Wall clock time and date at job start Mon Mar 30 2020 02:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47271 * 2 1 4 4 C 1.52992 * 109.46880 * 59.99883 * 3 2 1 5 5 C 1.53001 * 109.46762 * 300.00057 * 3 2 1 6 6 C 1.53001 * 109.47059 * 180.02562 * 3 2 1 7 7 C 1.50700 * 109.46619 * 180.02562 * 6 3 2 8 8 O 1.21276 * 120.00598 * 359.97438 * 7 6 3 9 9 N 1.34777 * 119.99550 * 179.97438 * 7 6 3 10 10 C 1.39933 * 120.00165 * 174.88834 * 9 7 6 11 11 C 1.39291 * 119.95021 * 145.77660 * 10 9 7 12 12 C 1.38489 * 120.43276 * 179.97438 * 11 10 9 13 13 C 1.37688 * 120.31571 * 359.97438 * 12 11 10 14 14 C 1.40733 * 119.88978 * 0.02562 * 13 12 11 15 15 C 1.41406 * 120.21514 * 179.97438 * 14 13 12 16 16 H 1.08002 * 120.00730 * 205.17802 * 15 14 13 17 17 C 1.39933 * 119.99929 * 25.17233 * 15 14 13 18 18 N 1.30836 * 119.99792 * 16.80043 * 17 15 14 19 19 Si 1.86799 * 120.00348 * 196.79875 * 17 15 14 20 20 H 1.48494 * 109.47136 * 90.00101 * 19 17 15 21 21 H 1.48506 * 109.47082 * 210.00446 * 19 17 15 22 22 H 1.48504 * 109.46909 * 329.99948 * 19 17 15 23 23 C 1.38242 * 119.94592 * 325.51070 * 10 9 7 24 24 H 1.09000 * 109.47068 * 60.00083 * 1 2 3 25 25 H 1.08997 * 109.46931 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47373 * 300.00043 * 1 2 3 27 27 H 1.09001 * 109.47373 * 239.99957 * 2 1 3 28 28 H 1.09000 * 109.47068 * 119.99917 * 2 1 3 29 29 H 1.09009 * 109.47033 * 180.02562 * 4 3 2 30 30 H 1.09000 * 109.47512 * 300.00231 * 4 3 2 31 31 H 1.09000 * 109.47241 * 60.00216 * 4 3 2 32 32 H 1.09001 * 109.47095 * 299.99561 * 5 3 2 33 33 H 1.08996 * 109.47233 * 59.99647 * 5 3 2 34 34 H 1.09000 * 109.46594 * 180.02562 * 5 3 2 35 35 H 1.09000 * 109.46946 * 299.99712 * 6 3 2 36 36 H 1.08991 * 109.47172 * 59.99742 * 6 3 2 37 37 H 0.97002 * 120.00257 * 354.88288 * 9 7 6 38 38 H 1.08001 * 119.78695 * 359.97438 * 11 10 9 39 39 H 1.07994 * 119.84116 * 180.02562 * 12 11 10 40 40 H 1.08008 * 120.05718 * 179.97438 * 13 12 11 41 41 H 0.97004 * 119.99868 * 180.02562 * 18 17 15 42 42 H 1.07997 * 120.16380 * 359.97438 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5300 2.1637 1.2492 5 6 1.5300 2.1637 -1.2493 6 6 3.5700 1.4425 -0.0006 7 6 4.0723 2.8633 0.0000 8 8 3.2843 3.7851 0.0004 9 7 5.3974 3.1095 0.0001 10 6 5.8648 4.4241 -0.1073 11 6 7.0265 4.8058 0.5598 12 6 7.4983 6.1040 0.4600 13 6 6.8236 7.0322 -0.3009 14 6 5.6484 6.6611 -0.9805 15 6 4.9497 7.6089 -1.7635 16 1 3.8923 7.4853 -1.9450 17 6 5.6284 8.7072 -2.3032 18 7 6.9349 8.6990 -2.3731 19 14 4.6692 10.1851 -2.9239 20 1 4.4867 11.1574 -1.8165 21 1 5.4177 10.8313 -4.0318 22 1 3.3406 9.7412 -3.4170 23 6 5.1759 5.3406 -0.8797 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.8930 3.1916 1.2490 30 1 0.4400 2.1637 1.2492 31 1 1.8933 1.6499 2.1392 32 1 1.8934 1.6499 -2.1392 33 1 0.4400 2.1637 -1.2493 34 1 1.8937 3.1912 -1.2495 35 1 3.9337 0.9285 0.8891 36 1 3.9330 0.9288 -0.8908 37 1 6.0271 2.3755 0.0747 38 1 7.5628 4.0847 1.1587 39 1 8.4002 6.3895 0.9809 40 1 7.1951 8.0436 -0.3754 41 1 7.4053 9.4605 -2.7468 42 1 4.2776 5.0444 -1.4011 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000456726662.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:12 Heat of formation + Delta-G solvation = -36.108030 kcal Electronic energy + Delta-G solvation = -21293.683877 eV Core-core repulsion = 18237.644346 eV Total energy + Delta-G solvation = -3056.039530 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.10576 -37.88596 -36.57352 -34.38530 -33.01227 -30.92253 -29.79745 -28.79916 -27.07466 -27.02193 -25.26449 -23.97980 -21.52546 -20.81373 -19.52262 -18.56840 -17.56644 -16.60295 -15.60940 -15.23654 -14.97876 -14.75740 -14.72162 -14.49484 -14.06064 -13.42125 -13.05694 -12.91368 -12.73873 -12.21311 -12.18810 -11.80982 -11.70547 -11.64130 -11.42034 -11.12231 -11.03038 -10.96840 -10.82985 -10.69534 -10.47256 -10.44094 -10.42952 -10.01240 -9.58632 -9.25846 -9.00846 -8.76461 -7.42712 -6.88132 -6.68859 -4.31706 2.64212 2.86385 3.10799 3.15603 3.22355 3.42228 3.70865 3.98424 4.66936 4.72215 4.83740 4.85570 5.22608 5.23772 5.43540 5.53799 5.60278 5.69106 5.70033 5.75814 5.89823 5.98919 6.01239 6.05215 6.20825 6.25774 6.27269 6.36959 6.41603 6.67083 6.70521 6.92078 7.05374 7.09790 7.10773 7.28215 7.60514 7.76366 8.00603 8.11989 8.22580 8.30849 8.66696 8.81145 8.96877 9.01611 10.23868 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.022144 B = 0.004357 C = 0.003780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.140583 B = 6424.532715 C = 7405.101756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.113 4.113 3 C -0.045 4.045 4 C -0.156 4.156 5 C -0.156 4.156 6 C -0.132 4.132 7 C 0.504 3.496 8 O -0.508 6.508 9 N -0.672 5.672 10 C 0.152 3.848 11 C -0.263 4.263 12 C -0.093 4.093 13 C -0.173 4.173 14 C 0.120 3.880 15 C -0.459 4.459 16 H 0.078 0.922 17 C 0.076 3.924 18 N -0.796 5.796 19 Si 0.908 3.092 20 H -0.268 1.268 21 H -0.278 1.278 22 H -0.262 1.262 23 C -0.209 4.209 24 H 0.058 0.942 25 H 0.048 0.952 26 H 0.057 0.943 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.087 0.913 30 H 0.051 0.949 31 H 0.042 0.958 32 H 0.043 0.957 33 H 0.051 0.949 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.397 0.603 38 H 0.088 0.912 39 H 0.090 0.910 40 H 0.118 0.882 41 H 0.279 0.721 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.736 -13.408 3.307 14.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.151 4.151 3 C -0.045 4.045 4 C -0.212 4.212 5 C -0.213 4.213 6 C -0.172 4.172 7 C 0.292 3.708 8 O -0.384 6.384 9 N -0.315 5.315 10 C 0.060 3.940 11 C -0.284 4.284 12 C -0.112 4.112 13 C -0.193 4.193 14 C 0.117 3.883 15 C -0.489 4.489 16 H 0.096 0.904 17 C -0.141 4.141 18 N -0.422 5.422 19 Si 0.733 3.267 20 H -0.193 1.193 21 H -0.204 1.204 22 H -0.186 1.186 23 C -0.231 4.231 24 H 0.077 0.923 25 H 0.067 0.933 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.105 0.895 30 H 0.070 0.930 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.106 0.894 35 H 0.106 0.894 36 H 0.108 0.892 37 H 0.230 0.770 38 H 0.106 0.894 39 H 0.109 0.891 40 H 0.136 0.864 41 H 0.090 0.910 42 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -6.142 -12.638 3.190 14.409 hybrid contribution 0.168 0.148 -0.272 0.352 sum -5.974 -12.489 2.919 14.149 Atomic orbital electron populations 1.21870 0.95904 1.01043 1.02352 1.21587 0.96146 0.95877 1.01479 1.20249 0.92160 0.94841 0.97246 1.22160 1.00626 1.03065 0.95386 1.22168 1.00606 1.03162 0.95387 1.21779 0.97271 0.94398 1.03785 1.20619 0.82208 0.91477 0.76534 1.90615 1.54254 1.46289 1.47214 1.43566 1.07001 1.08161 1.72808 1.17445 0.95619 0.83001 0.97909 1.20048 1.01148 0.97251 1.09969 1.20461 0.98349 0.93210 0.99157 1.21344 0.98697 0.99290 0.99928 1.17489 0.91119 0.90416 0.89288 1.19588 0.96740 1.05090 1.27437 0.90379 1.25896 0.94827 0.99270 0.94132 1.69834 1.08333 1.29929 1.34073 0.86314 0.80649 0.80985 0.78788 1.19282 1.20372 1.18599 1.20960 1.03524 0.93398 1.05199 0.92323 0.93283 0.92376 0.92212 0.92273 0.89458 0.92952 0.93859 0.93749 0.92955 0.89369 0.89422 0.89224 0.76977 0.89418 0.89135 0.86372 0.90982 0.87629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.21 37.16 0.34 -1.06 16 2 C -0.11 -1.09 4.99 -26.73 -0.13 -1.22 16 3 C -0.04 -0.54 0.54 -154.51 -0.08 -0.62 16 4 C -0.16 -2.04 7.82 37.15 0.29 -1.75 16 5 C -0.16 -2.12 7.82 37.16 0.29 -1.83 16 6 C -0.13 -1.59 4.77 -27.88 -0.13 -1.72 16 7 C 0.50 8.58 6.97 -10.99 -0.08 8.50 16 8 O -0.51 -10.53 9.10 5.56 0.05 -10.48 16 9 N -0.67 -11.82 5.34 -9.91 -0.05 -11.88 16 10 C 0.15 3.44 6.25 -83.77 -0.52 2.92 16 11 C -0.26 -5.84 9.97 -39.10 -0.39 -6.23 16 12 C -0.09 -2.19 10.02 -39.69 -0.40 -2.59 16 13 C -0.17 -4.58 8.69 -38.84 -0.34 -4.92 16 14 C 0.12 3.31 5.57 -106.85 -0.59 2.72 16 15 C -0.46 -12.67 9.05 -37.74 -0.34 -13.01 16 16 H 0.08 2.13 7.90 -52.49 -0.41 1.71 16 17 C 0.08 1.95 5.16 -17.34 -0.09 1.87 16 18 N -0.80 -20.89 10.94 55.55 0.61 -20.28 16 19 Si 0.91 19.23 29.59 -169.99 -5.03 14.20 16 20 H -0.27 -5.60 7.11 56.52 0.40 -5.19 16 21 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 22 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16 23 C -0.21 -5.42 8.39 -38.68 -0.32 -5.74 16 24 H 0.06 0.55 6.43 -51.93 -0.33 0.22 16 25 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 26 H 0.06 0.54 6.43 -51.93 -0.33 0.20 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.09 1.44 5.51 -51.92 -0.29 1.16 16 30 H 0.05 0.63 6.43 -51.93 -0.33 0.30 16 31 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.05 0.65 6.43 -51.93 -0.33 0.31 16 34 H 0.09 1.51 5.51 -51.93 -0.29 1.22 16 35 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.40 5.43 8.82 -40.82 -0.36 5.07 16 38 H 0.09 1.69 8.06 -52.49 -0.42 1.26 16 39 H 0.09 1.89 8.06 -52.49 -0.42 1.47 16 40 H 0.12 3.21 6.17 -52.48 -0.32 2.89 16 41 H 0.28 6.65 8.30 -40.82 -0.34 6.32 16 42 H 0.11 2.79 6.48 -52.49 -0.34 2.45 16 LS Contribution 329.02 15.07 4.96 4.96 Total: -1.00 -29.61 329.02 -8.25 -37.87 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: -6.29 Total: 10.29 kcal Atomic # 6 Polarization: -22.18 SS G_CDS: -2.50 Total: -24.69 kcal Atomic # 7 Polarization: -32.71 SS G_CDS: 0.55 Total: -32.16 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: 0.05 Total: -10.48 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -5.03 Total: 14.20 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -29.61 -8.25 -37.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456726662.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.761 kcal (2) G-P(sol) polarization free energy of solvation -29.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds