Wall clock time and date at job start Mon Mar 30 2020 02:43:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.47074 * 2 1 4 4 C 1.52997 * 109.46915 * 64.99650 * 3 2 1 5 5 C 1.52999 * 109.47482 * 57.33610 * 4 3 2 6 6 C 1.53002 * 109.46832 * 184.99559 * 3 2 1 7 7 C 1.50703 * 109.46659 * 173.85755 * 6 3 2 8 8 O 1.21286 * 120.00220 * 353.38147 * 7 6 3 9 9 N 1.34775 * 120.00005 * 173.38940 * 7 6 3 10 10 C 1.39935 * 120.00203 * 184.54713 * 9 7 6 11 11 C 1.39290 * 119.94714 * 144.89467 * 10 9 7 12 12 C 1.38492 * 120.42996 * 180.02562 * 11 10 9 13 13 C 1.37685 * 120.31642 * 359.97438 * 12 11 10 14 14 C 1.40734 * 119.89049 * 0.02562 * 13 12 11 15 15 C 1.41411 * 120.21262 * 179.97438 * 14 13 12 16 16 H 1.08002 * 119.99890 * 205.88484 * 15 14 13 17 17 C 1.39926 * 119.99944 * 25.88267 * 15 14 13 18 18 N 1.30832 * 120.00032 * 15.13631 * 17 15 14 19 19 Si 1.86801 * 120.00139 * 195.13811 * 17 15 14 20 20 H 1.48493 * 109.47383 * 94.97665 * 19 17 15 21 21 H 1.48500 * 109.46798 * 214.98011 * 19 17 15 22 22 H 1.48507 * 109.46949 * 334.97713 * 19 17 15 23 23 C 1.38239 * 119.94717 * 324.62491 * 10 9 7 24 24 H 1.08998 * 109.46979 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47449 * 300.00661 * 1 2 3 26 26 H 1.09001 * 109.46957 * 60.00009 * 1 2 3 27 27 H 1.08995 * 109.47589 * 240.00264 * 2 1 3 28 28 H 1.09000 * 109.47079 * 119.99216 * 2 1 3 29 29 H 1.09001 * 109.46849 * 304.99584 * 3 2 1 30 30 H 1.09003 * 109.46826 * 177.32966 * 4 3 2 31 31 H 1.08997 * 109.47399 * 297.32883 * 4 3 2 32 32 H 1.08996 * 109.47289 * 180.70150 * 5 4 3 33 33 H 1.09000 * 109.46836 * 300.69979 * 5 4 3 34 34 H 1.08999 * 109.47180 * 60.69634 * 5 4 3 35 35 H 1.08991 * 109.47232 * 293.85545 * 6 3 2 36 36 H 1.08994 * 109.46980 * 53.86255 * 6 3 2 37 37 H 0.97008 * 120.00019 * 4.54031 * 9 7 6 38 38 H 1.08002 * 119.78926 * 359.97438 * 11 10 9 39 39 H 1.07996 * 119.83964 * 180.02562 * 12 11 10 40 40 H 1.08004 * 120.05686 * 180.02562 * 13 12 11 41 41 H 0.96996 * 120.00125 * 180.02562 * 18 17 15 42 42 H 1.07997 * 120.15970 * 359.97438 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.6351 2.1266 1.3073 5 6 2.1897 1.3323 2.4916 6 6 3.5648 1.4443 -0.1256 7 6 4.0546 2.8615 -0.2773 8 8 3.2588 3.7678 -0.4049 9 7 5.3770 3.1217 -0.2713 10 6 5.8300 4.4449 -0.3163 11 6 6.9808 4.8099 0.3782 12 6 7.4378 6.1167 0.3410 13 6 6.7588 7.0701 -0.3841 14 6 5.5944 6.7160 -1.0909 15 6 4.8914 7.6897 -1.8374 16 1 3.8347 7.5676 -2.0246 17 6 5.5647 8.8115 -2.3336 18 7 6.8724 8.8255 -2.3722 19 14 4.5966 10.2891 -2.9410 20 1 4.4758 11.2856 -1.8468 21 1 5.3025 10.9032 -4.0942 22 1 3.2419 9.8529 -3.3651 23 6 5.1376 5.3866 -1.0546 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5137 0.8901 29 1 1.6054 1.9815 -0.8419 30 1 2.0389 3.1389 1.3279 31 1 0.5480 2.1676 1.3744 32 1 1.8907 1.8127 3.4232 33 1 1.7958 0.3164 2.4640 34 1 3.2776 1.3019 2.4312 35 1 4.0036 1.0021 0.7687 36 1 3.8580 0.8631 -0.9998 37 1 6.0148 2.3916 -0.2357 38 1 7.5200 4.0692 0.9501 39 1 8.3314 6.3892 0.8828 40 1 7.1191 8.0879 -0.4106 41 1 7.3392 9.6032 -2.7158 42 1 4.2479 5.1035 -1.5973 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000456754103.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:15 Heat of formation + Delta-G solvation = -60.393112 kcal Electronic energy + Delta-G solvation = -21066.660204 eV Core-core repulsion = 18009.567594 eV Total energy + Delta-G solvation = -3057.092610 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.35876 -39.28954 -37.88569 -36.12985 -34.80475 -32.09927 -31.74710 -31.36524 -29.49115 -27.26834 -26.00003 -24.38703 -23.17367 -22.65529 -21.15725 -19.91782 -19.39549 -17.99876 -17.37883 -17.07310 -16.66586 -16.45554 -16.24333 -15.51676 -15.25418 -14.74257 -14.66544 -14.35680 -14.01018 -13.72162 -13.51629 -13.50152 -13.07517 -12.94584 -12.83578 -12.78353 -12.72414 -12.29127 -12.18916 -11.98464 -11.92370 -11.54648 -11.38325 -11.27727 -11.18868 -11.14300 -10.81765 -10.42613 -9.39388 -8.75530 -8.59663 -6.38769 0.89150 1.00883 1.34463 1.46975 1.48590 1.85444 2.19790 2.33332 2.73334 3.68482 3.78603 3.85282 3.96615 4.21190 4.43273 4.45748 4.47453 4.59370 4.63167 4.64182 4.67419 4.80875 4.95995 4.99015 5.05932 5.11554 5.12288 5.13423 5.18228 5.26143 5.31933 5.34044 5.36320 5.42599 5.51357 5.70250 5.78346 5.88299 6.07330 6.12334 6.35353 6.67984 6.72345 6.93587 7.01129 7.42551 8.33337 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.022694 B = 0.004083 C = 0.003658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.501806 B = 6856.692573 C = 7652.390392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.114 4.114 3 C -0.072 4.072 4 C -0.125 4.125 5 C -0.151 4.151 6 C -0.126 4.126 7 C 0.496 3.504 8 O -0.565 6.565 9 N -0.662 5.662 10 C 0.155 3.845 11 C -0.250 4.250 12 C -0.093 4.093 13 C -0.199 4.199 14 C 0.087 3.913 15 C -0.504 4.504 16 H 0.060 0.940 17 C 0.037 3.963 18 N -0.825 5.825 19 Si 0.982 3.018 20 H -0.259 1.259 21 H -0.261 1.261 22 H -0.266 1.266 23 C -0.237 4.237 24 H 0.067 0.933 25 H 0.053 0.947 26 H 0.043 0.957 27 H 0.072 0.928 28 H 0.084 0.916 29 H 0.050 0.950 30 H 0.034 0.966 31 H 0.062 0.938 32 H 0.048 0.952 33 H 0.079 0.921 34 H 0.056 0.944 35 H 0.123 0.877 36 H 0.120 0.880 37 H 0.421 0.579 38 H 0.132 0.868 39 H 0.123 0.877 40 H 0.104 0.896 41 H 0.289 0.711 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.772 -16.827 5.619 18.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.151 4.151 3 C -0.091 4.091 4 C -0.163 4.163 5 C -0.207 4.207 6 C -0.165 4.165 7 C 0.285 3.715 8 O -0.443 6.443 9 N -0.308 5.308 10 C 0.062 3.938 11 C -0.271 4.271 12 C -0.112 4.112 13 C -0.219 4.219 14 C 0.085 3.915 15 C -0.534 4.534 16 H 0.079 0.921 17 C -0.177 4.177 18 N -0.451 5.451 19 Si 0.803 3.197 20 H -0.184 1.184 21 H -0.185 1.185 22 H -0.190 1.190 23 C -0.259 4.259 24 H 0.086 0.914 25 H 0.072 0.928 26 H 0.062 0.938 27 H 0.091 0.909 28 H 0.102 0.898 29 H 0.068 0.932 30 H 0.053 0.947 31 H 0.080 0.920 32 H 0.067 0.933 33 H 0.097 0.903 34 H 0.074 0.926 35 H 0.140 0.860 36 H 0.138 0.862 37 H 0.259 0.741 38 H 0.150 0.850 39 H 0.140 0.860 40 H 0.122 0.878 41 H 0.100 0.900 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -5.161 -16.115 5.461 17.780 hybrid contribution -0.049 0.937 -0.528 1.076 sum -5.210 -15.178 4.933 16.789 Atomic orbital electron populations 1.21811 0.95846 1.02033 1.01499 1.21606 0.96082 0.94062 1.03360 1.20925 0.92957 0.97428 0.97752 1.21571 1.00725 0.98799 0.95189 1.21882 1.01106 1.00911 0.96844 1.21886 0.97626 0.90439 1.06544 1.21793 0.81500 0.93216 0.74942 1.90719 1.55518 1.49114 1.48917 1.43473 1.08039 1.06357 1.72962 1.17576 0.95386 0.84377 0.96475 1.20501 1.00697 0.97166 1.08753 1.20848 0.98877 0.93134 0.98317 1.21330 0.99439 0.99347 1.01780 1.17862 0.92206 0.91491 0.89988 1.19750 0.96403 1.05567 1.31689 0.92134 1.26685 0.95855 1.01537 0.93627 1.69854 1.09507 1.30492 1.35239 0.85206 0.78845 0.76941 0.78751 1.18374 1.18481 1.19019 1.21109 1.04030 0.93611 1.07165 0.91396 0.92807 0.93816 0.90892 0.89761 0.93181 0.94738 0.91973 0.93328 0.90254 0.92550 0.85955 0.86199 0.74144 0.84989 0.85953 0.87781 0.90047 0.89375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.38 9.67 71.98 0.70 -1.69 16 2 C -0.11 -1.72 5.13 30.60 0.16 -1.56 16 3 C -0.07 -1.61 1.80 -10.79 -0.02 -1.63 16 4 C -0.13 -3.13 5.19 30.59 0.16 -2.97 16 5 C -0.15 -2.82 9.22 71.98 0.66 -2.16 16 6 C -0.13 -2.65 5.02 29.85 0.15 -2.50 16 7 C 0.50 17.01 7.24 87.66 0.63 17.64 16 8 O -0.56 -25.77 11.77 -3.05 -0.04 -25.81 16 9 N -0.66 -22.57 5.33 -303.65 -1.62 -24.19 16 10 C 0.16 7.08 6.29 38.10 0.24 7.32 16 11 C -0.25 -10.63 9.97 22.58 0.23 -10.40 16 12 C -0.09 -4.33 10.02 22.20 0.22 -4.11 16 13 C -0.20 -10.97 8.68 22.75 0.20 -10.77 16 14 C 0.09 5.15 5.57 -21.31 -0.12 5.03 16 15 C -0.50 -30.06 9.06 23.46 0.21 -29.85 16 16 H 0.06 3.65 7.89 -2.91 -0.02 3.62 16 17 C 0.04 2.01 5.19 85.25 0.44 2.45 16 18 N -0.82 -44.95 10.89 21.82 0.24 -44.72 16 19 Si 0.98 41.04 29.59 68.60 2.03 43.07 16 20 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 21 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 22 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 23 C -0.24 -13.14 8.43 22.85 0.19 -12.95 16 24 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 25 H 0.05 0.86 6.62 -2.39 -0.02 0.85 16 26 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.08 1.00 6.09 -2.39 -0.01 0.99 16 29 H 0.05 1.43 7.82 -2.39 -0.02 1.41 16 30 H 0.03 1.17 6.25 -2.39 -0.01 1.15 16 31 H 0.06 1.48 6.69 -2.39 -0.02 1.47 16 32 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.08 1.11 6.23 -2.39 -0.01 1.10 16 34 H 0.06 1.02 6.40 -2.39 -0.02 1.00 16 35 H 0.12 1.88 6.22 -2.39 -0.01 1.87 16 36 H 0.12 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.42 10.15 8.82 -92.70 -0.82 9.33 16 38 H 0.13 4.44 8.06 -2.91 -0.02 4.42 16 39 H 0.12 4.83 8.06 -2.91 -0.02 4.81 16 40 H 0.10 5.94 6.15 -2.91 -0.02 5.93 16 41 H 0.29 14.08 8.30 -92.71 -0.77 13.31 16 42 H 0.09 5.18 6.24 -2.91 -0.02 5.16 16 Total: -1.00 -72.48 331.91 4.87 -67.61 By element: Atomic # 1 Polarization: 31.97 SS G_CDS: 0.21 Total: 32.18 kcal Atomic # 6 Polarization: -52.20 SS G_CDS: 4.05 Total: -48.14 kcal Atomic # 7 Polarization: -67.53 SS G_CDS: -1.38 Total: -68.91 kcal Atomic # 8 Polarization: -25.77 SS G_CDS: -0.04 Total: -25.81 kcal Atomic # 14 Polarization: 41.04 SS G_CDS: 2.03 Total: 43.07 kcal Total: -72.48 4.87 -67.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456754103.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.220 kcal (2) G-P(sol) polarization free energy of solvation -72.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds