Wall clock time and date at job start Mon Mar 30 2020 02:30:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17409 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47085 * 89.04382 * 3 2 1 5 5 C 1.37101 * 119.99692 * 83.55156 * 4 3 2 6 6 H 1.07996 * 120.00347 * 172.83169 * 5 4 3 7 7 C 1.38953 * 120.00014 * 352.83701 * 5 4 3 8 8 N 1.31412 * 120.00189 * 13.92516 * 7 5 4 9 9 Si 1.86802 * 120.00060 * 193.93176 * 7 5 4 10 10 H 1.48500 * 109.47048 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47445 * 119.99409 * 9 7 5 12 12 H 1.48496 * 109.46978 * 240.00039 * 9 7 5 13 13 C 1.34774 * 120.00453 * 263.55126 * 4 3 2 14 14 O 1.21292 * 119.99974 * 174.35393 * 13 4 3 15 15 C 1.50701 * 120.00070 * 354.63354 * 13 4 3 16 16 C 1.53001 * 109.46822 * 295.40488 * 15 13 4 17 17 C 1.50698 * 109.46719 * 298.48827 * 16 15 13 18 18 C 1.30999 * 119.99956 * 116.31723 * 17 16 15 19 19 C 1.52989 * 109.47298 * 175.39974 * 15 13 4 20 20 C 1.53001 * 109.47604 * 300.00036 * 19 15 13 21 21 C 1.53007 * 109.46907 * 300.00079 * 20 19 15 22 22 C 1.52996 * 109.46850 * 59.99748 * 21 20 19 23 23 C 1.53001 * 109.47571 * 299.99845 * 22 21 20 24 24 H 4.40643 * 5.51313 * 180.02562 * 4 1 2 25 25 H 1.09003 * 109.46950 * 329.04519 * 3 2 1 26 26 H 1.08996 * 109.46940 * 209.04870 * 3 2 1 27 27 H 0.96999 * 120.00329 * 180.02562 * 8 7 5 28 28 H 1.09002 * 109.47774 * 58.48885 * 16 15 13 29 29 H 1.09006 * 109.47095 * 178.48987 * 16 15 13 30 30 H 1.08002 * 120.00302 * 296.30789 * 17 16 15 31 31 H 1.08002 * 120.00209 * 179.97438 * 18 17 16 32 32 H 1.07998 * 120.00120 * 359.97438 * 18 17 16 33 33 H 1.08999 * 109.47354 * 60.00416 * 19 15 13 34 34 H 1.09001 * 109.47359 * 179.97438 * 19 15 13 35 35 H 1.08994 * 109.47497 * 180.02562 * 20 19 15 36 36 H 1.09001 * 109.46842 * 59.99586 * 20 19 15 37 37 H 1.08992 * 109.46974 * 299.99735 * 21 20 19 38 38 H 1.08999 * 109.46811 * 179.97438 * 21 20 19 39 39 H 1.09007 * 109.46953 * 180.02562 * 22 21 20 40 40 H 1.09001 * 109.47595 * 60.00067 * 22 21 20 41 41 H 1.09001 * 109.46842 * 300.00683 * 23 22 21 42 42 H 1.08994 * 109.47497 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1344 -0.0222 -1.3810 5 6 3.2366 1.1460 -2.0913 6 1 3.7034 1.1469 -3.0652 7 6 2.7397 2.3291 -1.5581 8 7 2.4244 2.3942 -0.2840 9 14 2.5196 3.8269 -2.6525 10 1 2.9448 3.4957 -4.0362 11 1 1.0907 4.2313 -2.6567 12 1 3.3489 4.9445 -2.1345 13 6 3.4832 -1.1915 -1.9533 14 8 3.7894 -1.2250 -3.1264 15 6 3.4865 -2.4584 -1.1372 16 6 4.5475 -2.3552 -0.0397 17 6 5.9075 -2.1962 -0.6693 18 6 6.5960 -1.0992 -0.4727 19 6 3.8050 -3.6485 -2.0443 20 6 2.7439 -3.7517 -3.1418 21 6 1.3677 -3.9508 -2.5035 22 6 1.0492 -2.7606 -1.5964 23 6 2.1103 -2.6574 -0.4989 24 1 -1.0500 0.0002 0.0000 25 1 3.0098 -0.8805 0.5286 26 1 3.0089 0.8992 0.4990 27 1 2.0772 3.2200 0.0881 28 1 4.3357 -1.4915 0.5906 29 1 4.5317 -3.2605 0.5672 30 1 6.3145 -2.9866 -1.2824 31 1 7.5708 -0.9854 -0.9235 32 1 6.1889 -0.3087 0.1402 33 1 4.7854 -3.5067 -2.4990 34 1 3.8078 -4.5648 -1.4540 35 1 2.9706 -4.5998 -3.7878 36 1 2.7415 -2.8353 -3.7321 37 1 1.3701 -4.8671 -1.9133 38 1 0.6118 -4.0239 -3.2854 39 1 0.0690 -2.9027 -1.1413 40 1 1.0468 -1.8443 -2.1867 41 1 2.1127 -3.5738 0.0913 42 1 1.8832 -1.8098 0.1475 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491765122.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:00 Heat of formation + Delta-G solvation = 50.724144 kcal Electronic energy + Delta-G solvation = -23383.590577 eV Core-core repulsion = 20331.316372 eV Total energy + Delta-G solvation = -3052.274205 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.94345 -38.23880 -37.17124 -35.86930 -34.10467 -33.03696 -32.00904 -31.30055 -28.33186 -26.93236 -26.69357 -23.74167 -23.25434 -21.71627 -20.52413 -19.80075 -19.59438 -18.37394 -17.31682 -16.67252 -16.43781 -16.02714 -15.89680 -15.40381 -15.13655 -14.91087 -14.57330 -14.43207 -14.31532 -13.70128 -13.33373 -13.22330 -12.95903 -12.87869 -12.70941 -12.53827 -12.36604 -12.23985 -12.11873 -11.93555 -11.75993 -11.46298 -11.23577 -10.96443 -10.90532 -10.62268 -10.51059 -10.19446 -9.95428 -9.71882 -8.04285 -5.83872 1.32063 1.38355 1.48264 1.50038 2.00283 2.16692 2.34519 2.38428 3.16422 3.29761 3.69091 3.85203 3.92970 4.01478 4.17373 4.18627 4.34890 4.40168 4.49338 4.60112 4.66766 4.69092 4.74616 4.79708 4.89463 5.00575 5.04486 5.09834 5.15185 5.18921 5.34129 5.37072 5.41793 5.46904 5.49704 5.54634 5.63573 5.75707 5.81328 5.97589 6.17275 6.63741 7.11430 7.26142 7.60668 8.15931 8.69867 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.017139 B = 0.008449 C = 0.007399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.307692 B = 3313.251421 C = 3783.230867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.265 4.265 2 C -0.141 4.141 3 C 0.180 3.820 4 N -0.452 5.452 5 C -0.328 4.328 6 H 0.070 0.930 7 C 0.004 3.996 8 N -0.881 5.881 9 Si 0.973 3.027 10 H -0.282 1.282 11 H -0.277 1.277 12 H -0.270 1.270 13 C 0.472 3.528 14 O -0.624 6.624 15 C -0.058 4.058 16 C -0.091 4.091 17 C -0.152 4.152 18 C -0.199 4.199 19 C -0.083 4.083 20 C -0.132 4.132 21 C -0.109 4.109 22 C -0.110 4.110 23 C -0.135 4.135 24 H 0.230 0.770 25 H 0.102 0.898 26 H 0.141 0.859 27 H 0.268 0.732 28 H 0.071 0.929 29 H 0.111 0.889 30 H 0.117 0.883 31 H 0.102 0.898 32 H 0.084 0.916 33 H 0.051 0.949 34 H 0.093 0.907 35 H 0.067 0.933 36 H 0.044 0.956 37 H 0.085 0.915 38 H 0.055 0.945 39 H 0.070 0.930 40 H 0.017 0.983 41 H 0.097 0.903 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.402 -10.817 5.180 12.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.284 4.284 2 C -0.143 4.143 3 C 0.059 3.941 4 N -0.170 5.170 5 C -0.456 4.456 6 H 0.088 0.912 7 C -0.196 4.196 8 N -0.523 5.523 9 Si 0.799 3.201 10 H -0.207 1.207 11 H -0.203 1.203 12 H -0.195 1.195 13 C 0.262 3.738 14 O -0.511 6.511 15 C -0.061 4.061 16 C -0.128 4.128 17 C -0.170 4.170 18 C -0.236 4.236 19 C -0.120 4.120 20 C -0.169 4.169 21 C -0.146 4.146 22 C -0.148 4.148 23 C -0.172 4.172 24 H 0.247 0.753 25 H 0.119 0.881 26 H 0.157 0.843 27 H 0.079 0.921 28 H 0.090 0.910 29 H 0.130 0.870 30 H 0.135 0.865 31 H 0.120 0.880 32 H 0.102 0.898 33 H 0.069 0.931 34 H 0.111 0.889 35 H 0.086 0.914 36 H 0.063 0.937 37 H 0.104 0.896 38 H 0.074 0.926 39 H 0.089 0.911 40 H 0.036 0.964 41 H 0.115 0.885 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.294 -10.637 4.733 11.646 hybrid contribution -0.329 1.474 -0.970 1.794 sum -0.623 -9.163 3.764 9.926 Atomic orbital electron populations 1.25146 0.96373 1.05863 1.00988 1.23692 0.95202 0.95999 0.99362 1.19918 0.84358 1.05245 0.84599 1.43702 1.56141 1.05243 1.11902 1.19560 1.37996 0.86255 1.01751 0.91241 1.25689 0.96058 1.00684 0.97176 1.69748 1.44067 1.27646 1.10813 0.85164 0.78021 0.78546 0.78375 1.20717 1.20296 1.19499 1.20642 0.80621 0.85041 0.87472 1.90417 1.55328 1.86481 1.18828 1.20670 0.96836 0.92918 0.95701 1.21108 0.91159 1.04152 0.96391 1.22966 0.95774 0.98949 0.99313 1.23858 1.00714 0.97144 1.01858 1.21308 0.98392 0.96195 0.96125 1.21684 0.95382 1.01439 0.98413 1.21505 0.96277 0.98258 0.98599 1.21402 0.98855 0.97490 0.97061 1.22290 0.92058 1.04415 0.98405 0.75320 0.88070 0.84288 0.92106 0.91045 0.87037 0.86528 0.87998 0.89782 0.93064 0.88876 0.91387 0.93717 0.89623 0.92620 0.91092 0.96393 0.88484 0.89643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -10.31 19.11 74.32 1.42 -8.89 16 2 C -0.14 -6.10 9.03 31.12 0.28 -5.82 16 3 C 0.18 7.98 4.27 84.57 0.36 8.34 16 4 N -0.45 -22.75 2.60 -645.42 -1.68 -24.43 16 5 C -0.33 -18.57 9.47 84.04 0.80 -17.78 16 6 H 0.07 4.31 7.25 -2.91 -0.02 4.29 16 7 C 0.00 0.21 5.28 84.93 0.45 0.66 16 8 N -0.88 -45.07 8.61 21.66 0.19 -44.89 16 9 Si 0.97 43.78 29.58 68.60 2.03 45.81 16 10 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 11 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 12 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 13 C 0.47 22.33 4.16 87.66 0.36 22.69 16 14 O -0.62 -34.59 13.44 -3.07 -0.04 -34.63 16 15 C -0.06 -2.02 0.28 -52.93 -0.01 -2.03 16 16 C -0.09 -2.73 4.47 29.85 0.13 -2.60 16 17 C -0.15 -4.80 7.99 25.65 0.20 -4.59 16 18 C -0.20 -6.61 14.32 67.78 0.97 -5.64 16 19 C -0.08 -2.59 4.07 30.59 0.12 -2.47 16 20 C -0.13 -4.41 5.63 30.60 0.17 -4.24 16 21 C -0.11 -3.15 5.92 30.60 0.18 -2.97 16 22 C -0.11 -3.69 5.00 30.59 0.15 -3.54 16 23 C -0.13 -4.22 4.06 30.60 0.12 -4.10 16 24 H 0.23 6.95 7.80 -4.42 -0.03 6.92 16 25 H 0.10 3.81 2.75 -2.39 -0.01 3.80 16 26 H 0.14 6.82 5.30 -4.87 -0.03 6.79 16 27 H 0.27 13.05 8.31 -92.71 -0.77 12.28 16 28 H 0.07 2.29 4.86 -2.39 -0.01 2.27 16 29 H 0.11 2.47 8.14 -2.38 -0.02 2.45 16 30 H 0.12 3.36 7.13 -2.91 -0.02 3.34 16 31 H 0.10 3.06 8.06 -2.91 -0.02 3.04 16 32 H 0.08 2.99 7.84 -2.91 -0.02 2.97 16 33 H 0.05 1.75 6.56 -2.39 -0.02 1.73 16 34 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 35 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.04 1.95 5.67 -2.39 -0.01 1.94 16 37 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.07 2.10 8.14 -2.38 -0.02 2.08 16 40 H 0.02 0.76 7.12 -2.39 -0.02 0.74 16 41 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 42 H 0.09 2.92 2.59 -2.39 -0.01 2.91 16 Total: -1.00 -65.65 316.86 7.21 -58.44 By element: Atomic # 1 Polarization: 31.69 SS G_CDS: 1.00 Total: 32.69 kcal Atomic # 6 Polarization: -38.70 SS G_CDS: 5.72 Total: -32.98 kcal Atomic # 7 Polarization: -67.83 SS G_CDS: -1.49 Total: -69.32 kcal Atomic # 8 Polarization: -34.59 SS G_CDS: -0.04 Total: -34.63 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Total: -65.65 7.21 -58.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491765122.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.166 kcal (2) G-P(sol) polarization free energy of solvation -65.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.442 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds