Wall clock time and date at job start Mon Mar 30 2020 01:27:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35899 * 116.99832 * 2 1 4 4 C 1.38756 * 120.05452 * 359.97438 * 3 2 1 5 5 C 1.38121 * 119.94179 * 180.02562 * 4 3 2 6 6 C 1.50700 * 119.97333 * 179.97438 * 5 4 3 7 7 N 1.46910 * 109.47012 * 90.00238 * 6 5 4 8 8 C 1.46895 * 110.99971 * 180.02562 * 7 6 5 9 9 C 1.53003 * 109.47038 * 174.87619 * 8 7 6 10 10 C 1.50696 * 115.54453 * 296.30160 * 9 8 7 11 11 H 1.08001 * 120.00294 * 95.20676 * 10 9 8 12 12 C 1.37877 * 119.99957 * 274.92366 * 10 9 8 13 13 N 1.31514 * 119.99940 * 355.42608 * 12 10 9 14 14 Si 1.86797 * 119.99963 * 175.42038 * 12 10 9 15 15 H 1.48502 * 109.47311 * 0.02562 * 14 12 10 16 16 H 1.48498 * 109.47232 * 120.00635 * 14 12 10 17 17 H 1.48500 * 109.47387 * 240.00519 * 14 12 10 18 18 C 1.52992 * 117.50019 * 81.97289 * 9 8 7 19 19 C 1.52997 * 117.49882 * 150.63170 * 9 8 7 20 20 C 1.38292 * 120.05629 * 0.27223 * 5 4 3 21 21 C 1.38242 * 120.11073 * 359.45475 * 20 5 4 22 22 C 1.38169 * 120.05628 * 0.54376 * 21 20 5 23 23 C 1.50701 * 120.02988 * 179.70673 * 22 21 20 24 24 H 1.09000 * 109.46709 * 60.00286 * 1 2 3 25 25 H 1.09000 * 109.47022 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47461 * 300.00191 * 1 2 3 27 27 H 1.07994 * 120.02749 * 0.04675 * 4 3 2 28 28 H 1.08991 * 109.46912 * 330.00530 * 6 5 4 29 29 H 1.09002 * 109.47554 * 209.99758 * 6 5 4 30 30 H 1.00901 * 110.99734 * 56.04265 * 7 6 5 31 31 H 1.08996 * 109.47777 * 54.86957 * 8 7 6 32 32 H 1.09010 * 109.46633 * 294.86997 * 8 7 6 33 33 H 0.97010 * 119.99605 * 179.97438 * 13 12 10 34 34 H 1.08998 * 117.49867 * 215.00457 * 18 9 8 35 35 H 1.09002 * 117.49985 * 0.02562 * 18 9 8 36 36 H 1.09005 * 117.50012 * 359.97438 * 19 9 8 37 37 H 1.09000 * 117.49705 * 144.96683 * 19 9 8 38 38 H 1.08000 * 119.94281 * 179.70396 * 20 5 4 39 39 H 1.08002 * 119.97181 * 180.25147 * 21 20 5 40 40 H 1.09001 * 109.47064 * 270.02381 * 23 22 21 41 41 H 1.09003 * 109.46887 * 30.02015 * 23 22 21 42 42 H 1.08993 * 109.46902 * 150.02193 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3753 -0.0005 5 6 1.9207 3.6047 -0.0011 6 6 1.1018 4.8698 -0.0022 7 7 0.8352 5.2818 1.3825 8 6 0.0367 6.5142 1.4205 9 6 -0.3281 6.8409 2.8701 10 6 -1.2070 5.8313 3.5623 11 1 -0.7642 5.0594 4.1744 12 6 -2.5767 5.8964 3.4191 13 7 -3.1217 6.8909 2.7531 14 14 -3.6584 4.5719 4.1707 15 1 -2.8071 3.5717 4.8637 16 1 -4.5907 5.1896 5.1477 17 1 -4.4374 3.9016 3.0988 18 6 0.7216 7.5626 3.7173 19 6 -0.5216 8.3141 3.2350 20 6 3.3018 3.6758 -0.0068 21 6 4.0559 2.5172 -0.0005 22 6 3.4311 1.2848 0.0000 23 6 4.2537 0.0222 0.0001 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 0.2127 2.3203 -0.0002 28 1 0.1575 4.6908 -0.5162 29 1 1.6517 5.6582 -0.5163 30 1 1.6950 5.3915 1.8990 31 1 -0.8746 6.3749 0.8390 32 1 0.6157 7.3354 0.9977 33 1 -4.0854 6.9365 2.6520 34 1 0.7766 7.3071 4.7755 35 1 1.6721 7.8051 3.2420 36 1 -0.3885 9.0506 2.4425 37 1 -1.2849 8.5531 3.9756 38 1 3.7921 4.6381 -0.0120 39 1 5.1343 2.5753 -0.0009 40 1 4.4521 -0.2823 -1.0275 41 1 5.1978 0.2036 0.5139 42 1 3.7064 -0.7680 0.5140 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430037756.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:41 Heat of formation + Delta-G solvation = 5.412983 kcal Electronic energy + Delta-G solvation = -20981.629065 eV Core-core repulsion = 17927.390021 eV Total energy + Delta-G solvation = -3054.239044 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.17320 -37.72252 -36.86768 -34.74504 -32.32644 -31.76321 -30.04198 -28.08735 -27.45281 -25.63755 -24.58701 -22.76064 -22.11100 -21.01973 -20.69410 -18.99433 -17.38602 -16.49876 -15.93282 -15.71294 -15.42514 -14.87158 -14.42729 -14.11647 -13.96946 -13.91483 -13.45061 -13.37039 -13.17661 -12.51832 -12.34014 -12.05305 -11.94680 -11.63023 -11.47810 -11.24087 -11.15255 -10.91148 -10.88730 -10.64971 -10.61322 -10.39666 -10.11332 -9.34700 -8.88719 -8.59975 -8.31058 -8.06213 -7.94206 -7.53694 -5.92499 -3.94234 1.43529 1.57240 3.33426 3.34197 3.41572 3.47324 3.82525 4.49610 4.78797 4.89199 5.00977 5.11026 5.21239 5.25108 5.30338 5.33416 5.37501 5.51069 5.55297 5.63965 5.68288 5.72879 5.78327 5.91919 6.00100 6.20008 6.26845 6.34068 6.45456 6.51473 6.55985 6.61761 6.78125 6.81163 6.88631 6.92691 7.18312 7.47044 7.53919 7.58043 7.93792 8.00299 8.15200 8.59034 9.05192 9.68590 11.16759 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.017053 B = 0.004862 C = 0.004059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.553532 B = 5757.765788 C = 6897.299539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.319 6.319 3 C 0.122 3.878 4 C -0.178 4.178 5 C -0.035 4.035 6 C 0.095 3.905 7 N -0.662 5.662 8 C 0.108 3.892 9 C 0.048 3.952 10 C -0.464 4.464 11 H 0.059 0.941 12 C 0.066 3.934 13 N -0.887 5.887 14 Si 0.887 3.113 15 H -0.273 1.273 16 H -0.287 1.287 17 H -0.286 1.286 18 C -0.217 4.217 19 C -0.152 4.152 20 C -0.150 4.150 21 C -0.086 4.086 22 C -0.127 4.127 23 C -0.101 4.101 24 H 0.054 0.946 25 H 0.096 0.904 26 H 0.060 0.940 27 H 0.131 0.869 28 H 0.076 0.924 29 H 0.029 0.971 30 H 0.333 0.667 31 H 0.072 0.928 32 H -0.004 1.004 33 H 0.256 0.744 34 H 0.076 0.924 35 H 0.059 0.941 36 H 0.058 0.942 37 H 0.084 0.916 38 H 0.119 0.881 39 H 0.124 0.876 40 H 0.063 0.937 41 H 0.061 0.939 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.024 -9.509 -7.837 16.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.232 6.232 3 C 0.078 3.922 4 C -0.198 4.198 5 C -0.036 4.036 6 C -0.034 4.034 7 N -0.292 5.292 8 C -0.021 4.021 9 C 0.047 3.953 10 C -0.502 4.502 11 H 0.077 0.923 12 C -0.136 4.136 13 N -0.526 5.526 14 Si 0.716 3.284 15 H -0.198 1.198 16 H -0.214 1.214 17 H -0.212 1.212 18 C -0.254 4.254 19 C -0.190 4.190 20 C -0.169 4.169 21 C -0.104 4.104 22 C -0.127 4.127 23 C -0.158 4.158 24 H 0.073 0.927 25 H 0.115 0.885 26 H 0.079 0.921 27 H 0.149 0.851 28 H 0.094 0.906 29 H 0.047 0.953 30 H 0.150 0.850 31 H 0.090 0.910 32 H 0.014 0.986 33 H 0.066 0.934 34 H 0.094 0.906 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.103 0.897 38 H 0.137 0.863 39 H 0.142 0.858 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 10.353 -10.040 -7.829 16.410 hybrid contribution -0.382 0.277 0.109 0.484 sum 9.971 -9.764 -7.720 15.949 Atomic orbital electron populations 1.23068 0.78325 1.03613 1.01946 1.86002 1.21371 1.26970 1.88889 1.18817 0.91710 0.84186 0.97534 1.21143 1.00314 0.91486 1.06814 1.19687 0.93379 0.94586 0.95917 1.20913 0.98028 0.92214 0.92250 1.60310 1.22877 1.36342 1.09685 1.21562 0.95428 0.86680 0.98426 1.18833 0.94943 0.91436 0.90081 1.20333 0.89780 1.11752 1.28385 0.92329 1.24935 0.97923 0.95315 0.95379 1.70033 1.10521 1.29990 1.42009 0.86615 0.80568 0.82396 0.78862 1.19783 1.21378 1.21219 1.22992 0.92480 1.09902 1.00022 1.22492 0.97770 0.96445 1.02300 1.20930 0.93328 0.98253 1.04360 1.20763 0.99389 0.91069 0.99208 1.19173 0.90585 0.96036 1.06954 1.20555 0.98599 0.94790 1.01807 0.92694 0.88512 0.92090 0.85149 0.90580 0.95332 0.85005 0.90963 0.98552 0.93449 0.90578 0.92284 0.92330 0.89726 0.86291 0.85769 0.91846 0.91972 0.91406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.81 101.05 0.99 1.27 16 2 O -0.32 -4.34 9.54 -19.42 -0.19 -4.53 16 3 C 0.12 1.78 6.66 -39.21 -0.26 1.52 16 4 C -0.18 -2.73 8.69 -39.43 -0.34 -3.08 16 5 C -0.04 -0.54 5.39 -104.65 -0.56 -1.10 16 6 C 0.09 1.56 5.80 -4.97 -0.03 1.53 16 7 N -0.66 -12.97 6.34 -115.05 -0.73 -13.69 16 8 C 0.11 2.37 5.51 -3.83 -0.02 2.35 16 9 C 0.05 1.17 1.64 -155.67 -0.25 0.91 16 10 C -0.46 -12.70 8.71 -34.44 -0.30 -13.01 16 11 H 0.06 1.65 7.82 -52.49 -0.41 1.24 16 12 C 0.07 1.81 5.43 -17.82 -0.10 1.72 16 13 N -0.89 -25.21 12.65 55.43 0.70 -24.50 16 14 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 15 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 16 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 17 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 18 C -0.22 -4.75 9.96 -26.70 -0.27 -5.02 16 19 C -0.15 -3.61 9.15 -26.70 -0.24 -3.86 16 20 C -0.15 -2.03 9.70 -39.56 -0.38 -2.41 16 21 C -0.09 -1.07 9.70 -39.61 -0.38 -1.46 16 22 C -0.13 -1.68 5.89 -104.47 -0.62 -2.29 16 23 C -0.10 -1.07 9.79 36.01 0.35 -0.71 16 24 H 0.05 0.56 7.66 -51.93 -0.40 0.16 16 25 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 26 H 0.06 0.71 7.66 -51.93 -0.40 0.31 16 27 H 0.13 1.97 6.30 -52.49 -0.33 1.64 16 28 H 0.08 1.27 8.08 -51.93 -0.42 0.86 16 29 H 0.03 0.43 8.08 -51.93 -0.42 0.01 16 30 H 0.33 6.24 8.78 -39.29 -0.34 5.90 16 31 H 0.07 1.76 8.13 -51.93 -0.42 1.34 16 32 H 0.00 -0.07 8.10 -51.92 -0.42 -0.49 16 33 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 34 H 0.08 1.68 8.14 -51.93 -0.42 1.25 16 35 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 37 H 0.08 2.17 8.14 -51.93 -0.42 1.75 16 38 H 0.12 1.42 8.06 -52.49 -0.42 0.99 16 39 H 0.12 1.21 8.06 -52.49 -0.42 0.78 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.06 0.56 8.09 -51.93 -0.42 0.14 16 42 H 0.07 0.74 7.53 -51.93 -0.39 0.35 16 LS Contribution 350.74 15.07 5.29 5.29 Total: -1.00 -29.49 350.74 -9.26 -38.75 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: -6.89 Total: 5.83 kcal Atomic # 6 Polarization: -21.20 SS G_CDS: -2.42 Total: -23.62 kcal Atomic # 7 Polarization: -38.17 SS G_CDS: -0.03 Total: -38.20 kcal Atomic # 8 Polarization: -4.34 SS G_CDS: -0.19 Total: -4.53 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -29.49 -9.26 -38.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430037756.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.159 kcal (2) G-P(sol) polarization free energy of solvation -29.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds