Wall clock time and date at job start Mon Mar 30 2020 01:28:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50700 * 120.00285 * 2 1 4 4 N 1.46895 * 109.47457 * 122.78078 * 3 2 1 5 5 C 1.46901 * 111.00187 * 198.95680 * 4 3 2 6 6 C 1.50703 * 109.46715 * 66.04682 * 5 4 3 7 7 H 1.07994 * 120.00153 * 359.97438 * 6 5 4 8 8 C 1.37881 * 119.99514 * 180.02562 * 6 5 4 9 9 N 1.31509 * 120.00272 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 119.99774 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47070 * 89.99619 * 10 8 6 12 12 H 1.48497 * 109.47283 * 209.99688 * 10 8 6 13 13 H 1.48498 * 109.46940 * 329.99981 * 10 8 6 14 14 C 1.46899 * 111.00077 * 75.00628 * 4 3 2 15 15 C 1.50703 * 109.47231 * 196.62403 * 14 4 3 16 16 C 1.38159 * 120.02632 * 254.50729 * 15 14 4 17 17 C 1.38245 * 120.05399 * 179.74593 * 16 15 14 18 18 C 1.38292 * 120.11281 * 0.55422 * 17 16 15 19 19 C 1.50697 * 119.97844 * 179.72091 * 18 17 16 20 20 C 1.38125 * 120.05206 * 359.70704 * 18 17 16 21 21 C 1.38712 * 120.02555 * 74.78917 * 15 14 4 22 22 O 1.35901 * 120.05759 * 359.95565 * 21 15 14 23 23 C 1.42902 * 116.99901 * 180.02562 * 22 21 15 24 24 H 1.08003 * 119.99318 * 0.02562 * 1 2 3 25 25 H 1.07997 * 120.00145 * 180.02562 * 1 2 3 26 26 H 1.07997 * 119.99832 * 179.97438 * 2 1 3 27 27 H 1.09002 * 109.47018 * 2.77569 * 3 2 1 28 28 H 1.09001 * 109.47199 * 242.78281 * 3 2 1 29 29 H 1.08995 * 109.47628 * 186.04541 * 5 4 3 30 30 H 1.09000 * 109.47245 * 306.04862 * 5 4 3 31 31 H 0.97006 * 120.00277 * 179.97438 * 9 8 6 32 32 H 1.09002 * 109.47289 * 316.62282 * 14 4 3 33 33 H 1.09006 * 109.47148 * 76.62114 * 14 4 3 34 34 H 1.07995 * 119.97811 * 0.02848 * 16 15 14 35 35 H 1.08007 * 119.94862 * 180.25982 * 17 16 15 36 36 H 1.08998 * 109.47374 * 269.98841 * 19 18 17 37 37 H 1.09005 * 109.46247 * 29.98017 * 19 18 17 38 38 H 1.08989 * 109.47468 * 149.98190 * 19 18 17 39 39 H 1.07995 * 120.02754 * 180.02562 * 20 18 17 40 40 H 1.09001 * 109.46629 * 179.97438 * 23 22 21 41 41 H 1.09003 * 109.46540 * 299.99495 * 23 22 21 42 42 H 1.08998 * 109.47124 * 59.99614 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9578 1.3542 1.1644 5 6 3.3627 2.7352 1.4593 6 6 2.1589 3.5287 1.8980 7 1 1.1900 3.0546 1.9519 8 6 2.2944 4.8601 2.2296 9 7 3.4741 5.4375 2.1636 10 14 0.8024 5.8435 2.7741 11 1 0.6574 5.7472 4.2488 12 1 0.9786 7.2660 2.3859 13 1 -0.4147 5.2991 2.1204 14 6 4.1310 0.4932 0.9639 15 6 4.8023 0.2421 2.2896 16 6 5.9888 0.8804 2.5956 17 6 6.6023 0.6544 3.8136 18 6 6.0365 -0.2193 4.7240 19 6 6.7112 -0.4682 6.0484 20 6 4.8532 -0.8640 4.4206 21 6 4.2324 -0.6345 3.2011 22 8 3.0679 -1.2673 2.9004 23 6 2.5388 -2.1555 3.8868 24 1 -0.5399 0.9354 -0.0004 25 1 -0.5400 -0.9353 0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3563 2.1330 0.0498 28 1 2.6523 1.3847 -0.9139 29 1 4.1067 2.7335 2.2559 30 1 3.7897 3.1877 0.5643 31 1 3.5694 6.3743 2.3965 32 1 3.8154 -0.4560 0.5309 33 1 4.8317 0.9852 0.2892 34 1 6.4350 1.5598 1.8846 35 1 7.5277 1.1575 4.0528 36 1 7.4035 -1.3045 5.9520 37 1 7.2595 0.4244 6.3500 38 1 5.9589 -0.7041 6.8008 39 1 4.4115 -1.5460 5.1320 40 1 1.6095 -2.5925 3.5211 41 1 3.2599 -2.9483 4.0860 42 1 2.3431 -1.6030 4.8058 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449336724.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:14 Heat of formation + Delta-G solvation = -10.296166 kcal Electronic energy + Delta-G solvation = -21698.080640 eV Core-core repulsion = 18643.160396 eV Total energy + Delta-G solvation = -3054.920244 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.16801 -38.77300 -38.21093 -34.95057 -34.64611 -33.13985 -30.98605 -29.86693 -28.68833 -28.11621 -26.20490 -25.14061 -23.10561 -22.56422 -21.62595 -20.41973 -18.53295 -18.29520 -17.27023 -16.90862 -16.60833 -16.49353 -16.07930 -15.57581 -15.36880 -15.14271 -14.68388 -14.46230 -14.39260 -14.02107 -13.64700 -13.44314 -13.26156 -13.03802 -12.92116 -12.71843 -12.68536 -12.47777 -12.40938 -12.14869 -11.99794 -11.76763 -11.67474 -11.44559 -11.21998 -10.59731 -10.19010 -9.59457 -8.93962 -8.86860 -8.18335 -6.27280 0.42104 0.61304 1.38370 1.40067 1.50802 1.53633 2.40139 2.55458 2.83246 3.13690 3.58427 3.86300 3.93165 4.12642 4.17264 4.29410 4.33411 4.42995 4.44897 4.47516 4.53605 4.62361 4.70002 4.78126 4.79564 4.87314 4.89170 4.94882 5.01049 5.07403 5.24787 5.30713 5.33011 5.45789 5.59426 5.67715 5.72574 5.81200 5.99736 6.06488 6.09875 6.42091 6.62776 6.70875 6.88794 7.41276 8.92499 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.012791 B = 0.006725 C = 0.005262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2188.564824 B = 4162.827753 C = 5319.789980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.134 4.134 3 C 0.084 3.916 4 N -0.524 5.524 5 C 0.213 3.787 6 C -0.519 4.519 7 H 0.058 0.942 8 C 0.003 3.997 9 N -0.932 5.932 10 Si 0.964 3.036 11 H -0.275 1.275 12 H -0.280 1.280 13 H -0.265 1.265 14 C 0.108 3.892 15 C -0.130 4.130 16 C -0.085 4.085 17 C -0.170 4.170 18 C -0.058 4.058 19 C -0.108 4.108 20 C -0.220 4.220 21 C 0.143 3.857 22 O -0.318 6.318 23 C 0.021 3.979 24 H 0.085 0.915 25 H 0.119 0.881 26 H 0.113 0.887 27 H 0.064 0.936 28 H 0.027 0.973 29 H 0.009 0.991 30 H -0.044 1.044 31 H 0.263 0.737 32 H 0.085 0.915 33 H 0.022 0.978 34 H 0.116 0.884 35 H 0.137 0.863 36 H 0.088 0.912 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.149 0.851 40 H 0.113 0.887 41 H 0.069 0.931 42 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.191 -16.123 3.983 16.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.153 4.153 3 C -0.043 4.043 4 N -0.247 5.247 5 C 0.086 3.914 6 C -0.557 4.557 7 H 0.076 0.924 8 C -0.195 4.195 9 N -0.573 5.573 10 Si 0.789 3.211 11 H -0.201 1.201 12 H -0.206 1.206 13 H -0.189 1.189 14 C -0.020 4.020 15 C -0.131 4.131 16 C -0.104 4.104 17 C -0.188 4.188 18 C -0.058 4.058 19 C -0.164 4.164 20 C -0.239 4.239 21 C 0.097 3.903 22 O -0.231 6.231 23 C -0.074 4.074 24 H 0.104 0.896 25 H 0.137 0.863 26 H 0.131 0.869 27 H 0.082 0.918 28 H 0.045 0.955 29 H 0.027 0.973 30 H -0.027 1.027 31 H 0.072 0.928 32 H 0.103 0.897 33 H 0.040 0.960 34 H 0.134 0.866 35 H 0.154 0.846 36 H 0.106 0.894 37 H 0.091 0.909 38 H 0.094 0.906 39 H 0.166 0.834 40 H 0.131 0.869 41 H 0.087 0.913 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.889 -16.125 4.229 16.777 hybrid contribution 0.048 1.339 -0.422 1.405 sum 1.937 -14.786 3.807 15.390 Atomic orbital electron populations 1.23849 0.95447 1.02081 1.01207 1.22778 0.96183 0.97141 0.99167 1.21149 0.95769 0.96708 0.90711 1.62059 1.15555 1.10062 1.37054 1.19346 0.95307 0.83735 0.92971 1.21427 0.95162 0.94846 1.44254 0.92427 1.25855 0.98983 0.98841 0.95788 1.70087 1.24631 1.12516 1.50041 0.85464 0.79482 0.77568 0.78614 1.20093 1.20552 1.18880 1.20793 0.91109 0.97352 0.92715 1.19230 0.96516 0.99788 0.97614 1.20997 0.94501 0.97202 0.97702 1.21095 1.02087 1.01630 0.94035 1.20057 0.94113 0.94569 0.97057 1.20821 1.00668 1.03147 0.91790 1.21312 0.98917 1.06547 0.97085 1.18859 0.85801 0.92376 0.93277 1.86151 1.35515 1.57119 1.44289 1.23254 1.00069 0.92123 0.91905 0.89635 0.86251 0.86900 0.91789 0.95481 0.97258 1.02674 0.92807 0.89695 0.95998 0.86616 0.84561 0.89364 0.90882 0.90629 0.83381 0.86881 0.91275 0.92944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.63 14.32 67.78 0.97 -4.66 16 2 C -0.13 -4.54 9.31 25.64 0.24 -4.30 16 3 C 0.08 3.52 5.25 85.56 0.45 3.97 16 4 N -0.52 -24.32 4.36 -909.94 -3.97 -28.29 16 5 C 0.21 11.92 4.56 85.56 0.39 12.31 16 6 C -0.52 -30.68 8.24 25.60 0.21 -30.47 16 7 H 0.06 3.39 7.30 -2.91 -0.02 3.37 16 8 C 0.00 0.19 5.46 84.66 0.46 0.65 16 9 N -0.93 -57.59 13.29 21.45 0.28 -57.30 16 10 Si 0.96 45.75 29.54 68.60 2.03 47.78 16 11 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 12 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 13 H -0.26 -12.05 7.11 99.48 0.71 -11.34 16 14 C 0.11 4.34 4.54 85.56 0.39 4.73 16 15 C -0.13 -5.09 4.71 -19.77 -0.09 -5.18 16 16 C -0.09 -3.18 8.95 22.25 0.20 -2.98 16 17 C -0.17 -5.41 9.70 22.28 0.22 -5.20 16 18 C -0.06 -1.63 5.88 -19.88 -0.12 -1.75 16 19 C -0.11 -2.09 10.01 71.24 0.71 -1.38 16 20 C -0.22 -6.52 8.69 22.37 0.19 -6.33 16 21 C 0.14 5.06 6.66 22.51 0.15 5.21 16 22 O -0.32 -10.50 9.83 -92.43 -0.91 -11.41 16 23 C 0.02 0.46 9.81 113.37 1.11 1.58 16 24 H 0.09 2.70 7.84 -2.91 -0.02 2.68 16 25 H 0.12 2.81 8.06 -2.91 -0.02 2.79 16 26 H 0.11 3.49 7.25 -2.91 -0.02 3.47 16 27 H 0.06 2.97 6.22 -2.39 -0.01 2.96 16 28 H 0.03 1.10 8.01 -2.39 -0.02 1.08 16 29 H 0.01 0.57 6.72 -2.39 -0.02 0.55 16 30 H -0.04 -2.70 8.12 -2.39 -0.02 -2.72 16 31 H 0.26 15.27 8.31 -92.70 -0.77 14.50 16 32 H 0.08 3.08 6.67 -2.39 -0.02 3.07 16 33 H 0.02 0.89 7.85 -2.38 -0.02 0.87 16 34 H 0.12 4.31 8.00 -2.91 -0.02 4.28 16 35 H 0.14 3.66 8.06 -2.91 -0.02 3.64 16 36 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.07 1.34 8.09 -2.38 -0.02 1.32 16 38 H 0.07 1.29 8.08 -2.39 -0.02 1.27 16 39 H 0.15 3.43 6.30 -2.91 -0.02 3.41 16 40 H 0.11 2.01 8.14 -2.39 -0.02 2.00 16 41 H 0.07 1.20 7.66 -2.39 -0.02 1.18 16 42 H 0.05 1.14 7.66 -2.39 -0.02 1.12 16 Total: -1.00 -70.27 346.92 3.90 -66.37 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: 0.98 Total: 16.66 kcal Atomic # 6 Polarization: -39.30 SS G_CDS: 5.49 Total: -33.81 kcal Atomic # 7 Polarization: -81.91 SS G_CDS: -3.68 Total: -85.59 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: -0.91 Total: -11.41 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.78 kcal Total: -70.27 3.90 -66.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449336724.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.077 kcal (2) G-P(sol) polarization free energy of solvation -70.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds