Wall clock time and date at job start Mon Mar 30 2020 02:43:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47189 * 2 1 4 4 C 1.52997 * 109.46952 * 120.00314 * 2 1 3 5 5 C 1.53003 * 109.47206 * 60.00317 * 4 2 1 6 6 C 1.53001 * 109.47251 * 299.99793 * 4 2 1 7 7 C 1.50699 * 109.47202 * 179.97438 * 4 2 1 8 8 O 1.21290 * 119.99975 * 0.02562 * 7 4 2 9 9 N 1.34777 * 120.00316 * 179.97438 * 7 4 2 10 10 C 1.39936 * 120.00306 * 184.70156 * 9 7 4 11 11 C 1.39291 * 119.94493 * 324.32265 * 10 9 7 12 12 C 1.38492 * 120.42969 * 179.97438 * 11 10 9 13 13 C 1.37689 * 120.31723 * 0.27942 * 12 11 10 14 14 C 1.40736 * 119.88521 * 359.45166 * 13 12 11 15 15 C 1.41409 * 120.21091 * 180.27734 * 14 13 12 16 16 H 1.08005 * 119.99887 * 331.96047 * 15 14 13 17 17 C 1.39928 * 120.00459 * 151.95523 * 15 14 13 18 18 N 1.30829 * 120.00403 * 161.35351 * 17 15 14 19 19 Si 1.86807 * 119.99814 * 341.35397 * 17 15 14 20 20 H 1.48495 * 109.47003 * 90.52840 * 19 17 15 21 21 H 1.48494 * 109.46902 * 210.52697 * 19 17 15 22 22 H 1.48497 * 109.46994 * 330.53023 * 19 17 15 23 23 C 1.38240 * 119.94799 * 144.29610 * 10 9 7 24 24 H 1.08994 * 109.47519 * 299.99927 * 1 2 3 25 25 H 1.09008 * 109.46870 * 60.00105 * 1 2 3 26 26 H 1.09006 * 109.47070 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46923 * 240.00231 * 2 1 3 28 28 H 1.09002 * 109.47000 * 60.00278 * 3 2 1 29 29 H 1.09002 * 109.47137 * 179.97438 * 3 2 1 30 30 H 1.08994 * 109.47453 * 300.00220 * 3 2 1 31 31 H 1.08998 * 109.46922 * 180.02562 * 5 4 2 32 32 H 1.09002 * 109.46855 * 299.99865 * 5 4 2 33 33 H 1.08994 * 109.47171 * 59.99668 * 5 4 2 34 34 H 1.08998 * 109.47204 * 300.00263 * 6 4 2 35 35 H 1.09002 * 109.46874 * 60.00096 * 6 4 2 36 36 H 1.08994 * 109.47077 * 180.02562 * 6 4 2 37 37 H 0.96996 * 119.99710 * 4.69852 * 9 7 4 38 38 H 1.08001 * 119.78586 * 0.02562 * 11 10 9 39 39 H 1.07997 * 119.84205 * 179.97438 * 12 11 10 40 40 H 1.08002 * 120.05129 * 179.69947 * 13 12 11 41 41 H 0.96995 * 120.00066 * 179.97438 * 18 17 15 42 42 H 1.07992 * 120.16118 * 0.02562 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.5300 -2.1638 1.2491 6 6 1.5300 -0.0001 2.4985 7 6 3.5469 -0.7219 1.2489 8 8 4.1534 -0.1966 0.3393 9 7 4.2208 -1.3052 2.2599 10 6 5.6167 -1.2207 2.3111 11 6 6.3586 -1.2479 1.1325 12 6 7.7404 -1.1644 1.1713 13 6 8.3967 -1.0593 2.3772 14 6 7.6600 -1.0248 3.5758 15 6 8.3267 -0.9111 4.8177 16 1 9.3319 -1.2906 4.9278 17 6 7.6842 -0.3068 5.9040 18 7 8.1203 -0.5140 7.1200 19 14 6.2036 0.7959 5.6180 20 1 4.9628 -0.0181 5.6701 21 1 6.1544 1.8414 6.6714 22 1 6.3169 1.4409 4.2852 23 6 6.2571 -1.1098 3.5311 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8899 31 1 1.8929 -2.6775 2.1393 32 1 0.4400 -2.1638 1.2490 33 1 1.8933 -2.6776 0.3591 34 1 1.8933 1.0275 2.4985 35 1 0.4400 -0.0001 2.4985 36 1 1.8937 -0.5137 3.3884 37 1 3.7382 -1.7835 2.9521 38 1 5.8528 -1.3339 0.1820 39 1 8.3063 -1.1869 0.2517 40 1 9.4748 -0.9994 2.4028 41 1 7.6751 -0.0948 7.8729 42 1 5.6828 -1.0886 4.4454 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000456763731.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:20 Heat of formation + Delta-G solvation = -33.191578 kcal Electronic energy + Delta-G solvation = -21898.860899 eV Core-core repulsion = 18842.947836 eV Total energy + Delta-G solvation = -3055.913063 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.55044 -38.03701 -36.47524 -34.46997 -33.38737 -31.49966 -30.31539 -28.45893 -27.94994 -26.78655 -25.14458 -24.03271 -21.89715 -21.59310 -19.82843 -18.68839 -17.47583 -16.94594 -15.93382 -15.66347 -14.94398 -14.92260 -14.48815 -14.40961 -14.19153 -13.57250 -13.21244 -12.97541 -12.89501 -12.47174 -12.30756 -12.16832 -12.07685 -11.96769 -11.76504 -11.43756 -11.36714 -11.11211 -10.80082 -10.74518 -10.57691 -10.51763 -10.46195 -10.14832 -9.86299 -9.35896 -9.11868 -8.91067 -7.62031 -7.17380 -6.95504 -4.49101 2.37332 2.67939 3.00802 3.09228 3.23662 3.32670 3.54061 3.96919 4.49515 4.52071 4.68917 4.73380 5.09080 5.17002 5.23975 5.39179 5.44318 5.47029 5.63148 5.65941 5.69322 5.80849 5.84333 5.87527 5.95484 6.04347 6.10419 6.17632 6.36437 6.39855 6.48376 6.58582 6.62714 6.76476 6.82570 7.12059 7.45026 7.47154 7.74834 7.80714 8.02060 8.15629 8.34504 8.56880 8.70970 8.80767 10.07169 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.022289 B = 0.005627 C = 0.004975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.951267 B = 4975.123586 C = 5627.107003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.068 4.068 3 C -0.163 4.163 4 C -0.078 4.078 5 C -0.143 4.143 6 C -0.147 4.147 7 C 0.517 3.483 8 O -0.516 6.516 9 N -0.669 5.669 10 C 0.171 3.829 11 C -0.230 4.230 12 C -0.076 4.076 13 C -0.214 4.214 14 C 0.105 3.895 15 C -0.449 4.449 16 H 0.091 0.909 17 C 0.086 3.914 18 N -0.810 5.810 19 Si 0.914 3.086 20 H -0.272 1.272 21 H -0.293 1.293 22 H -0.247 1.247 23 C -0.267 4.267 24 H 0.057 0.943 25 H 0.054 0.946 26 H 0.056 0.944 27 H 0.075 0.925 28 H 0.049 0.951 29 H 0.085 0.915 30 H 0.048 0.952 31 H 0.060 0.940 32 H 0.070 0.930 33 H 0.061 0.939 34 H 0.065 0.935 35 H 0.070 0.930 36 H 0.059 0.941 37 H 0.400 0.600 38 H 0.112 0.888 39 H 0.097 0.903 40 H 0.101 0.899 41 H 0.284 0.716 42 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.259 -0.224 -7.748 17.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.087 4.087 3 C -0.220 4.220 4 C -0.081 4.081 5 C -0.201 4.201 6 C -0.204 4.204 7 C 0.304 3.696 8 O -0.392 6.392 9 N -0.313 5.313 10 C 0.079 3.921 11 C -0.251 4.251 12 C -0.094 4.094 13 C -0.234 4.234 14 C 0.102 3.898 15 C -0.478 4.478 16 H 0.109 0.891 17 C -0.133 4.133 18 N -0.434 5.434 19 Si 0.741 3.259 20 H -0.199 1.199 21 H -0.220 1.220 22 H -0.171 1.171 23 C -0.288 4.288 24 H 0.076 0.924 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.093 0.907 28 H 0.068 0.932 29 H 0.104 0.896 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.078 0.922 37 H 0.235 0.765 38 H 0.130 0.870 39 H 0.115 0.885 40 H 0.119 0.881 41 H 0.095 0.905 42 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -14.818 0.198 -8.110 16.893 hybrid contribution -0.852 0.228 0.559 1.044 sum -15.670 0.426 -7.551 17.400 Atomic orbital electron populations 1.21987 0.95239 1.01675 1.01832 1.20858 0.94877 0.96804 0.96156 1.22147 1.04290 0.94816 1.00698 1.20835 0.91597 0.97604 0.98086 1.21929 1.01853 0.93742 1.02558 1.21989 1.01744 1.01090 0.95591 1.20545 0.89445 0.77718 0.81868 1.90621 1.69794 1.43812 1.34948 1.43568 1.06427 1.54086 1.27183 1.17500 0.80253 0.99723 0.94586 1.20476 0.93380 1.15076 0.96191 1.20571 0.93709 0.98542 0.96628 1.21057 0.98401 1.11965 0.91956 1.17486 0.90431 0.88675 0.93228 1.19455 1.02632 1.33615 0.92080 0.89056 1.26120 0.97535 0.95510 0.94119 1.69701 1.38931 1.35231 0.99542 0.86336 0.80596 0.79547 0.79408 1.19861 1.22049 1.17080 1.20855 0.95435 1.17762 0.94748 0.92388 0.92669 0.92497 0.90688 0.93239 0.89646 0.93278 0.92140 0.91111 0.91971 0.91614 0.91110 0.92203 0.76495 0.87047 0.88470 0.88123 0.90524 0.87738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 8.49 37.16 0.32 -1.01 16 2 C -0.07 -0.80 1.92 -90.62 -0.17 -0.97 16 3 C -0.16 -2.11 8.52 37.16 0.32 -1.79 16 4 C -0.08 -0.95 0.43 -155.66 -0.07 -1.02 16 5 C -0.14 -1.43 8.01 37.16 0.30 -1.13 16 6 C -0.15 -1.63 7.67 37.16 0.29 -1.34 16 7 C 0.52 8.76 6.03 -10.99 -0.07 8.69 16 8 O -0.52 -10.36 11.12 5.55 0.06 -10.30 16 9 N -0.67 -12.02 5.11 -9.91 -0.05 -12.08 16 10 C 0.17 3.81 6.28 -83.77 -0.53 3.28 16 11 C -0.23 -5.19 8.70 -39.10 -0.34 -5.53 16 12 C -0.08 -1.68 10.02 -39.69 -0.40 -2.07 16 13 C -0.21 -5.10 9.79 -38.84 -0.38 -5.48 16 14 C 0.11 2.70 5.14 -106.85 -0.55 2.15 16 15 C -0.45 -12.20 9.57 -37.74 -0.36 -12.56 16 16 H 0.09 2.58 8.06 -52.48 -0.42 2.16 16 17 C 0.09 2.25 5.41 -17.35 -0.09 2.16 16 18 N -0.81 -21.56 13.93 55.55 0.77 -20.78 16 19 Si 0.91 21.16 24.55 -169.99 -4.17 16.99 16 20 H -0.27 -5.96 6.44 56.52 0.36 -5.60 16 21 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.25 -6.06 7.04 56.52 0.40 -5.66 16 23 C -0.27 -6.43 7.21 -38.68 -0.28 -6.71 16 24 H 0.06 0.48 6.43 -51.93 -0.33 0.15 16 25 H 0.05 0.46 8.14 -51.92 -0.42 0.04 16 26 H 0.06 0.44 6.43 -51.93 -0.33 0.11 16 27 H 0.07 0.96 8.10 -51.93 -0.42 0.54 16 28 H 0.05 0.60 6.43 -51.93 -0.33 0.26 16 29 H 0.08 1.39 5.51 -51.93 -0.29 1.11 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.57 7.47 -51.93 -0.39 0.18 16 32 H 0.07 0.56 6.43 -51.93 -0.33 0.23 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.06 0.80 6.43 -51.93 -0.33 0.47 16 35 H 0.07 0.62 6.43 -51.93 -0.33 0.29 16 36 H 0.06 0.65 7.67 -51.93 -0.40 0.25 16 37 H 0.40 6.04 7.68 -40.82 -0.31 5.73 16 38 H 0.11 2.48 6.25 -52.49 -0.33 2.15 16 39 H 0.10 1.87 8.06 -52.49 -0.42 1.45 16 40 H 0.10 2.25 8.06 -52.49 -0.42 1.83 16 41 H 0.28 6.86 8.30 -40.82 -0.34 6.52 16 42 H 0.11 2.48 4.42 -52.49 -0.23 2.25 16 LS Contribution 321.04 15.07 4.84 4.84 Total: -1.00 -29.34 321.04 -6.65 -35.99 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: -6.08 Total: 8.68 kcal Atomic # 6 Polarization: -21.32 SS G_CDS: -2.02 Total: -23.34 kcal Atomic # 7 Polarization: -33.58 SS G_CDS: 0.72 Total: -32.86 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: 0.06 Total: -10.30 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.17 Total: 16.99 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -29.34 -6.65 -35.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456763731.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.800 kcal (2) G-P(sol) polarization free energy of solvation -29.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds