Wall clock time and date at job start Mon Mar 30 2020 01:27:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35899 * 116.99832 * 2 1 4 4 C 1.38756 * 120.05452 * 359.97438 * 3 2 1 5 5 C 1.38121 * 119.94179 * 180.02562 * 4 3 2 6 6 C 1.50700 * 119.97333 * 179.97438 * 5 4 3 7 7 N 1.46910 * 109.47012 * 90.00238 * 6 5 4 8 8 C 1.46895 * 110.99971 * 180.02562 * 7 6 5 9 9 C 1.53003 * 109.47038 * 174.87619 * 8 7 6 10 10 C 1.50696 * 115.54453 * 296.30160 * 9 8 7 11 11 H 1.08001 * 120.00294 * 95.20676 * 10 9 8 12 12 C 1.37877 * 119.99957 * 274.92366 * 10 9 8 13 13 N 1.31514 * 119.99940 * 355.42608 * 12 10 9 14 14 Si 1.86797 * 119.99963 * 175.42038 * 12 10 9 15 15 H 1.48502 * 109.47311 * 0.02562 * 14 12 10 16 16 H 1.48498 * 109.47232 * 120.00635 * 14 12 10 17 17 H 1.48500 * 109.47387 * 240.00519 * 14 12 10 18 18 C 1.52992 * 117.50019 * 81.97289 * 9 8 7 19 19 C 1.52997 * 117.49882 * 150.63170 * 9 8 7 20 20 C 1.38292 * 120.05629 * 0.27223 * 5 4 3 21 21 C 1.38242 * 120.11073 * 359.45475 * 20 5 4 22 22 C 1.38169 * 120.05628 * 0.54376 * 21 20 5 23 23 C 1.50701 * 120.02988 * 179.70673 * 22 21 20 24 24 H 1.09000 * 109.46709 * 60.00286 * 1 2 3 25 25 H 1.09000 * 109.47022 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47461 * 300.00191 * 1 2 3 27 27 H 1.07994 * 120.02749 * 0.04675 * 4 3 2 28 28 H 1.08991 * 109.46912 * 330.00530 * 6 5 4 29 29 H 1.09002 * 109.47554 * 209.99758 * 6 5 4 30 30 H 1.00901 * 110.99734 * 56.04265 * 7 6 5 31 31 H 1.08996 * 109.47777 * 54.86957 * 8 7 6 32 32 H 1.09010 * 109.46633 * 294.86997 * 8 7 6 33 33 H 0.97010 * 119.99605 * 179.97438 * 13 12 10 34 34 H 1.08998 * 117.49867 * 215.00457 * 18 9 8 35 35 H 1.09002 * 117.49985 * 0.02562 * 18 9 8 36 36 H 1.09005 * 117.50012 * 359.97438 * 19 9 8 37 37 H 1.09000 * 117.49705 * 144.96683 * 19 9 8 38 38 H 1.08000 * 119.94281 * 179.70396 * 20 5 4 39 39 H 1.08002 * 119.97181 * 180.25147 * 21 20 5 40 40 H 1.09001 * 109.47064 * 270.02381 * 23 22 21 41 41 H 1.09003 * 109.46887 * 30.02015 * 23 22 21 42 42 H 1.08993 * 109.46902 * 150.02193 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3753 -0.0005 5 6 1.9207 3.6047 -0.0011 6 6 1.1018 4.8698 -0.0022 7 7 0.8352 5.2818 1.3825 8 6 0.0367 6.5142 1.4205 9 6 -0.3281 6.8409 2.8701 10 6 -1.2070 5.8313 3.5623 11 1 -0.7642 5.0594 4.1744 12 6 -2.5767 5.8964 3.4191 13 7 -3.1217 6.8909 2.7531 14 14 -3.6584 4.5719 4.1707 15 1 -2.8071 3.5717 4.8637 16 1 -4.5907 5.1896 5.1477 17 1 -4.4374 3.9016 3.0988 18 6 0.7216 7.5626 3.7173 19 6 -0.5216 8.3141 3.2350 20 6 3.3018 3.6758 -0.0068 21 6 4.0559 2.5172 -0.0005 22 6 3.4311 1.2848 0.0000 23 6 4.2537 0.0222 0.0001 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 0.2127 2.3203 -0.0002 28 1 0.1575 4.6908 -0.5162 29 1 1.6517 5.6582 -0.5163 30 1 1.6950 5.3915 1.8990 31 1 -0.8746 6.3749 0.8390 32 1 0.6157 7.3354 0.9977 33 1 -4.0854 6.9365 2.6520 34 1 0.7766 7.3071 4.7755 35 1 1.6721 7.8051 3.2420 36 1 -0.3885 9.0506 2.4425 37 1 -1.2849 8.5531 3.9756 38 1 3.7921 4.6381 -0.0120 39 1 5.1343 2.5753 -0.0009 40 1 4.4521 -0.2823 -1.0275 41 1 5.1978 0.2036 0.5139 42 1 3.7064 -0.7680 0.5140 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430037756.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:40 Heat of formation + Delta-G solvation = -10.963618 kcal Electronic energy + Delta-G solvation = -20982.339208 eV Core-core repulsion = 17927.390021 eV Total energy + Delta-G solvation = -3054.949187 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.20383 -39.03332 -38.38830 -36.13909 -33.93580 -33.43823 -31.06682 -29.30519 -28.40796 -27.57267 -26.06583 -24.15812 -23.13030 -22.80419 -21.83283 -20.90280 -18.55211 -18.00656 -17.38245 -16.71460 -16.68656 -16.44346 -16.15271 -15.55051 -15.30493 -15.23085 -14.75262 -14.66649 -14.33533 -13.97660 -13.42052 -13.34044 -13.20701 -12.94027 -12.85625 -12.83604 -12.62194 -12.57372 -12.35136 -12.17664 -12.00408 -11.92544 -11.70059 -11.20843 -10.87962 -10.33087 -9.92805 -9.64353 -9.15000 -8.94563 -8.03552 -6.09920 0.36304 0.52145 1.38784 1.41848 1.52661 2.39306 2.46738 2.74180 3.26050 3.40647 3.69752 3.79588 3.90619 4.12586 4.22197 4.29285 4.33896 4.37009 4.41151 4.52950 4.64279 4.64993 4.70417 4.72644 4.75227 4.82370 4.83933 4.88347 4.99069 5.00500 5.07326 5.31464 5.33636 5.41700 5.56997 5.68693 5.70915 5.71756 5.87301 5.90518 6.31909 6.44551 6.50247 6.71169 6.93325 7.55011 9.04963 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.017053 B = 0.004862 C = 0.004059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.553532 B = 5757.765788 C = 6897.299539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.327 6.327 3 C 0.107 3.893 4 C -0.196 4.196 5 C -0.053 4.053 6 C 0.102 3.898 7 N -0.674 5.674 8 C 0.123 3.877 9 C 0.020 3.980 10 C -0.475 4.475 11 H 0.043 0.957 12 C 0.022 3.978 13 N -0.912 5.912 14 Si 0.942 3.058 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.283 1.283 18 C -0.189 4.189 19 C -0.159 4.159 20 C -0.150 4.150 21 C -0.082 4.082 22 C -0.133 4.133 23 C -0.098 4.098 24 H 0.058 0.942 25 H 0.124 0.876 26 H 0.047 0.953 27 H 0.120 0.880 28 H 0.062 0.938 29 H 0.046 0.954 30 H 0.339 0.661 31 H 0.040 0.960 32 H 0.014 0.986 33 H 0.256 0.744 34 H 0.072 0.928 35 H 0.090 0.910 36 H 0.071 0.929 37 H 0.057 0.943 38 H 0.138 0.862 39 H 0.158 0.842 40 H 0.075 0.925 41 H 0.082 0.918 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.126 -10.296 -8.155 18.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.241 6.241 3 C 0.062 3.938 4 C -0.216 4.216 5 C -0.053 4.053 6 C -0.027 4.027 7 N -0.305 5.305 8 C -0.006 4.006 9 C 0.020 3.980 10 C -0.513 4.513 11 H 0.062 0.938 12 C -0.177 4.177 13 N -0.552 5.552 14 Si 0.769 3.231 15 H -0.197 1.197 16 H -0.210 1.210 17 H -0.209 1.209 18 C -0.226 4.226 19 C -0.197 4.197 20 C -0.169 4.169 21 C -0.100 4.100 22 C -0.134 4.134 23 C -0.155 4.155 24 H 0.077 0.923 25 H 0.143 0.857 26 H 0.066 0.934 27 H 0.138 0.862 28 H 0.081 0.919 29 H 0.064 0.936 30 H 0.157 0.843 31 H 0.058 0.942 32 H 0.032 0.968 33 H 0.065 0.935 34 H 0.091 0.909 35 H 0.108 0.892 36 H 0.090 0.910 37 H 0.076 0.924 38 H 0.155 0.845 39 H 0.175 0.825 40 H 0.094 0.906 41 H 0.101 0.899 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 12.463 -10.835 -8.144 18.413 hybrid contribution -0.994 0.482 0.207 1.124 sum 11.468 -10.353 -7.937 17.370 Atomic orbital electron populations 1.23235 0.77263 1.05295 1.01490 1.85986 1.22518 1.26681 1.88877 1.19055 0.92564 0.84138 0.98073 1.21180 1.00093 0.92286 1.08021 1.19642 0.94260 0.93724 0.97697 1.20842 0.97994 0.93404 0.90460 1.60176 1.23234 1.35162 1.11931 1.21207 0.94789 0.88276 0.96316 1.18960 0.96327 0.91071 0.91678 1.20527 0.90548 1.11988 1.28282 0.93844 1.25543 0.99095 0.97013 0.96021 1.70123 1.10610 1.31271 1.43166 0.85758 0.78994 0.80191 0.78171 1.19728 1.20971 1.20909 1.22974 0.92857 1.07141 0.99649 1.22386 0.98429 0.96554 1.02311 1.21169 0.92531 0.99675 1.03529 1.21145 1.00993 0.90199 0.97678 1.19631 0.90341 0.97624 1.05792 1.20598 0.98892 0.93245 1.02764 0.92300 0.85747 0.93434 0.86214 0.91930 0.93575 0.84299 0.94169 0.96850 0.93547 0.90905 0.89153 0.91030 0.92427 0.84456 0.82490 0.90647 0.89921 0.92149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.47 9.81 113.37 1.11 1.58 16 2 O -0.33 -8.74 9.54 -92.41 -0.88 -9.62 16 3 C 0.11 3.05 6.66 22.51 0.15 3.20 16 4 C -0.20 -6.07 8.69 22.37 0.19 -5.87 16 5 C -0.05 -1.57 5.39 -19.88 -0.11 -1.68 16 6 C 0.10 3.29 5.80 85.55 0.50 3.78 16 7 N -0.67 -26.08 6.34 -517.91 -3.28 -29.37 16 8 C 0.12 5.40 5.51 86.31 0.48 5.88 16 9 C 0.02 0.99 1.64 -52.93 -0.09 0.91 16 10 C -0.48 -26.32 8.71 25.60 0.22 -26.09 16 11 H 0.04 2.48 7.82 -2.91 -0.02 2.45 16 12 C 0.02 1.22 5.43 84.65 0.46 1.68 16 13 N -0.91 -52.74 12.65 21.45 0.27 -52.47 16 14 Si 0.94 44.77 29.54 68.60 2.03 46.80 16 15 H -0.27 -12.80 7.11 99.48 0.71 -12.10 16 16 H -0.28 -13.22 7.11 99.48 0.71 -12.52 16 17 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 18 C -0.19 -7.99 9.96 30.61 0.30 -7.69 16 19 C -0.16 -7.50 9.15 30.62 0.28 -7.22 16 20 C -0.15 -3.72 9.70 22.28 0.22 -3.50 16 21 C -0.08 -1.80 9.70 22.25 0.22 -1.59 16 22 C -0.13 -3.25 5.89 -19.77 -0.12 -3.37 16 23 C -0.10 -1.83 9.79 71.24 0.70 -1.13 16 24 H 0.06 1.21 7.66 -2.39 -0.02 1.19 16 25 H 0.12 1.93 8.14 -2.39 -0.02 1.91 16 26 H 0.05 1.14 7.66 -2.39 -0.02 1.12 16 27 H 0.12 3.80 6.30 -2.91 -0.02 3.78 16 28 H 0.06 2.15 8.08 -2.39 -0.02 2.13 16 29 H 0.05 1.33 8.08 -2.39 -0.02 1.31 16 30 H 0.34 12.25 8.78 -89.69 -0.79 11.47 16 31 H 0.04 2.00 8.13 -2.39 -0.02 1.98 16 32 H 0.01 0.54 8.10 -2.38 -0.02 0.52 16 33 H 0.26 14.18 8.31 -92.70 -0.77 13.41 16 34 H 0.07 3.11 8.14 -2.39 -0.02 3.09 16 35 H 0.09 3.25 8.14 -2.39 -0.02 3.24 16 36 H 0.07 3.14 8.14 -2.38 -0.02 3.12 16 37 H 0.06 3.00 8.14 -2.39 -0.02 2.98 16 38 H 0.14 2.83 8.06 -2.91 -0.02 2.81 16 39 H 0.16 2.36 8.06 -2.91 -0.02 2.33 16 40 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.08 1.19 8.09 -2.39 -0.02 1.17 16 42 H 0.06 1.21 7.53 -2.39 -0.02 1.19 16 Total: -1.00 -63.35 350.74 2.85 -60.49 By element: Atomic # 1 Polarization: 25.07 SS G_CDS: 0.21 Total: 25.28 kcal Atomic # 6 Polarization: -45.62 SS G_CDS: 4.52 Total: -41.10 kcal Atomic # 7 Polarization: -78.82 SS G_CDS: -3.01 Total: -81.84 kcal Atomic # 8 Polarization: -8.74 SS G_CDS: -0.88 Total: -9.62 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -63.35 2.85 -60.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430037756.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.528 kcal (2) G-P(sol) polarization free energy of solvation -63.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds