Wall clock time and date at job start Mon Mar 30 2020 02:30:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17409 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47085 * 89.04382 * 3 2 1 5 5 C 1.37101 * 119.99692 * 83.55156 * 4 3 2 6 6 H 1.07996 * 120.00347 * 172.83169 * 5 4 3 7 7 C 1.38953 * 120.00014 * 352.83701 * 5 4 3 8 8 N 1.31412 * 120.00189 * 13.92516 * 7 5 4 9 9 Si 1.86802 * 120.00060 * 193.93176 * 7 5 4 10 10 H 1.48500 * 109.47048 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47445 * 119.99409 * 9 7 5 12 12 H 1.48496 * 109.46978 * 240.00039 * 9 7 5 13 13 C 1.34774 * 120.00453 * 263.55126 * 4 3 2 14 14 O 1.21292 * 119.99974 * 174.35393 * 13 4 3 15 15 C 1.50701 * 120.00070 * 354.63354 * 13 4 3 16 16 C 1.53001 * 109.46822 * 295.40488 * 15 13 4 17 17 C 1.50698 * 109.46719 * 298.48827 * 16 15 13 18 18 C 1.30999 * 119.99956 * 116.31723 * 17 16 15 19 19 C 1.52989 * 109.47298 * 175.39974 * 15 13 4 20 20 C 1.53001 * 109.47604 * 300.00036 * 19 15 13 21 21 C 1.53007 * 109.46907 * 300.00079 * 20 19 15 22 22 C 1.52996 * 109.46850 * 59.99748 * 21 20 19 23 23 C 1.53001 * 109.47571 * 299.99845 * 22 21 20 24 24 H 4.40643 * 5.51313 * 180.02562 * 4 1 2 25 25 H 1.09003 * 109.46950 * 329.04519 * 3 2 1 26 26 H 1.08996 * 109.46940 * 209.04870 * 3 2 1 27 27 H 0.96999 * 120.00329 * 180.02562 * 8 7 5 28 28 H 1.09002 * 109.47774 * 58.48885 * 16 15 13 29 29 H 1.09006 * 109.47095 * 178.48987 * 16 15 13 30 30 H 1.08002 * 120.00302 * 296.30789 * 17 16 15 31 31 H 1.08002 * 120.00209 * 179.97438 * 18 17 16 32 32 H 1.07998 * 120.00120 * 359.97438 * 18 17 16 33 33 H 1.08999 * 109.47354 * 60.00416 * 19 15 13 34 34 H 1.09001 * 109.47359 * 179.97438 * 19 15 13 35 35 H 1.08994 * 109.47497 * 180.02562 * 20 19 15 36 36 H 1.09001 * 109.46842 * 59.99586 * 20 19 15 37 37 H 1.08992 * 109.46974 * 299.99735 * 21 20 19 38 38 H 1.08999 * 109.46811 * 179.97438 * 21 20 19 39 39 H 1.09007 * 109.46953 * 180.02562 * 22 21 20 40 40 H 1.09001 * 109.47595 * 60.00067 * 22 21 20 41 41 H 1.09001 * 109.46842 * 300.00683 * 23 22 21 42 42 H 1.08994 * 109.47497 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1344 -0.0222 -1.3810 5 6 3.2366 1.1460 -2.0913 6 1 3.7034 1.1469 -3.0652 7 6 2.7397 2.3291 -1.5581 8 7 2.4244 2.3942 -0.2840 9 14 2.5196 3.8269 -2.6525 10 1 2.9448 3.4957 -4.0362 11 1 1.0907 4.2313 -2.6567 12 1 3.3489 4.9445 -2.1345 13 6 3.4832 -1.1915 -1.9533 14 8 3.7894 -1.2250 -3.1264 15 6 3.4865 -2.4584 -1.1372 16 6 4.5475 -2.3552 -0.0397 17 6 5.9075 -2.1962 -0.6693 18 6 6.5960 -1.0992 -0.4727 19 6 3.8050 -3.6485 -2.0443 20 6 2.7439 -3.7517 -3.1418 21 6 1.3677 -3.9508 -2.5035 22 6 1.0492 -2.7606 -1.5964 23 6 2.1103 -2.6574 -0.4989 24 1 -1.0500 0.0002 0.0000 25 1 3.0098 -0.8805 0.5286 26 1 3.0089 0.8992 0.4990 27 1 2.0772 3.2200 0.0881 28 1 4.3357 -1.4915 0.5906 29 1 4.5317 -3.2605 0.5672 30 1 6.3145 -2.9866 -1.2824 31 1 7.5708 -0.9854 -0.9235 32 1 6.1889 -0.3087 0.1402 33 1 4.7854 -3.5067 -2.4990 34 1 3.8078 -4.5648 -1.4540 35 1 2.9706 -4.5998 -3.7878 36 1 2.7415 -2.8353 -3.7321 37 1 1.3701 -4.8671 -1.9133 38 1 0.6118 -4.0239 -3.2854 39 1 0.0690 -2.9027 -1.1413 40 1 1.0468 -1.8443 -2.1867 41 1 2.1127 -3.5738 0.0913 42 1 1.8832 -1.8098 0.1475 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491765122.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:01 Heat of formation + Delta-G solvation = 65.176564 kcal Electronic energy + Delta-G solvation = -23382.963873 eV Core-core repulsion = 20331.316372 eV Total energy + Delta-G solvation = -3051.647501 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.37424 -36.61823 -35.33588 -34.54705 -32.31371 -31.29864 -30.56079 -29.90356 -26.56137 -25.63954 -24.84833 -22.32686 -21.71358 -20.27006 -19.19803 -18.18081 -17.80803 -16.64003 -15.59294 -15.21792 -14.91099 -14.29482 -14.27229 -13.83666 -13.63192 -13.45878 -13.06405 -12.95316 -12.66894 -12.18676 -11.86168 -11.60913 -11.52178 -11.20501 -11.10021 -10.96972 -10.85639 -10.61346 -10.49768 -10.36872 -10.22318 -10.03489 -9.61364 -9.44688 -9.23671 -9.20379 -8.82033 -8.79228 -8.18560 -7.83855 -6.10933 -3.81289 2.79241 3.15845 3.27390 3.33895 3.70046 3.90425 4.05572 4.19321 4.90107 5.05843 5.10251 5.29943 5.32621 5.48471 5.50028 5.59644 5.68604 5.78569 5.83155 5.97217 6.01116 6.03369 6.06610 6.14828 6.19213 6.32591 6.38529 6.41091 6.48654 6.55655 6.68851 6.80608 6.83015 6.89352 7.01343 7.09993 7.14403 7.26905 7.29682 7.67029 8.10073 8.56653 8.75224 9.20914 9.46820 10.00110 10.69318 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.017139 B = 0.008449 C = 0.007399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.307692 B = 3313.251421 C = 3783.230867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.281 4.281 2 C -0.104 4.104 3 C 0.174 3.826 4 N -0.442 5.442 5 C -0.293 4.293 6 H 0.104 0.896 7 C 0.029 3.971 8 N -0.882 5.882 9 Si 0.923 3.077 10 H -0.270 1.270 11 H -0.282 1.282 12 H -0.283 1.283 13 C 0.476 3.524 14 O -0.580 6.580 15 C -0.064 4.064 16 C -0.092 4.092 17 C -0.150 4.150 18 C -0.184 4.184 19 C -0.084 4.084 20 C -0.130 4.130 21 C -0.115 4.115 22 C -0.113 4.113 23 C -0.136 4.136 24 H 0.198 0.802 25 H 0.073 0.927 26 H 0.164 0.836 27 H 0.265 0.735 28 H 0.081 0.919 29 H 0.070 0.930 30 H 0.104 0.896 31 H 0.090 0.910 32 H 0.098 0.902 33 H 0.065 0.935 34 H 0.052 0.948 35 H 0.047 0.953 36 H 0.093 0.907 37 H 0.051 0.949 38 H 0.051 0.949 39 H 0.054 0.946 40 H 0.067 0.933 41 H 0.057 0.943 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.522 -8.759 3.622 9.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.299 4.299 2 C -0.106 4.106 3 C 0.052 3.948 4 N -0.159 5.159 5 C -0.421 4.421 6 H 0.122 0.878 7 C -0.171 4.171 8 N -0.524 5.524 9 Si 0.751 3.249 10 H -0.194 1.194 11 H -0.208 1.208 12 H -0.209 1.209 13 C 0.264 3.736 14 O -0.464 6.464 15 C -0.067 4.067 16 C -0.129 4.129 17 C -0.168 4.168 18 C -0.221 4.221 19 C -0.122 4.122 20 C -0.168 4.168 21 C -0.153 4.153 22 C -0.151 4.151 23 C -0.173 4.173 24 H 0.215 0.785 25 H 0.091 0.909 26 H 0.180 0.820 27 H 0.077 0.923 28 H 0.099 0.901 29 H 0.089 0.911 30 H 0.122 0.878 31 H 0.109 0.891 32 H 0.116 0.884 33 H 0.084 0.916 34 H 0.071 0.929 35 H 0.066 0.934 36 H 0.112 0.888 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.073 0.927 40 H 0.086 0.914 41 H 0.075 0.925 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 0.635 -8.584 3.135 9.160 hybrid contribution -0.593 0.828 -0.441 1.110 sum 0.042 -7.755 2.694 8.210 Atomic orbital electron populations 1.24347 0.95483 1.07441 1.02674 1.23522 0.94690 0.94529 0.97827 1.20020 0.83871 1.04958 0.85940 1.43578 1.55706 1.05561 1.11069 1.19769 1.36008 0.84195 1.02113 0.87849 1.25152 0.96662 0.99194 0.96087 1.69566 1.44915 1.27259 1.10664 0.85895 0.77959 0.80750 0.80334 1.19414 1.20786 1.20917 1.19672 0.82505 0.83825 0.87564 1.90441 1.53816 1.85569 1.16592 1.20655 0.95133 0.95406 0.95541 1.21061 0.92273 1.02611 0.96930 1.22752 0.95643 0.98816 0.99611 1.23777 0.99744 0.97212 1.01326 1.21263 0.99436 0.95309 0.96162 1.21738 0.93798 1.03049 0.98169 1.21527 0.97428 0.97826 0.98483 1.21446 0.97588 0.98946 0.97075 1.22288 0.93406 1.02996 0.98621 0.78518 0.90935 0.81992 0.92307 0.90056 0.91123 0.87848 0.89142 0.88396 0.91646 0.92926 0.93400 0.88843 0.93054 0.92974 0.92732 0.91404 0.92465 0.88512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.28 -5.67 19.11 29.55 0.56 -5.10 16 2 C -0.10 -2.28 9.03 -37.12 -0.34 -2.61 16 3 C 0.17 3.82 4.27 -6.83 -0.03 3.79 16 4 N -0.44 -10.73 2.60 -117.94 -0.31 -11.04 16 5 C -0.29 -7.91 9.47 -14.93 -0.14 -8.05 16 6 H 0.10 2.97 7.25 -52.49 -0.38 2.59 16 7 C 0.03 0.75 5.28 -17.47 -0.09 0.66 16 8 N -0.88 -22.28 8.61 55.50 0.48 -21.80 16 9 Si 0.92 20.91 29.58 -169.99 -5.03 15.88 16 10 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 12 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 13 C 0.48 10.96 4.16 -10.99 -0.05 10.92 16 14 O -0.58 -15.26 13.44 5.55 0.07 -15.18 16 15 C -0.06 -1.16 0.28 -155.66 -0.04 -1.21 16 16 C -0.09 -1.48 4.47 -27.88 -0.12 -1.60 16 17 C -0.15 -2.46 7.99 -36.03 -0.29 -2.75 16 18 C -0.18 -3.04 14.32 29.01 0.42 -2.63 16 19 C -0.08 -1.42 4.07 -26.74 -0.11 -1.53 16 20 C -0.13 -2.27 5.63 -26.73 -0.15 -2.42 16 21 C -0.12 -1.82 5.92 -26.73 -0.16 -1.98 16 22 C -0.11 -1.99 5.00 -26.73 -0.13 -2.13 16 23 C -0.14 -2.33 4.06 -26.73 -0.11 -2.44 16 24 H 0.20 3.27 7.80 -54.09 -0.42 2.85 16 25 H 0.07 1.39 2.75 -51.93 -0.14 1.25 16 26 H 0.16 3.88 5.30 -53.19 -0.28 3.60 16 27 H 0.27 6.48 8.31 -40.82 -0.34 6.14 16 28 H 0.08 1.36 4.86 -51.93 -0.25 1.11 16 29 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 30 H 0.10 1.58 7.13 -52.49 -0.37 1.21 16 31 H 0.09 1.35 8.06 -52.49 -0.42 0.93 16 32 H 0.10 1.69 7.84 -52.49 -0.41 1.28 16 33 H 0.06 1.16 6.56 -51.93 -0.34 0.82 16 34 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.09 1.98 5.67 -51.93 -0.29 1.69 16 37 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.05 0.88 8.14 -51.92 -0.42 0.46 16 40 H 0.07 1.45 7.12 -51.93 -0.37 1.08 16 41 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.10 1.75 2.59 -51.93 -0.13 1.62 16 LS Contribution 316.86 15.07 4.77 4.77 Total: -1.00 -28.55 316.86 -6.71 -35.26 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: -5.92 Total: 11.18 kcal Atomic # 6 Polarization: -18.30 SS G_CDS: -0.78 Total: -19.08 kcal Atomic # 7 Polarization: -33.01 SS G_CDS: 0.17 Total: -32.84 kcal Atomic # 8 Polarization: -15.26 SS G_CDS: 0.07 Total: -15.18 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.03 Total: 15.88 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -28.55 -6.71 -35.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491765122.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.434 kcal (2) G-P(sol) polarization free energy of solvation -28.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds