Wall clock time and date at job start Mon Mar 30 2020 02:43:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47271 * 2 1 4 4 C 1.52992 * 109.46880 * 59.99883 * 3 2 1 5 5 C 1.53001 * 109.46762 * 300.00057 * 3 2 1 6 6 C 1.53001 * 109.47059 * 180.02562 * 3 2 1 7 7 C 1.50700 * 109.46619 * 180.02562 * 6 3 2 8 8 O 1.21276 * 120.00598 * 359.97438 * 7 6 3 9 9 N 1.34777 * 119.99550 * 179.97438 * 7 6 3 10 10 C 1.39933 * 120.00165 * 174.88834 * 9 7 6 11 11 C 1.39291 * 119.95021 * 145.77660 * 10 9 7 12 12 C 1.38489 * 120.43276 * 179.97438 * 11 10 9 13 13 C 1.37688 * 120.31571 * 359.97438 * 12 11 10 14 14 C 1.40733 * 119.88978 * 0.02562 * 13 12 11 15 15 C 1.41406 * 120.21514 * 179.97438 * 14 13 12 16 16 H 1.08002 * 120.00730 * 205.17802 * 15 14 13 17 17 C 1.39933 * 119.99929 * 25.17233 * 15 14 13 18 18 N 1.30836 * 119.99792 * 16.80043 * 17 15 14 19 19 Si 1.86799 * 120.00348 * 196.79875 * 17 15 14 20 20 H 1.48494 * 109.47136 * 90.00101 * 19 17 15 21 21 H 1.48506 * 109.47082 * 210.00446 * 19 17 15 22 22 H 1.48504 * 109.46909 * 329.99948 * 19 17 15 23 23 C 1.38242 * 119.94592 * 325.51070 * 10 9 7 24 24 H 1.09000 * 109.47068 * 60.00083 * 1 2 3 25 25 H 1.08997 * 109.46931 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47373 * 300.00043 * 1 2 3 27 27 H 1.09001 * 109.47373 * 239.99957 * 2 1 3 28 28 H 1.09000 * 109.47068 * 119.99917 * 2 1 3 29 29 H 1.09009 * 109.47033 * 180.02562 * 4 3 2 30 30 H 1.09000 * 109.47512 * 300.00231 * 4 3 2 31 31 H 1.09000 * 109.47241 * 60.00216 * 4 3 2 32 32 H 1.09001 * 109.47095 * 299.99561 * 5 3 2 33 33 H 1.08996 * 109.47233 * 59.99647 * 5 3 2 34 34 H 1.09000 * 109.46594 * 180.02562 * 5 3 2 35 35 H 1.09000 * 109.46946 * 299.99712 * 6 3 2 36 36 H 1.08991 * 109.47172 * 59.99742 * 6 3 2 37 37 H 0.97002 * 120.00257 * 354.88288 * 9 7 6 38 38 H 1.08001 * 119.78695 * 359.97438 * 11 10 9 39 39 H 1.07994 * 119.84116 * 180.02562 * 12 11 10 40 40 H 1.08008 * 120.05718 * 179.97438 * 13 12 11 41 41 H 0.97004 * 119.99868 * 180.02562 * 18 17 15 42 42 H 1.07997 * 120.16380 * 359.97438 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5300 2.1637 1.2492 5 6 1.5300 2.1637 -1.2493 6 6 3.5700 1.4425 -0.0006 7 6 4.0723 2.8633 0.0000 8 8 3.2843 3.7851 0.0004 9 7 5.3974 3.1095 0.0001 10 6 5.8648 4.4241 -0.1073 11 6 7.0265 4.8058 0.5598 12 6 7.4983 6.1040 0.4600 13 6 6.8236 7.0322 -0.3009 14 6 5.6484 6.6611 -0.9805 15 6 4.9497 7.6089 -1.7635 16 1 3.8923 7.4853 -1.9450 17 6 5.6284 8.7072 -2.3032 18 7 6.9349 8.6990 -2.3731 19 14 4.6692 10.1851 -2.9239 20 1 4.4867 11.1574 -1.8165 21 1 5.4177 10.8313 -4.0318 22 1 3.3406 9.7412 -3.4170 23 6 5.1759 5.3406 -0.8797 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.8930 3.1916 1.2490 30 1 0.4400 2.1637 1.2492 31 1 1.8933 1.6499 2.1392 32 1 1.8934 1.6499 -2.1392 33 1 0.4400 2.1637 -1.2493 34 1 1.8937 3.1912 -1.2495 35 1 3.9337 0.9285 0.8891 36 1 3.9330 0.9288 -0.8908 37 1 6.0271 2.3755 0.0747 38 1 7.5628 4.0847 1.1587 39 1 8.4002 6.3895 0.9809 40 1 7.1951 8.0436 -0.3754 41 1 7.4053 9.4605 -2.7468 42 1 4.2776 5.0444 -1.4011 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000456726662.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:11 Heat of formation + Delta-G solvation = -52.568070 kcal Electronic energy + Delta-G solvation = -21294.397637 eV Core-core repulsion = 18237.644346 eV Total energy + Delta-G solvation = -3056.753291 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.47877 -39.42269 -37.94345 -36.10323 -34.80061 -31.87762 -31.74127 -30.26034 -28.37382 -28.13602 -27.23159 -24.91734 -23.17093 -22.65768 -21.07819 -19.74725 -19.20207 -17.95564 -17.41511 -16.81896 -16.50668 -16.28858 -15.80503 -15.61492 -15.36262 -14.99503 -14.66517 -14.29253 -14.02890 -13.78861 -13.53144 -13.11667 -13.04820 -12.93304 -12.80075 -12.71996 -12.62957 -12.27048 -12.18579 -11.93514 -11.88823 -11.68122 -11.46415 -11.36448 -11.29191 -11.09758 -10.74381 -10.25798 -9.39286 -8.73012 -8.59120 -6.37592 0.89809 1.01196 1.34992 1.47985 1.48509 1.90134 2.19861 2.35158 2.73632 3.69925 3.75830 3.85415 3.95688 4.25174 4.44842 4.47348 4.51505 4.63434 4.67163 4.69890 4.79050 4.89389 4.94076 5.05000 5.09128 5.12021 5.12508 5.17287 5.20040 5.27264 5.28147 5.29602 5.34833 5.49950 5.62719 5.71507 5.83042 5.88671 6.08340 6.12348 6.36662 6.68880 6.74684 6.94064 7.02011 7.47077 8.32756 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.022144 B = 0.004357 C = 0.003780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.140583 B = 6424.532715 C = 7405.101756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.106 4.106 3 C -0.044 4.044 4 C -0.152 4.152 5 C -0.154 4.154 6 C -0.121 4.121 7 C 0.496 3.504 8 O -0.549 6.549 9 N -0.665 5.665 10 C 0.161 3.839 11 C -0.254 4.254 12 C -0.092 4.092 13 C -0.201 4.201 14 C 0.090 3.910 15 C -0.504 4.504 16 H 0.062 0.938 17 C 0.039 3.961 18 N -0.823 5.823 19 Si 0.981 3.019 20 H -0.260 1.260 21 H -0.261 1.261 22 H -0.265 1.265 23 C -0.236 4.236 24 H 0.050 0.950 25 H 0.064 0.936 26 H 0.053 0.947 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.047 0.953 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.053 0.947 33 H 0.057 0.943 34 H 0.045 0.955 35 H 0.122 0.878 36 H 0.115 0.885 37 H 0.419 0.581 38 H 0.130 0.870 39 H 0.121 0.879 40 H 0.103 0.897 41 H 0.289 0.711 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.255 -15.902 4.085 17.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.143 4.143 3 C -0.044 4.044 4 C -0.210 4.210 5 C -0.211 4.211 6 C -0.161 4.161 7 C 0.286 3.714 8 O -0.426 6.426 9 N -0.311 5.311 10 C 0.067 3.933 11 C -0.275 4.275 12 C -0.111 4.111 13 C -0.221 4.221 14 C 0.087 3.913 15 C -0.533 4.533 16 H 0.080 0.920 17 C -0.176 4.176 18 N -0.449 5.449 19 Si 0.801 3.199 20 H -0.185 1.185 21 H -0.185 1.185 22 H -0.189 1.189 23 C -0.257 4.257 24 H 0.069 0.931 25 H 0.083 0.917 26 H 0.072 0.928 27 H 0.091 0.909 28 H 0.095 0.905 29 H 0.066 0.934 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.064 0.936 35 H 0.140 0.860 36 H 0.133 0.867 37 H 0.257 0.743 38 H 0.148 0.852 39 H 0.139 0.861 40 H 0.121 0.879 41 H 0.100 0.900 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -5.641 -15.186 3.979 16.682 hybrid contribution 0.014 0.800 -0.445 0.915 sum -5.627 -14.387 3.534 15.847 Atomic orbital electron populations 1.21881 0.95785 1.01909 1.01777 1.21535 0.96215 0.93614 1.02947 1.20280 0.92307 0.96355 0.95491 1.22090 1.01009 1.01013 0.96839 1.22107 1.01023 1.00992 0.97009 1.21854 0.96972 0.90704 1.06560 1.21680 0.81429 0.93372 0.74937 1.90645 1.55229 1.48295 1.48453 1.43537 1.08028 1.06780 1.72737 1.17530 0.95024 0.84743 0.95981 1.20487 1.00592 0.97427 1.08976 1.20833 0.98842 0.93357 0.98066 1.21299 0.99377 0.99518 1.01907 1.17826 0.92119 0.91336 0.90041 1.19739 0.96343 1.07457 1.29798 0.92009 1.26681 0.95786 1.01400 0.93748 1.69865 1.09564 1.31046 1.34402 0.85240 0.78924 0.77023 0.78704 1.18487 1.18517 1.18906 1.20926 1.03736 0.94012 1.07052 0.93121 0.91685 0.92821 0.90944 0.90532 0.93449 0.92445 0.92256 0.92815 0.92380 0.93595 0.86030 0.86660 0.74296 0.85188 0.86099 0.87928 0.90029 0.89688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.43 9.21 71.98 0.66 -1.77 16 2 C -0.11 -1.64 4.99 30.59 0.15 -1.48 16 3 C -0.04 -0.97 0.54 -52.18 -0.03 -1.00 16 4 C -0.15 -3.87 7.82 71.98 0.56 -3.31 16 5 C -0.15 -4.17 7.82 71.98 0.56 -3.61 16 6 C -0.12 -2.55 4.77 29.85 0.14 -2.41 16 7 C 0.50 16.51 6.97 87.66 0.61 17.12 16 8 O -0.55 -23.71 9.10 -3.02 -0.03 -23.74 16 9 N -0.66 -22.31 5.34 -303.66 -1.62 -23.93 16 10 C 0.16 7.23 6.25 38.10 0.24 7.47 16 11 C -0.25 -10.76 9.97 22.58 0.23 -10.54 16 12 C -0.09 -4.29 10.02 22.20 0.22 -4.06 16 13 C -0.20 -11.02 8.69 22.75 0.20 -10.82 16 14 C 0.09 5.22 5.57 -21.31 -0.12 5.10 16 15 C -0.50 -29.65 9.05 23.46 0.21 -29.44 16 16 H 0.06 3.66 7.90 -2.91 -0.02 3.64 16 17 C 0.04 2.06 5.16 85.25 0.44 2.50 16 18 N -0.82 -44.54 10.94 21.82 0.24 -44.30 16 19 Si 0.98 40.66 29.59 68.60 2.03 42.69 16 20 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 21 H -0.26 -10.00 7.11 99.48 0.71 -9.30 16 22 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 23 C -0.24 -12.78 8.39 22.85 0.19 -12.59 16 24 H 0.05 0.86 6.43 -2.39 -0.02 0.84 16 25 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.05 0.88 6.43 -2.39 -0.02 0.86 16 27 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.05 1.61 5.51 -2.38 -0.01 1.60 16 30 H 0.06 1.35 6.43 -2.39 -0.02 1.34 16 31 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.06 1.45 6.43 -2.39 -0.02 1.43 16 34 H 0.05 1.66 5.51 -2.39 -0.01 1.64 16 35 H 0.12 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.12 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.42 10.06 8.82 -92.71 -0.82 9.25 16 38 H 0.13 4.41 8.06 -2.91 -0.02 4.39 16 39 H 0.12 4.79 8.06 -2.91 -0.02 4.77 16 40 H 0.10 5.83 6.17 -2.91 -0.02 5.81 16 41 H 0.29 14.01 8.30 -92.71 -0.77 13.24 16 42 H 0.08 4.85 6.48 -2.91 -0.02 4.83 16 Total: -1.00 -69.90 329.02 5.10 -64.80 By element: Atomic # 1 Polarization: 33.12 SS G_CDS: 0.20 Total: 33.32 kcal Atomic # 6 Polarization: -53.11 SS G_CDS: 4.27 Total: -48.83 kcal Atomic # 7 Polarization: -66.85 SS G_CDS: -1.38 Total: -68.24 kcal Atomic # 8 Polarization: -23.71 SS G_CDS: -0.03 Total: -23.74 kcal Atomic # 14 Polarization: 40.66 SS G_CDS: 2.03 Total: 42.69 kcal Total: -69.90 5.10 -64.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456726662.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.232 kcal (2) G-P(sol) polarization free energy of solvation -69.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds