Wall clock time and date at job start Mon Mar 30 2020 02:06:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50708 * 109.47141 * 2 1 4 4 C 1.38230 * 119.99896 * 269.72872 * 3 2 1 5 5 C 1.38238 * 119.99734 * 179.76790 * 4 3 2 6 6 C 1.38241 * 119.99644 * 0.48053 * 5 4 3 7 7 C 1.50699 * 119.99538 * 179.77244 * 6 5 4 8 8 C 1.50708 * 109.47211 * 270.02243 * 7 6 5 9 9 O 1.21278 * 119.99502 * 0.02562 * 8 7 6 10 10 N 1.34775 * 119.99944 * 180.02562 * 8 7 6 11 11 C 1.46501 * 120.00169 * 0.02562 * 10 8 7 12 12 C 1.53000 * 109.46915 * 89.99976 * 11 10 8 13 13 C 1.46499 * 119.99461 * 180.02562 * 10 8 7 14 14 C 1.50694 * 109.47380 * 90.00454 * 13 10 8 15 15 H 1.08003 * 120.00082 * 359.97438 * 14 13 10 16 16 C 1.37878 * 120.00386 * 180.02562 * 14 13 10 17 17 N 1.31518 * 119.99623 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00039 * 179.97438 * 16 14 13 19 19 H 1.48492 * 109.47537 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.47237 * 119.99842 * 18 16 14 21 21 H 1.48503 * 109.47012 * 239.99475 * 18 16 14 22 22 C 1.38231 * 120.00246 * 359.79479 * 6 5 4 23 23 C 1.38233 * 119.99821 * 359.95399 * 22 6 5 24 24 H 1.09002 * 109.47153 * 299.99670 * 1 2 3 25 25 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 59.99842 * 1 2 3 27 27 H 1.08996 * 109.47853 * 120.00301 * 2 1 3 28 28 H 1.09002 * 109.47153 * 240.00330 * 2 1 3 29 29 H 1.07999 * 120.00202 * 359.97438 * 4 3 2 30 30 H 1.07995 * 120.00141 * 180.25854 * 5 4 3 31 31 H 1.09004 * 109.47431 * 30.02160 * 7 6 5 32 32 H 1.09002 * 109.46963 * 150.02319 * 7 6 5 33 33 H 1.08993 * 109.46995 * 209.99854 * 11 10 8 34 34 H 1.08996 * 109.47148 * 330.00018 * 11 10 8 35 35 H 1.09002 * 109.47078 * 299.99799 * 12 11 10 36 36 H 1.08996 * 109.47179 * 60.00061 * 12 11 10 37 37 H 1.09004 * 109.46999 * 179.97438 * 12 11 10 38 38 H 1.08998 * 109.46751 * 210.00037 * 13 10 8 39 39 H 1.08993 * 109.47470 * 329.99713 * 13 10 8 40 40 H 0.96999 * 119.99253 * 180.02562 * 17 16 14 41 41 H 1.07996 * 120.00113 * 179.97438 * 22 6 5 42 42 H 1.08003 * 119.99863 * 179.97438 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2681 2.0706 -1.1971 5 6 2.7243 3.3755 -1.1971 6 6 2.9542 4.0273 0.0002 7 6 3.4564 5.4481 0.0001 8 6 4.9635 5.4482 0.0001 9 8 5.5699 4.3979 -0.0004 10 7 5.6373 6.6155 0.0006 11 6 4.9047 7.8842 0.0017 12 6 4.6503 8.3248 1.4447 13 6 7.1023 6.6155 0.0000 14 6 7.6041 6.6165 -1.4210 15 1 6.9019 6.6167 -2.2416 16 6 8.9595 6.6162 -1.6735 17 7 9.8145 6.6154 -0.6742 18 14 9.5814 6.6168 -3.4350 19 1 8.4261 6.6170 -4.3679 20 1 10.4067 7.8291 -3.6681 21 1 10.4060 5.4041 -3.6692 22 6 2.7239 3.3756 1.1972 23 6 2.2627 2.0725 1.1972 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 2.0926 1.5599 -2.1324 30 1 2.9045 3.8846 -2.1323 31 1 3.0931 5.9620 -0.8899 32 1 3.0931 5.9619 0.8902 33 1 5.4935 8.6441 -0.5118 34 1 3.9521 7.7541 -0.5118 35 1 4.0615 7.5648 1.9582 36 1 5.6029 8.4549 1.9582 37 1 4.1056 9.2690 1.4455 38 1 7.4658 7.5051 0.5142 39 1 7.4659 5.7253 0.5130 40 1 10.7681 6.6156 -0.8519 41 1 2.9039 3.8846 2.1325 42 1 2.0832 1.5632 2.1325 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000439137225.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:39 Heat of formation + Delta-G solvation = -50.297610 kcal Electronic energy + Delta-G solvation = -20930.110694 eV Core-core repulsion = 17873.455858 eV Total energy + Delta-G solvation = -3056.654837 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.05698 -39.90181 -36.94725 -35.52246 -34.88461 -32.29125 -31.78362 -31.50416 -29.41706 -27.78883 -25.08904 -24.31476 -23.62088 -23.55810 -21.49142 -19.86794 -18.63288 -17.88728 -17.44724 -16.82547 -16.73940 -16.24439 -15.89305 -15.63896 -14.74157 -14.64502 -14.58230 -14.48722 -14.38295 -14.12062 -13.71987 -13.63281 -13.28251 -13.14193 -12.91427 -12.82721 -12.68983 -12.56949 -12.40141 -12.17350 -12.05132 -11.83325 -11.69209 -11.65644 -11.62235 -10.66069 -10.62182 -9.76568 -9.42345 -9.36284 -8.23347 -6.38271 0.43679 0.55781 1.34581 1.37285 1.49081 1.87769 2.31125 2.45221 2.92430 3.05987 3.73634 3.90378 3.91765 4.00974 4.14559 4.19276 4.22905 4.42360 4.49715 4.52465 4.59269 4.62101 4.66441 4.76860 4.79602 4.96107 5.00575 5.06281 5.07553 5.10527 5.18017 5.24668 5.25797 5.40182 5.41914 5.54561 5.58265 5.73379 5.75313 5.87492 6.06491 6.17253 6.70150 6.83209 7.28084 7.52764 8.83885 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.019786 B = 0.004199 C = 0.003717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.819947 B = 6667.010166 C = 7530.885473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.083 4.083 3 C -0.093 4.093 4 C -0.128 4.128 5 C -0.121 4.121 6 C -0.082 4.082 7 C -0.088 4.088 8 C 0.498 3.502 9 O -0.594 6.594 10 N -0.605 5.605 11 C 0.098 3.902 12 C -0.161 4.161 13 C 0.263 3.737 14 C -0.541 4.541 15 H 0.053 0.947 16 C 0.005 3.995 17 N -0.929 5.929 18 Si 0.968 3.032 19 H -0.266 1.266 20 H -0.268 1.268 21 H -0.282 1.282 22 C -0.118 4.118 23 C -0.127 4.127 24 H 0.054 0.946 25 H 0.071 0.929 26 H 0.052 0.948 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.135 0.865 30 H 0.120 0.880 31 H 0.120 0.880 32 H 0.125 0.875 33 H 0.070 0.930 34 H 0.103 0.897 35 H 0.061 0.939 36 H 0.036 0.964 37 H 0.096 0.904 38 H 0.021 0.979 39 H -0.007 1.007 40 H 0.267 0.733 41 H 0.127 0.873 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.987 -4.160 2.182 21.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.121 4.121 3 C -0.093 4.093 4 C -0.146 4.146 5 C -0.139 4.139 6 C -0.083 4.083 7 C -0.128 4.128 8 C 0.287 3.713 9 O -0.474 6.474 10 N -0.336 5.336 11 C -0.024 4.024 12 C -0.220 4.220 13 C 0.141 3.859 14 C -0.580 4.580 15 H 0.071 0.929 16 C -0.193 4.193 17 N -0.569 5.569 18 Si 0.793 3.207 19 H -0.190 1.190 20 H -0.193 1.193 21 H -0.208 1.208 22 C -0.136 4.136 23 C -0.145 4.145 24 H 0.073 0.927 25 H 0.090 0.910 26 H 0.072 0.928 27 H 0.095 0.905 28 H 0.093 0.907 29 H 0.153 0.847 30 H 0.138 0.862 31 H 0.138 0.862 32 H 0.143 0.857 33 H 0.089 0.911 34 H 0.121 0.879 35 H 0.080 0.920 36 H 0.055 0.945 37 H 0.115 0.885 38 H 0.039 0.961 39 H 0.011 0.989 40 H 0.076 0.924 41 H 0.145 0.855 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -20.485 -4.663 2.229 21.127 hybrid contribution 1.244 0.112 -0.686 1.426 sum -19.241 -4.551 1.543 19.832 Atomic orbital electron populations 1.21710 0.93615 1.02450 1.02028 1.20580 0.97009 0.91120 1.03348 1.20197 0.98905 0.97309 0.92898 1.21203 1.00315 0.94479 0.98569 1.21185 0.99285 0.95783 0.97636 1.19520 0.99056 0.95636 0.94051 1.20753 0.89531 0.95632 1.06855 1.21241 0.91045 0.83056 0.75932 1.90651 1.71769 1.33026 1.52003 1.48306 1.07472 1.06617 1.71237 1.21767 0.97274 0.84784 0.98557 1.22162 1.01515 1.02727 0.95551 1.18664 0.76108 0.95276 0.95818 1.21752 0.92180 1.50949 0.93098 0.92874 1.25889 0.96916 0.94479 1.02045 1.70068 1.02642 1.51205 1.33016 0.85355 0.78324 0.77976 0.79075 1.19041 1.19274 1.20841 1.21184 0.99136 0.95694 0.97554 1.21225 1.00188 0.94539 0.98504 0.92653 0.91004 0.92836 0.90465 0.90689 0.84721 0.86154 0.86202 0.85657 0.91106 0.87916 0.91957 0.94493 0.88543 0.96139 0.98906 0.92438 0.85519 0.84364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 9.89 71.98 0.71 -1.31 16 2 C -0.08 -1.49 6.07 29.85 0.18 -1.30 16 3 C -0.09 -2.27 5.13 -19.86 -0.10 -2.37 16 4 C -0.13 -3.37 9.70 22.27 0.22 -3.15 16 5 C -0.12 -3.61 9.70 22.27 0.22 -3.39 16 6 C -0.08 -2.52 4.37 -19.87 -0.09 -2.60 16 7 C -0.09 -2.55 4.38 29.10 0.13 -2.43 16 8 C 0.50 21.25 7.67 87.66 0.67 21.92 16 9 O -0.59 -32.12 15.61 -3.02 -0.05 -32.17 16 10 N -0.61 -26.09 2.46 -826.19 -2.03 -28.12 16 11 C 0.10 2.99 5.93 86.38 0.51 3.50 16 12 C -0.16 -3.96 10.24 71.98 0.74 -3.22 16 13 C 0.26 14.59 5.16 85.63 0.44 15.03 16 14 C -0.54 -31.96 9.39 25.60 0.24 -31.72 16 15 H 0.05 3.10 7.81 -2.91 -0.02 3.08 16 16 C 0.01 0.32 5.46 84.65 0.46 0.78 16 17 N -0.93 -57.43 13.29 21.45 0.28 -57.15 16 18 Si 0.97 45.78 29.54 68.60 2.03 47.80 16 19 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 20 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 21 H -0.28 -13.27 7.11 99.48 0.71 -12.57 16 22 C -0.12 -3.35 9.70 22.27 0.22 -3.13 16 23 C -0.13 -3.21 9.70 22.27 0.22 -2.99 16 24 H 0.05 0.79 8.14 -2.39 -0.02 0.78 16 25 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 26 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16 27 H 0.08 1.26 8.09 -2.39 -0.02 1.24 16 28 H 0.07 1.26 8.08 -2.39 -0.02 1.24 16 29 H 0.13 2.93 8.06 -2.91 -0.02 2.91 16 30 H 0.12 3.40 8.06 -2.91 -0.02 3.37 16 31 H 0.12 2.84 7.35 -2.38 -0.02 2.82 16 32 H 0.13 2.80 7.13 -2.39 -0.02 2.78 16 33 H 0.07 2.30 8.07 -2.39 -0.02 2.28 16 34 H 0.10 2.35 6.44 -2.39 -0.02 2.33 16 35 H 0.06 1.39 7.22 -2.39 -0.02 1.37 16 36 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.10 1.69 8.14 -2.38 -0.02 1.67 16 38 H 0.02 1.16 8.07 -2.39 -0.02 1.14 16 39 H -0.01 -0.46 7.42 -2.39 -0.02 -0.48 16 40 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 41 H 0.13 3.22 8.06 -2.91 -0.02 3.19 16 42 H 0.14 2.78 8.06 -2.91 -0.02 2.76 16 Total: -1.00 -77.50 351.64 5.97 -71.53 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: 0.97 Total: 14.49 kcal Atomic # 6 Polarization: -21.15 SS G_CDS: 4.76 Total: -16.39 kcal Atomic # 7 Polarization: -83.52 SS G_CDS: -1.74 Total: -85.27 kcal Atomic # 8 Polarization: -32.12 SS G_CDS: -0.05 Total: -32.17 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.80 kcal Total: -77.50 5.97 -71.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439137225.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.236 kcal (2) G-P(sol) polarization free energy of solvation -77.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds