.592 9 N -0.706 5.706 10 C 0.268 3.732 11 C -0.555 4.555 12 H 0.084 0.916 13 C 0.004 3.996 14 N -0.932 5.932 15 Si 0.985 3.015 16 H -0.271 1.271 17 H -0.284 1.284 18 H -0.254 1.254 19 C -0.072 4.072 20 C -0.104 4.104 21 C -0.137 4.137 22 C -0.126 4.126 23 C -0.127 4.127 24 C -0.122 4.122 25 H 0.065 0.935 26 H 0.059 0.941 27 H 0.057 0.943 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.048 0.952 31 H 0.057 0.943 32 H 0.075 0.925 33 H 0.056 0.944 34 H 0.407 0.593 35 H -0.015 1.015 36 H -0.014 1.014 37 H 0.268 0.732 38 H 0.097 0.903 39 H 0.131 0.869 40 H 0.145 0.855 41 H 0.148 0.852 42 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.832 9.284 19.866 22.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.105 4.105 3 C -0.203 4.203 4 C -0.136 4.136 5 C -0.078 4.078 6 H 0.141 0.859 7 C 0.286 3.714 8 O -0.474 6.474 9 N -0.356 5.356 10 C 0.145 3.855 11 C -0.593 4.593 12 H 0.102 0.898 13 C -0.195 4.195 14 N -0.571 5.571 15 Si 0.807 3.193 16 H -0.196 1.196 17 H -0.210 1.210 18 H -0.178 1.178 19 C -0.073 4.073 20 C -0.123 4.123 21 C -0.155 4.155 22 C -0.144 4.144 23 C -0.144 4.144 24 C -0.139 4.139 25 H 0.084 0.916 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.067 0.933 31 H 0.076 0.924 32 H 0.094 0.906 33 H 0.074 0.926 34 H 0.243 0.757 35 H 0.003 0.997 36 H 0.004 0.996 37 H 0.077 0.923 38 H 0.115 0.885 39 H 0.148 0.852 40 H 0.163 0.837 41 H 0.166 0.834 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -2.175 8.561 19.700 21.589 hybrid contribution -0.097 0.002 -1.316 1.319 sum -2.272 8.564 18.384 20.407 Atomic orbital electron populations 1.21923 0.94119 1.02159 1.02521 1.21023 0.96717 0.96105 0.96610 1.21821 1.00712 0.95347 1.02394 1.21658 1.01136 0.90686 1.00153 1.20419 1.02425 0.96288 0.88679 0.85939 1.21303 0.81138 0.82629 0.86312 1.90646 1.33494 1.35905 1.87314 1.46172 1.43586 1.36984 1.08815 1.18519 0.94657 0.90689 0.81640 1.21609 1.24959 1.18912 0.93778 0.89786 1.26066 0.96618 0.94884 1.01972 1.70145 1.38092 1.25670 1.23146 0.85161 0.78915 0.77799 0.77379 1.19619 1.20976 1.17777 1.19407 0.93646 0.99178 0.95029 1.20958 0.94484 0.99466 0.97354 1.21343 1.00658 0.98904 0.94544 1.21438 0.94700 0.99328 0.98902 1.21418 0.94750 0.99396 0.98875 1.21279 1.00599 0.97975 0.94097 0.91592 0.92178 0.92410 0.91330 0.91498 0.93276 0.92385 0.90612 0.92570 0.75736 0.99709 0.99647 0.92277 0.88485 0.85151 0.83731 0.83406 0.84382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.38 9.05 71.98 0.65 -1.73 16 2 C -0.09 -1.61 2.82 -10.79 -0.03 -1.64 16 3 C -0.15 -2.42 9.19 71.98 0.66 -1.76 16 4 C -0.10 -2.40 4.03 30.59 0.12 -2.27 16 5 C -0.06 -1.65 2.25 -12.29 -0.03 -1.68 16 6 H 0.12 2.97 6.00 -2.39 -0.01 2.95 16 7 C 0.50 20.64 6.98 87.66 0.61 21.25 16 8 O -0.59 -30.24 14.86 -3.03 -0.04 -30.28 16 9 N -0.71 -30.46 5.48 -466.79 -2.56 -33.02 16 10 C 0.27 14.96 5.43 85.63 0.47 15.42 16 11 C -0.55 -30.39 9.28 25.60 0.24 -30.16 16 12 H 0.08 4.14 7.60 -2.91 -0.02 4.12 16 13 C 0.00 0.23 5.46 84.65 0.46 0.69 16 14 N -0.93 -56.77 13.29 21.45 0.28 -56.49 16 15 Si 0.98 42.42 29.54 68.60 2.03 44.45 16 16 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 17 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 18 H -0.25 -10.13 7.11 99.48 0.71 -9.42 16 19 C -0.07 -2.11 3.41 -19.87 -0.07 -2.17 16 20 C -0.10 -3.28 7.79 22.27 0.17 -3.10 16 21 C -0.14 -3.60 10.05 22.27 0.22 -3.38 16 22 C -0.13 -2.77 10.05 22.27 0.22 -2.55 16 23 C -0.13 -2.70 10.05 22.27 0.22 -2.47 16 24 C -0.12 -2.95 9.67 22.27 0.22 -2.74 16 25 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.06 0.91 6.31 -2.39 -0.02 0.90 16 28 H 0.07 1.38 7.25 -2.39 -0.02 1.36 16 29 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.08 1.79 7.76 -2.39 -0.02 1.77 16 33 H 0.06 1.52 7.22 -2.38 -0.02 1.50 16 34 H 0.41 14.55 8.00 -92.71 -0.74 13.80 16 35 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 36 H -0.01 -0.91 8.14 -2.38 -0.02 -0.93 16 37 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 38 H 0.10 3.37 7.32 -2.91 -0.02 3.35 16 39 H 0.13 2.94 8.06 -2.91 -0.02 2.91 16 40 H 0.14 2.29 8.06 -2.91 -0.02 2.27 16 41 H 0.15 2.20 8.06 -2.91 -0.02 2.18 16 42 H 0.14 2.69 7.95 -2.91 -0.02 2.66 16 Total: -1.00 -72.37 344.85 4.11 -68.26 By element: Atomic # 1 Polarization: 25.12 SS G_CDS: 0.25 Total: 25.37 kcal Atomic # 6 Polarization: -22.43 SS G_CDS: 4.15 Total: -18.29 kcal Atomic # 7 Polarization: -87.24 SS G_CDS: -2.28 Total: -89.51 kcal Atomic # 8 Polarization: -30.24 SS G_CDS: -0.04 Total: -30.28 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.45 kcal Total: -72.37 4.11 -68.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427650947.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.439 kcal (2) G-P(sol) polarization free energy of solvation -72.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds