Wall clock time and date at job start Mon Mar 30 2020 02:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46661 * 2 1 4 4 O 1.42899 * 110.87703 * 67.39263 * 3 2 1 5 5 C 1.55136 * 110.99359 * 303.54025 * 3 2 1 6 6 C 1.54319 * 103.02384 * 206.22048 * 5 3 2 7 7 N 1.47445 * 107.22874 * 22.28890 * 6 5 3 8 8 C 1.46897 * 111.00231 * 123.25882 * 7 6 5 9 9 C 1.50700 * 109.47186 * 69.86799 * 8 7 6 10 10 C 1.38644 * 119.74610 * 90.00161 * 9 8 7 11 11 C 1.37617 * 120.24683 * 179.97438 * 10 9 8 12 12 C 1.40722 * 119.74163 * 0.02562 * 11 10 9 13 13 C 1.41400 * 120.23930 * 180.02562 * 12 11 10 14 14 H 1.07993 * 119.99650 * 207.08963 * 13 12 11 15 15 C 1.39952 * 119.99944 * 27.09605 * 13 12 11 16 16 N 1.30821 * 119.99375 * 197.01393 * 15 13 12 17 17 Si 1.86794 * 120.00091 * 17.01160 * 15 13 12 18 18 H 1.48506 * 109.47143 * 264.88385 * 17 15 13 19 19 H 1.48498 * 109.47386 * 24.88342 * 17 15 13 20 20 H 1.48504 * 109.47024 * 144.88634 * 17 15 13 21 21 C 1.40710 * 119.51725 * 0.27255 * 12 11 10 22 22 C 1.37623 * 119.74227 * 359.45009 * 21 12 11 23 23 C 1.47850 * 108.56976 * 0.98675 * 7 6 5 24 24 H 1.09001 * 109.47191 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47382 * 299.99996 * 1 2 3 26 26 H 1.09000 * 109.47189 * 60.00014 * 1 2 3 27 27 H 1.08991 * 109.47250 * 240.00065 * 2 1 3 28 28 H 1.09001 * 109.46858 * 119.99558 * 2 1 3 29 29 H 0.96695 * 114.00197 * 297.60376 * 4 3 2 30 30 H 1.09004 * 110.70329 * 87.83853 * 5 3 2 31 31 H 1.09001 * 110.70524 * 324.60608 * 5 3 2 32 32 H 1.08992 * 109.88858 * 262.88214 * 6 5 3 33 33 H 1.08998 * 109.88849 * 141.68985 * 6 5 3 34 34 H 1.09003 * 109.46824 * 309.86814 * 8 7 6 35 35 H 1.08995 * 109.47319 * 189.87375 * 8 7 6 36 36 H 1.08000 * 119.87590 * 0.02562 * 10 9 8 37 37 H 1.07996 * 120.12869 * 180.02562 * 11 10 9 38 38 H 0.97007 * 119.99784 * 179.97438 * 16 15 13 39 39 H 1.07993 * 120.13288 * 179.72219 * 21 12 11 40 40 H 1.07995 * 119.87815 * 180.27489 * 22 21 12 41 41 H 1.08990 * 110.37099 * 94.73744 * 23 7 6 42 42 H 1.09004 * 110.37100 * 217.07947 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 1.7257 2.0937 1.2326 5 6 1.4706 2.2333 -1.2072 6 6 2.5364 3.3243 -1.4421 7 7 3.7961 2.8392 -0.8489 8 6 4.8718 2.8097 -1.8488 9 6 5.2612 4.2201 -2.2095 10 6 6.2585 4.8631 -1.4924 11 6 6.6226 6.1509 -1.8133 12 6 5.9781 6.8150 -2.8734 13 6 6.3443 8.1380 -3.2125 14 1 5.6253 8.7942 -3.6801 15 6 7.6385 8.5969 -2.9422 16 7 7.8895 9.8808 -2.9380 17 14 9.0073 7.3763 -2.5875 18 1 9.1470 7.2022 -1.1193 19 1 8.6794 6.0696 -3.2119 20 1 10.2837 7.8870 -3.1490 21 6 4.9630 6.1548 -3.5901 22 6 4.6192 4.8649 -3.2554 23 6 3.5622 1.4937 -0.2823 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 0.7775 2.1719 1.4056 30 1 0.5093 2.6814 -0.9556 31 1 1.3795 1.5889 -2.0816 32 1 2.2310 4.2514 -0.9572 33 1 2.6693 3.4888 -2.5114 34 1 4.5241 2.2892 -2.7412 35 1 5.7359 2.2880 -1.4375 36 1 6.7520 4.3512 -0.6795 37 1 7.4000 6.6498 -1.2538 38 1 8.7865 10.1990 -2.7503 39 1 4.4588 6.6567 -4.4026 40 1 3.8435 4.3546 -3.8069 41 1 3.8406 0.7250 -1.0030 42 1 4.1242 1.3689 0.6433 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000495198027.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:41 Heat of formation + Delta-G solvation = -34.177156 kcal Electronic energy + Delta-G solvation = -21219.519985 eV Core-core repulsion = 18163.564183 eV Total energy + Delta-G solvation = -3055.955801 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.81729 -37.90443 -35.98120 -33.69789 -33.08880 -31.41979 -29.84955 -29.51318 -28.42217 -26.14524 -23.42990 -23.34676 -21.47931 -20.85447 -20.36282 -19.61259 -17.39461 -16.89312 -15.96041 -15.75941 -15.41897 -14.72790 -14.47142 -14.05675 -13.80701 -13.71483 -13.34098 -13.07394 -12.78102 -12.61760 -12.50278 -12.28718 -12.07415 -11.81017 -11.65767 -11.62287 -11.27925 -11.15874 -10.86847 -10.73161 -10.51384 -10.44667 -10.19279 -9.91204 -9.71227 -9.47993 -9.07340 -7.95917 -7.63464 -7.47687 -6.92389 -4.44111 2.60798 2.75768 3.14253 3.25317 3.35092 3.99416 4.01444 4.19146 4.41865 4.54941 4.62272 4.79203 4.90246 5.10700 5.16328 5.36038 5.46463 5.51364 5.57436 5.63314 5.65516 5.72730 5.78558 5.81594 5.88390 5.95627 6.02807 6.12573 6.22012 6.22369 6.35951 6.59369 6.88799 6.94443 7.21861 7.27149 7.39682 7.49684 7.60346 7.66336 7.87042 7.94221 8.17672 8.39133 8.70835 8.84326 10.10056 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.040756 B = 0.003709 C = 0.003611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.849248 B = 7546.918682 C = 7751.837134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.143 4.143 3 C 0.123 3.877 4 O -0.540 6.540 5 C -0.167 4.167 6 C 0.051 3.949 7 N -0.517 5.517 8 C 0.113 3.887 9 C -0.209 4.209 10 C -0.052 4.052 11 C -0.243 4.243 12 C 0.095 3.905 13 C -0.445 4.445 14 H 0.089 0.911 15 C 0.082 3.918 16 N -0.810 5.810 17 Si 0.917 3.083 18 H -0.271 1.271 19 H -0.243 1.243 20 H -0.294 1.294 21 C -0.213 4.213 22 C -0.073 4.073 23 C 0.055 3.945 24 H 0.056 0.944 25 H 0.054 0.946 26 H 0.058 0.942 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.370 0.630 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.060 0.940 34 H 0.026 0.974 35 H 0.065 0.935 36 H 0.092 0.908 37 H 0.098 0.902 38 H 0.285 0.715 39 H 0.098 0.902 40 H 0.088 0.912 41 H 0.053 0.947 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.473 -17.227 3.800 20.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.181 4.181 3 C 0.081 3.919 4 O -0.345 6.345 5 C -0.205 4.205 6 C -0.076 4.076 7 N -0.240 5.240 8 C -0.013 4.013 9 C -0.211 4.211 10 C -0.071 4.071 11 C -0.262 4.262 12 C 0.092 3.908 13 C -0.474 4.474 14 H 0.107 0.893 15 C -0.136 4.136 16 N -0.434 5.434 17 Si 0.744 3.256 18 H -0.198 1.198 19 H -0.166 1.166 20 H -0.222 1.222 21 C -0.232 4.232 22 C -0.092 4.092 23 C -0.073 4.073 24 H 0.076 0.924 25 H 0.073 0.927 26 H 0.077 0.923 27 H 0.089 0.911 28 H 0.090 0.910 29 H 0.217 0.783 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.078 0.922 34 H 0.044 0.956 35 H 0.084 0.916 36 H 0.110 0.890 37 H 0.115 0.885 38 H 0.095 0.905 39 H 0.116 0.884 40 H 0.106 0.894 41 H 0.072 0.928 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -9.504 -16.591 4.222 19.581 hybrid contribution -0.226 -0.830 -0.519 1.005 sum -9.730 -17.421 3.703 20.295 Atomic orbital electron populations 1.21802 0.95490 1.02011 1.01959 1.22072 0.96510 0.96587 1.02965 1.22279 0.95258 0.90236 0.84110 1.86623 1.28514 1.80870 1.38509 1.23506 0.99841 0.98693 0.98507 1.22745 0.88114 0.97757 0.99024 1.63693 1.05734 1.21200 1.33421 1.20921 0.93330 0.95248 0.91837 1.18839 1.03968 0.95972 1.02320 1.20389 0.95808 0.94192 0.96673 1.20965 1.06396 0.96711 1.02089 1.17731 0.91052 0.92387 0.89631 1.19536 0.97826 0.95759 1.34249 0.89297 1.26195 1.00696 0.95704 0.91047 1.69692 1.23453 1.15019 1.35276 0.86256 0.78031 0.82176 0.79127 1.19776 1.16644 1.22228 1.20917 1.04510 0.94970 1.02825 1.20461 0.97444 0.94942 0.96310 1.23030 0.93228 0.91065 0.99961 0.92449 0.92660 0.92313 0.91052 0.90984 0.78319 0.90692 0.90982 0.90623 0.92211 0.95554 0.91618 0.88971 0.88450 0.90482 0.88427 0.89382 0.92846 0.89845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.05 9.48 37.16 0.35 -0.70 16 2 C -0.14 -1.20 5.34 -26.73 -0.14 -1.34 16 3 C 0.12 1.35 0.98 -88.48 -0.09 1.26 16 4 O -0.54 -6.54 13.17 -35.23 -0.46 -7.01 16 5 C -0.17 -1.84 4.84 -24.91 -0.12 -1.96 16 6 C 0.05 0.76 6.26 -2.83 -0.02 0.74 16 7 N -0.52 -8.33 5.15 -232.69 -1.20 -9.53 16 8 C 0.11 1.91 4.74 -4.98 -0.02 1.89 16 9 C -0.21 -4.33 5.13 -104.33 -0.54 -4.86 16 10 C -0.05 -1.17 9.67 -39.66 -0.38 -1.55 16 11 C -0.24 -6.04 7.08 -38.87 -0.28 -6.31 16 12 C 0.10 2.47 5.19 -106.82 -0.55 1.91 16 13 C -0.45 -12.31 9.60 -37.74 -0.36 -12.67 16 14 H 0.09 2.56 8.06 -52.49 -0.42 2.14 16 15 C 0.08 2.20 5.43 -17.34 -0.09 2.11 16 16 N -0.81 -22.02 13.93 55.55 0.77 -21.25 16 17 Si 0.92 21.39 24.41 -169.99 -4.15 17.24 16 18 H -0.27 -6.19 6.69 56.52 0.38 -5.81 16 19 H -0.24 -5.79 6.70 56.52 0.38 -5.41 16 20 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 21 C -0.21 -5.02 9.80 -38.87 -0.38 -5.41 16 22 C -0.07 -1.53 8.70 -39.66 -0.35 -1.88 16 23 C 0.05 0.72 5.89 -2.29 -0.01 0.71 16 24 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.05 0.34 7.12 -51.93 -0.37 -0.03 16 26 H 0.06 0.39 7.17 -51.93 -0.37 0.02 16 27 H 0.07 0.57 8.00 -51.93 -0.42 0.15 16 28 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.37 3.04 7.89 45.56 0.36 3.40 16 30 H 0.07 0.73 8.11 -51.93 -0.42 0.31 16 31 H 0.07 0.72 8.04 -51.93 -0.42 0.30 16 32 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.06 0.91 5.47 -51.93 -0.28 0.62 16 34 H 0.03 0.41 7.90 -51.93 -0.41 0.00 16 35 H 0.07 1.06 8.01 -51.93 -0.42 0.64 16 36 H 0.09 1.89 8.06 -52.49 -0.42 1.47 16 37 H 0.10 2.43 4.27 -52.49 -0.22 2.21 16 38 H 0.28 7.01 8.30 -40.82 -0.34 6.67 16 39 H 0.10 2.19 8.06 -52.49 -0.42 1.76 16 40 H 0.09 1.61 6.89 -52.49 -0.36 1.25 16 41 H 0.05 0.62 7.60 -51.93 -0.39 0.23 16 42 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 326.79 15.07 4.92 4.92 Total: -1.00 -29.31 326.79 -8.96 -38.28 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -5.87 Total: 5.38 kcal Atomic # 6 Polarization: -25.06 SS G_CDS: -2.98 Total: -28.05 kcal Atomic # 7 Polarization: -30.35 SS G_CDS: -0.42 Total: -30.77 kcal Atomic # 8 Polarization: -6.54 SS G_CDS: -0.46 Total: -7.01 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.15 Total: 17.24 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -29.31 -8.96 -38.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495198027.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.100 kcal (2) G-P(sol) polarization free energy of solvation -29.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds