Wall clock time and date at job start Mon Mar 30 2020 02:21:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46661 * 2 1 4 4 O 1.42899 * 110.87703 * 67.39263 * 3 2 1 5 5 C 1.55136 * 110.99359 * 303.54025 * 3 2 1 6 6 C 1.54319 * 103.02384 * 206.22048 * 5 3 2 7 7 N 1.47445 * 107.22874 * 22.28890 * 6 5 3 8 8 C 1.46897 * 111.00231 * 123.25882 * 7 6 5 9 9 C 1.50700 * 109.47186 * 69.86799 * 8 7 6 10 10 C 1.38644 * 119.74610 * 90.00161 * 9 8 7 11 11 C 1.37617 * 120.24683 * 179.97438 * 10 9 8 12 12 C 1.40722 * 119.74163 * 0.02562 * 11 10 9 13 13 C 1.41400 * 120.23930 * 180.02562 * 12 11 10 14 14 H 1.07993 * 119.99650 * 207.08963 * 13 12 11 15 15 C 1.39952 * 119.99944 * 27.09605 * 13 12 11 16 16 N 1.30821 * 119.99375 * 197.01393 * 15 13 12 17 17 Si 1.86794 * 120.00091 * 17.01160 * 15 13 12 18 18 H 1.48506 * 109.47143 * 264.88385 * 17 15 13 19 19 H 1.48498 * 109.47386 * 24.88342 * 17 15 13 20 20 H 1.48504 * 109.47024 * 144.88634 * 17 15 13 21 21 C 1.40710 * 119.51725 * 0.27255 * 12 11 10 22 22 C 1.37623 * 119.74227 * 359.45009 * 21 12 11 23 23 C 1.47850 * 108.56976 * 0.98675 * 7 6 5 24 24 H 1.09001 * 109.47191 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47382 * 299.99996 * 1 2 3 26 26 H 1.09000 * 109.47189 * 60.00014 * 1 2 3 27 27 H 1.08991 * 109.47250 * 240.00065 * 2 1 3 28 28 H 1.09001 * 109.46858 * 119.99558 * 2 1 3 29 29 H 0.96695 * 114.00197 * 297.60376 * 4 3 2 30 30 H 1.09004 * 110.70329 * 87.83853 * 5 3 2 31 31 H 1.09001 * 110.70524 * 324.60608 * 5 3 2 32 32 H 1.08992 * 109.88858 * 262.88214 * 6 5 3 33 33 H 1.08998 * 109.88849 * 141.68985 * 6 5 3 34 34 H 1.09003 * 109.46824 * 309.86814 * 8 7 6 35 35 H 1.08995 * 109.47319 * 189.87375 * 8 7 6 36 36 H 1.08000 * 119.87590 * 0.02562 * 10 9 8 37 37 H 1.07996 * 120.12869 * 180.02562 * 11 10 9 38 38 H 0.97007 * 119.99784 * 179.97438 * 16 15 13 39 39 H 1.07993 * 120.13288 * 179.72219 * 21 12 11 40 40 H 1.07995 * 119.87815 * 180.27489 * 22 21 12 41 41 H 1.08990 * 110.37099 * 94.73744 * 23 7 6 42 42 H 1.09004 * 110.37100 * 217.07947 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 1.7257 2.0937 1.2326 5 6 1.4706 2.2333 -1.2072 6 6 2.5364 3.3243 -1.4421 7 7 3.7961 2.8392 -0.8489 8 6 4.8718 2.8097 -1.8488 9 6 5.2612 4.2201 -2.2095 10 6 6.2585 4.8631 -1.4924 11 6 6.6226 6.1509 -1.8133 12 6 5.9781 6.8150 -2.8734 13 6 6.3443 8.1380 -3.2125 14 1 5.6253 8.7942 -3.6801 15 6 7.6385 8.5969 -2.9422 16 7 7.8895 9.8808 -2.9380 17 14 9.0073 7.3763 -2.5875 18 1 9.1470 7.2022 -1.1193 19 1 8.6794 6.0696 -3.2119 20 1 10.2837 7.8870 -3.1490 21 6 4.9630 6.1548 -3.5901 22 6 4.6192 4.8649 -3.2554 23 6 3.5622 1.4937 -0.2823 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 0.7775 2.1719 1.4056 30 1 0.5093 2.6814 -0.9556 31 1 1.3795 1.5889 -2.0816 32 1 2.2310 4.2514 -0.9572 33 1 2.6693 3.4888 -2.5114 34 1 4.5241 2.2892 -2.7412 35 1 5.7359 2.2880 -1.4375 36 1 6.7520 4.3512 -0.6795 37 1 7.4000 6.6498 -1.2538 38 1 8.7865 10.1990 -2.7503 39 1 4.4588 6.6567 -4.4026 40 1 3.8435 4.3546 -3.8069 41 1 3.8406 0.7250 -1.0030 42 1 4.1242 1.3689 0.6433 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000495198027.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:40 Heat of formation + Delta-G solvation = -54.557006 kcal Electronic energy + Delta-G solvation = -21220.403721 eV Core-core repulsion = 18163.564183 eV Total energy + Delta-G solvation = -3056.839538 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.85275 -39.58180 -37.15555 -35.52211 -33.95612 -32.90542 -31.56165 -30.86956 -29.52523 -27.62064 -24.99581 -24.12873 -23.27582 -22.27558 -21.46088 -20.88363 -19.35899 -17.78185 -17.56712 -16.87339 -16.52531 -16.24534 -15.82436 -15.59245 -15.27367 -14.75727 -14.57571 -14.53177 -14.13817 -14.00762 -13.74262 -13.57188 -13.35265 -12.98820 -12.91804 -12.67914 -12.57411 -12.44977 -12.36614 -12.04189 -11.89245 -11.75332 -11.59803 -11.43766 -11.26254 -10.93908 -10.74323 -9.47484 -9.40624 -9.08071 -8.91306 -6.49206 0.77229 0.89646 1.25203 1.39627 1.48024 2.11587 2.54388 3.11198 3.27770 3.59281 3.61221 3.73362 3.91853 4.17484 4.21203 4.25115 4.32604 4.42734 4.48064 4.49782 4.64301 4.65755 4.76491 4.79460 4.84353 4.90686 4.93076 5.00550 5.06399 5.09172 5.12186 5.23034 5.28736 5.33455 5.42972 5.62398 5.76325 5.90186 6.03749 6.21409 6.23075 6.26473 6.42492 6.75057 6.84670 6.91904 8.17391 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.040756 B = 0.003709 C = 0.003611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.849248 B = 7546.918682 C = 7751.837134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.136 4.136 3 C 0.126 3.874 4 O -0.564 6.564 5 C -0.156 4.156 6 C 0.047 3.953 7 N -0.540 5.540 8 C 0.117 3.883 9 C -0.187 4.187 10 C -0.064 4.064 11 C -0.255 4.255 12 C 0.072 3.928 13 C -0.485 4.485 14 H 0.055 0.945 15 C 0.045 3.955 16 N -0.852 5.852 17 Si 0.971 3.029 18 H -0.263 1.263 19 H -0.251 1.251 20 H -0.279 1.279 21 C -0.224 4.224 22 C -0.069 4.069 23 C 0.051 3.949 24 H 0.065 0.935 25 H 0.059 0.941 26 H 0.061 0.939 27 H 0.080 0.920 28 H 0.070 0.930 29 H 0.385 0.615 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.049 0.951 33 H 0.056 0.944 34 H 0.047 0.953 35 H 0.077 0.923 36 H 0.114 0.886 37 H 0.092 0.908 38 H 0.293 0.707 39 H 0.100 0.900 40 H 0.123 0.877 41 H 0.074 0.926 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.484 -21.144 4.278 24.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.174 4.174 3 C 0.084 3.916 4 O -0.372 6.372 5 C -0.194 4.194 6 C -0.081 4.081 7 N -0.265 5.265 8 C -0.010 4.010 9 C -0.189 4.189 10 C -0.083 4.083 11 C -0.274 4.274 12 C 0.070 3.930 13 C -0.515 4.515 14 H 0.073 0.927 15 C -0.169 4.169 16 N -0.479 5.479 17 Si 0.796 3.204 18 H -0.189 1.189 19 H -0.174 1.174 20 H -0.206 1.206 21 C -0.244 4.244 22 C -0.087 4.087 23 C -0.077 4.077 24 H 0.085 0.915 25 H 0.078 0.922 26 H 0.080 0.920 27 H 0.098 0.902 28 H 0.089 0.911 29 H 0.235 0.765 30 H 0.106 0.894 31 H 0.108 0.892 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.096 0.904 36 H 0.132 0.868 37 H 0.110 0.890 38 H 0.104 0.896 39 H 0.118 0.882 40 H 0.141 0.859 41 H 0.092 0.908 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -10.538 -20.513 4.706 23.537 hybrid contribution -0.103 0.206 -0.615 0.657 sum -10.641 -20.307 4.091 23.288 Atomic orbital electron populations 1.21804 0.94225 1.02775 1.02359 1.22002 0.97536 0.94484 1.03345 1.22290 0.93882 0.91732 0.83659 1.86577 1.30225 1.81274 1.39114 1.23455 0.99091 0.97654 0.99249 1.22719 0.89008 0.98145 0.98232 1.63497 1.06082 1.23568 1.33318 1.20886 0.94431 0.92491 0.93221 1.19405 1.01553 0.97602 1.00304 1.20725 0.96472 0.93525 0.97541 1.21069 1.06581 0.97852 1.01909 1.17876 0.92384 0.92129 0.90632 1.19517 0.98318 0.96743 1.36880 0.92715 1.26855 1.02137 0.97127 0.90804 1.69719 1.24476 1.16211 1.37462 0.85418 0.76031 0.79687 0.79301 1.18868 1.17445 1.20564 1.21141 1.04087 0.96248 1.02906 1.20802 0.97724 0.93849 0.96362 1.23111 0.94873 0.89888 0.99788 0.91549 0.92186 0.92041 0.90172 0.91131 0.76521 0.89392 0.89202 0.93229 0.92553 0.93493 0.90419 0.86750 0.88991 0.89621 0.88192 0.85949 0.90783 0.90882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.48 71.98 0.68 -0.82 16 2 C -0.14 -1.75 5.34 30.60 0.16 -1.59 16 3 C 0.13 2.34 0.98 -9.41 -0.01 2.34 16 4 O -0.56 -12.28 13.17 -148.98 -1.96 -14.24 16 5 C -0.16 -2.87 4.84 31.77 0.15 -2.72 16 6 C 0.05 1.26 6.26 86.65 0.54 1.80 16 7 N -0.54 -15.80 5.15 -890.10 -4.58 -20.38 16 8 C 0.12 3.49 4.74 85.56 0.41 3.90 16 9 C -0.19 -7.24 5.13 -19.67 -0.10 -7.34 16 10 C -0.06 -2.76 9.67 22.22 0.21 -2.55 16 11 C -0.25 -12.68 7.08 22.73 0.16 -12.52 16 12 C 0.07 3.85 5.19 -21.29 -0.11 3.74 16 13 C -0.48 -28.34 9.60 23.46 0.23 -28.11 16 14 H 0.05 3.42 8.06 -2.91 -0.02 3.40 16 15 C 0.04 2.50 5.43 85.26 0.46 2.96 16 16 N -0.85 -48.40 13.93 21.83 0.30 -48.10 16 17 Si 0.97 44.81 24.41 68.60 1.67 46.48 16 18 H -0.26 -11.61 6.69 99.48 0.67 -10.95 16 19 H -0.25 -11.72 6.70 99.48 0.67 -11.05 16 20 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 21 C -0.22 -10.63 9.80 22.73 0.22 -10.41 16 22 C -0.07 -2.75 8.70 22.22 0.19 -2.56 16 23 C 0.05 1.16 5.89 86.77 0.51 1.67 16 24 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 25 H 0.06 0.53 7.12 -2.39 -0.02 0.51 16 26 H 0.06 0.58 7.17 -2.39 -0.02 0.56 16 27 H 0.08 0.91 8.00 -2.39 -0.02 0.89 16 28 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.39 5.35 7.89 -74.06 -0.58 4.77 16 30 H 0.09 1.40 8.11 -2.39 -0.02 1.38 16 31 H 0.09 1.37 8.04 -2.39 -0.02 1.35 16 32 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.06 1.53 5.47 -2.39 -0.01 1.52 16 34 H 0.05 1.24 7.90 -2.39 -0.02 1.22 16 35 H 0.08 2.17 8.01 -2.39 -0.02 2.15 16 36 H 0.11 4.39 8.06 -2.91 -0.02 4.37 16 37 H 0.09 4.61 4.27 -2.91 -0.01 4.60 16 38 H 0.29 14.95 8.30 -92.70 -0.77 14.18 16 39 H 0.10 4.57 8.06 -2.91 -0.02 4.55 16 40 H 0.12 4.04 6.89 -2.91 -0.02 4.02 16 41 H 0.07 1.39 7.60 -2.39 -0.02 1.37 16 42 H 0.07 1.82 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -65.54 326.79 -0.50 -66.04 By element: Atomic # 1 Polarization: 22.06 SS G_CDS: 0.34 Total: 22.41 kcal Atomic # 6 Polarization: -55.92 SS G_CDS: 3.72 Total: -52.20 kcal Atomic # 7 Polarization: -64.21 SS G_CDS: -4.28 Total: -68.48 kcal Atomic # 8 Polarization: -12.28 SS G_CDS: -1.96 Total: -14.24 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 1.67 Total: 46.48 kcal Total: -65.54 -0.50 -66.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495198027.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.482 kcal (2) G-P(sol) polarization free energy of solvation -65.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds