Wall clock time and date at job start Mon Mar 30 2020 01:28:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50700 * 120.00285 * 2 1 4 4 N 1.46895 * 109.47457 * 122.78078 * 3 2 1 5 5 C 1.46901 * 111.00187 * 198.95680 * 4 3 2 6 6 C 1.50703 * 109.46715 * 66.04682 * 5 4 3 7 7 H 1.07994 * 120.00153 * 359.97438 * 6 5 4 8 8 C 1.37881 * 119.99514 * 180.02562 * 6 5 4 9 9 N 1.31509 * 120.00272 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 119.99774 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47070 * 89.99619 * 10 8 6 12 12 H 1.48497 * 109.47283 * 209.99688 * 10 8 6 13 13 H 1.48498 * 109.46940 * 329.99981 * 10 8 6 14 14 C 1.46899 * 111.00077 * 75.00628 * 4 3 2 15 15 C 1.50703 * 109.47231 * 196.62403 * 14 4 3 16 16 C 1.38159 * 120.02632 * 254.50729 * 15 14 4 17 17 C 1.38245 * 120.05399 * 179.74593 * 16 15 14 18 18 C 1.38292 * 120.11281 * 0.55422 * 17 16 15 19 19 C 1.50697 * 119.97844 * 179.72091 * 18 17 16 20 20 C 1.38125 * 120.05206 * 359.70704 * 18 17 16 21 21 C 1.38712 * 120.02555 * 74.78917 * 15 14 4 22 22 O 1.35901 * 120.05759 * 359.95565 * 21 15 14 23 23 C 1.42902 * 116.99901 * 180.02562 * 22 21 15 24 24 H 1.08003 * 119.99318 * 0.02562 * 1 2 3 25 25 H 1.07997 * 120.00145 * 180.02562 * 1 2 3 26 26 H 1.07997 * 119.99832 * 179.97438 * 2 1 3 27 27 H 1.09002 * 109.47018 * 2.77569 * 3 2 1 28 28 H 1.09001 * 109.47199 * 242.78281 * 3 2 1 29 29 H 1.08995 * 109.47628 * 186.04541 * 5 4 3 30 30 H 1.09000 * 109.47245 * 306.04862 * 5 4 3 31 31 H 0.97006 * 120.00277 * 179.97438 * 9 8 6 32 32 H 1.09002 * 109.47289 * 316.62282 * 14 4 3 33 33 H 1.09006 * 109.47148 * 76.62114 * 14 4 3 34 34 H 1.07995 * 119.97811 * 0.02848 * 16 15 14 35 35 H 1.08007 * 119.94862 * 180.25982 * 17 16 15 36 36 H 1.08998 * 109.47374 * 269.98841 * 19 18 17 37 37 H 1.09005 * 109.46247 * 29.98017 * 19 18 17 38 38 H 1.08989 * 109.47468 * 149.98190 * 19 18 17 39 39 H 1.07995 * 120.02754 * 180.02562 * 20 18 17 40 40 H 1.09001 * 109.46629 * 179.97438 * 23 22 21 41 41 H 1.09003 * 109.46540 * 299.99495 * 23 22 21 42 42 H 1.08998 * 109.47124 * 59.99614 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9578 1.3542 1.1644 5 6 3.3627 2.7352 1.4593 6 6 2.1589 3.5287 1.8980 7 1 1.1900 3.0546 1.9519 8 6 2.2944 4.8601 2.2296 9 7 3.4741 5.4375 2.1636 10 14 0.8024 5.8435 2.7741 11 1 0.6574 5.7472 4.2488 12 1 0.9786 7.2660 2.3859 13 1 -0.4147 5.2991 2.1204 14 6 4.1310 0.4932 0.9639 15 6 4.8023 0.2421 2.2896 16 6 5.9888 0.8804 2.5956 17 6 6.6023 0.6544 3.8136 18 6 6.0365 -0.2193 4.7240 19 6 6.7112 -0.4682 6.0484 20 6 4.8532 -0.8640 4.4206 21 6 4.2324 -0.6345 3.2011 22 8 3.0679 -1.2673 2.9004 23 6 2.5388 -2.1555 3.8868 24 1 -0.5399 0.9354 -0.0004 25 1 -0.5400 -0.9353 0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3563 2.1330 0.0498 28 1 2.6523 1.3847 -0.9139 29 1 4.1067 2.7335 2.2559 30 1 3.7897 3.1877 0.5643 31 1 3.5694 6.3743 2.3965 32 1 3.8154 -0.4560 0.5309 33 1 4.8317 0.9852 0.2892 34 1 6.4350 1.5598 1.8846 35 1 7.5277 1.1575 4.0528 36 1 7.4035 -1.3045 5.9520 37 1 7.2595 0.4244 6.3500 38 1 5.9589 -0.7041 6.8008 39 1 4.4115 -1.5460 5.1320 40 1 1.6095 -2.5925 3.5211 41 1 3.2599 -2.9483 4.0860 42 1 2.3431 -1.6030 4.8058 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449336724.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:15 Heat of formation + Delta-G solvation = 8.469027 kcal Electronic energy + Delta-G solvation = -21697.266920 eV Core-core repulsion = 18643.160396 eV Total energy + Delta-G solvation = -3054.106524 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.91109 -37.34032 -36.77234 -33.38362 -32.82791 -31.60906 -29.73999 -28.35506 -27.25796 -26.73467 -24.69922 -23.38221 -21.86153 -20.96952 -20.14073 -18.97285 -17.11052 -16.35978 -15.90333 -15.55438 -15.32757 -14.69594 -14.60366 -13.96740 -13.94159 -13.71376 -13.47478 -13.42562 -12.88235 -12.29284 -12.18370 -12.04102 -11.85143 -11.78096 -11.48045 -11.29771 -11.05710 -10.89848 -10.68466 -10.59668 -10.55427 -10.32147 -10.13262 -9.78888 -9.13280 -8.77874 -8.38777 -8.30204 -7.62898 -7.08669 -5.95967 -3.95837 1.70282 1.89108 2.88446 3.35663 3.41333 3.45173 3.68492 4.11680 4.49076 4.99030 5.12076 5.23926 5.27092 5.32736 5.37494 5.39624 5.51632 5.60587 5.65272 5.66798 5.71076 5.80071 5.90382 5.95118 6.00713 6.04628 6.16033 6.30253 6.39648 6.49316 6.65575 6.72232 6.85856 6.98595 7.17733 7.22951 7.38199 7.42355 7.44807 7.83411 7.89955 8.20037 8.32644 8.65234 9.12009 9.67441 11.14906 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.012791 B = 0.006725 C = 0.005262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2188.564824 B = 4162.827753 C = 5319.789980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.120 4.120 3 C 0.083 3.917 4 N -0.520 5.520 5 C 0.192 3.808 6 C -0.502 4.502 7 H 0.062 0.938 8 C 0.055 3.945 9 N -0.898 5.898 10 Si 0.894 3.106 11 H -0.281 1.281 12 H -0.288 1.288 13 H -0.274 1.274 14 C 0.102 3.898 15 C -0.096 4.096 16 C -0.067 4.067 17 C -0.159 4.159 18 C -0.059 4.059 19 C -0.110 4.110 20 C -0.217 4.217 21 C 0.154 3.846 22 O -0.295 6.295 23 C 0.030 3.970 24 H 0.093 0.907 25 H 0.086 0.914 26 H 0.098 0.902 27 H 0.090 0.910 28 H 0.026 0.974 29 H 0.036 0.964 30 H -0.012 1.012 31 H 0.260 0.740 32 H 0.069 0.931 33 H 0.030 0.970 34 H 0.125 0.875 35 H 0.118 0.882 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.062 0.938 39 H 0.121 0.879 40 H 0.094 0.906 41 H 0.046 0.954 42 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.301 -14.488 2.386 15.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.139 4.139 3 C -0.044 4.044 4 N -0.244 5.244 5 C 0.067 3.933 6 C -0.541 4.541 7 H 0.080 0.920 8 C -0.146 4.146 9 N -0.538 5.538 10 Si 0.722 3.278 11 H -0.208 1.208 12 H -0.214 1.214 13 H -0.199 1.199 14 C -0.026 4.026 15 C -0.097 4.097 16 C -0.086 4.086 17 C -0.177 4.177 18 C -0.060 4.060 19 C -0.167 4.167 20 C -0.236 4.236 21 C 0.108 3.892 22 O -0.208 6.208 23 C -0.066 4.066 24 H 0.112 0.888 25 H 0.105 0.895 26 H 0.116 0.884 27 H 0.108 0.892 28 H 0.044 0.956 29 H 0.054 0.946 30 H 0.005 0.995 31 H 0.069 0.931 32 H 0.088 0.912 33 H 0.048 0.952 34 H 0.143 0.857 35 H 0.136 0.864 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.139 0.861 40 H 0.112 0.888 41 H 0.065 0.935 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.005 -14.463 2.639 15.006 hybrid contribution -0.302 0.899 0.064 0.950 sum 2.704 -13.564 2.703 14.093 Atomic orbital electron populations 1.23631 0.95988 1.00904 1.03981 1.22952 0.95760 0.98450 0.96703 1.21177 0.96356 0.95542 0.91346 1.62100 1.14172 1.12423 1.35709 1.19770 0.96710 0.81416 0.95391 1.21173 0.94885 0.94087 1.43965 0.91966 1.24960 0.95868 0.97766 0.95957 1.69958 1.22441 1.12058 1.49385 0.86559 0.83160 0.79098 0.78961 1.20761 1.21381 1.19887 1.20815 0.92303 0.97676 0.91825 1.19155 0.95535 0.97849 0.97194 1.20891 0.94100 0.96899 0.96664 1.20803 1.01303 1.01093 0.94547 1.19556 0.94474 0.96067 0.95858 1.20747 1.00117 1.01930 0.93908 1.20964 0.98855 1.06297 0.97436 1.18705 0.85296 0.92416 0.92784 1.86202 1.35817 1.56376 1.42362 1.22955 0.98765 0.92274 0.92616 0.88824 0.89542 0.88394 0.89154 0.95613 0.94620 0.99468 0.93081 0.91223 0.95214 0.85711 0.86444 0.91561 0.91568 0.91938 0.86145 0.88805 0.93533 0.92983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.30 14.32 29.01 0.42 -2.89 16 2 C -0.12 -2.08 9.31 -36.03 -0.34 -2.42 16 3 C 0.08 1.69 5.25 -4.98 -0.03 1.67 16 4 N -0.52 -11.63 4.36 -238.96 -1.04 -12.67 16 5 C 0.19 5.10 4.56 -4.97 -0.02 5.08 16 6 C -0.50 -14.42 8.24 -34.44 -0.28 -14.70 16 7 H 0.06 1.79 7.30 -52.49 -0.38 1.41 16 8 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 9 N -0.90 -27.05 13.29 55.43 0.74 -26.31 16 10 Si 0.89 22.14 29.54 -169.99 -5.02 17.12 16 11 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 13 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 14 C 0.10 1.97 4.54 -4.98 -0.02 1.95 16 15 C -0.10 -1.82 4.71 -104.47 -0.49 -2.31 16 16 C -0.07 -1.19 8.95 -39.61 -0.35 -1.54 16 17 C -0.16 -2.54 9.70 -39.56 -0.38 -2.92 16 18 C -0.06 -0.89 5.88 -104.64 -0.62 -1.50 16 19 C -0.11 -1.24 10.01 36.00 0.36 -0.88 16 20 C -0.22 -3.39 8.69 -39.43 -0.34 -3.73 16 21 C 0.15 2.75 6.66 -39.22 -0.26 2.49 16 22 O -0.30 -5.03 9.83 -19.43 -0.19 -5.22 16 23 C 0.03 0.36 9.81 101.05 0.99 1.35 16 24 H 0.09 1.53 7.84 -52.48 -0.41 1.12 16 25 H 0.09 1.18 8.06 -52.49 -0.42 0.75 16 26 H 0.10 1.59 7.25 -52.49 -0.38 1.21 16 27 H 0.09 2.02 6.22 -51.93 -0.32 1.69 16 28 H 0.03 0.50 8.01 -51.93 -0.42 0.09 16 29 H 0.04 1.02 6.72 -51.93 -0.35 0.67 16 30 H -0.01 -0.35 8.12 -51.93 -0.42 -0.77 16 31 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 32 H 0.07 1.24 6.67 -51.93 -0.35 0.89 16 33 H 0.03 0.57 7.85 -51.93 -0.41 0.16 16 34 H 0.12 2.13 8.00 -52.49 -0.42 1.71 16 35 H 0.12 1.61 8.06 -52.48 -0.42 1.19 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.70 8.09 -51.93 -0.42 0.28 16 38 H 0.06 0.65 8.08 -51.94 -0.42 0.23 16 39 H 0.12 1.58 6.30 -52.49 -0.33 1.25 16 40 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 41 H 0.05 0.47 7.66 -51.93 -0.40 0.08 16 42 H 0.05 0.63 7.66 -51.93 -0.40 0.23 16 LS Contribution 346.92 15.07 5.23 5.23 Total: -1.00 -31.72 346.92 -8.41 -40.13 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -6.65 Total: 0.59 kcal Atomic # 6 Polarization: -17.40 SS G_CDS: -1.47 Total: -18.87 kcal Atomic # 7 Polarization: -38.68 SS G_CDS: -0.31 Total: -38.99 kcal Atomic # 8 Polarization: -5.03 SS G_CDS: -0.19 Total: -5.22 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.72 -8.41 -40.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449336724.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.604 kcal (2) G-P(sol) polarization free energy of solvation -31.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.135 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds