Wall clock time and date at job start Mon Mar 30 2020 02:21:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47296 * 2 1 4 4 O 1.42898 * 110.36486 * 299.27061 * 3 2 1 5 5 C 1.54257 * 110.32140 * 61.44944 * 3 2 1 6 6 C 1.54379 * 105.06063 * 118.90412 * 5 3 2 7 7 N 1.48561 * 104.59631 * 23.84637 * 6 5 3 8 8 C 1.46900 * 111.00492 * 200.96592 * 7 6 5 9 9 C 1.50705 * 109.47166 * 69.87091 * 8 7 6 10 10 C 1.38630 * 119.74895 * 269.73248 * 9 8 7 11 11 C 1.37625 * 120.24515 * 179.76284 * 10 9 8 12 12 C 1.40711 * 119.74146 * 0.53039 * 11 10 9 13 13 C 1.41404 * 120.24149 * 179.74507 * 12 11 10 14 14 H 1.07994 * 119.99805 * 150.20572 * 13 12 11 15 15 C 1.39945 * 119.99668 * 330.20667 * 13 12 11 16 16 N 1.30825 * 119.99505 * 161.73738 * 15 13 12 17 17 Si 1.86800 * 120.00538 * 341.73070 * 15 13 12 18 18 H 1.48494 * 109.46929 * 95.40946 * 17 15 13 19 19 H 1.48494 * 109.47310 * 215.41339 * 17 15 13 20 20 H 1.48500 * 109.46836 * 335.41687 * 17 15 13 21 21 C 1.40716 * 119.51536 * 359.72297 * 12 11 10 22 22 C 1.37610 * 119.74484 * 359.97438 * 21 12 11 23 23 C 1.48568 * 104.21988 * 320.52217 * 7 6 5 24 24 H 1.08996 * 109.47066 * 60.01008 * 1 2 3 25 25 H 1.09004 * 109.47169 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47524 * 300.00145 * 1 2 3 27 27 H 1.08999 * 109.47393 * 239.99328 * 2 1 3 28 28 H 1.09001 * 109.46891 * 119.99718 * 2 1 3 29 29 H 0.96703 * 114.00039 * 60.72630 * 4 3 2 30 30 H 1.09006 * 110.32391 * 237.79350 * 5 3 2 31 31 H 1.08992 * 110.33038 * 359.90162 * 5 3 2 32 32 H 1.08992 * 110.41567 * 142.62977 * 6 5 3 33 33 H 1.09003 * 110.40695 * 264.95202 * 6 5 3 34 34 H 1.08998 * 109.47223 * 189.87440 * 8 7 6 35 35 H 1.09001 * 109.46722 * 309.87697 * 8 7 6 36 36 H 1.08003 * 119.87757 * 359.97438 * 10 9 8 37 37 H 1.07999 * 120.12815 * 180.22536 * 11 10 9 38 38 H 0.97010 * 119.99683 * 179.97438 * 16 15 13 39 39 H 1.08004 * 120.12611 * 180.02562 * 21 12 11 40 40 H 1.08004 * 119.88002 * 180.02562 * 22 21 12 41 41 H 1.09000 * 110.41291 * 280.70215 * 23 7 6 42 42 H 1.09006 * 110.40707 * 158.25858 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 1.5883 2.1297 -1.1686 5 6 1.5668 2.1780 1.2706 6 6 2.8625 2.5843 2.0050 7 7 3.8975 2.6307 0.9402 8 6 5.2459 2.5119 1.5110 9 6 5.4489 1.1128 2.0332 10 6 5.1221 0.8148 3.3470 11 6 5.2988 -0.4606 3.8331 12 6 5.8237 -1.4609 2.9941 13 6 6.0147 -2.7735 3.4841 14 1 5.9440 -3.6161 2.8125 15 6 6.2953 -2.9804 4.8395 16 7 6.1221 -4.1637 5.3700 17 14 6.9172 -1.5673 5.8911 18 1 5.7740 -0.9358 6.5977 19 1 7.8911 -2.0824 6.8867 20 1 7.5807 -0.5603 5.0246 21 6 6.1569 -1.1455 1.6639 22 6 5.9659 0.1350 1.1974 23 6 3.5818 1.4660 0.0735 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 0.6258 2.1856 -1.2446 30 1 0.9899 3.0634 1.0029 31 1 0.9697 1.5121 1.8935 32 1 2.7468 3.5653 2.4656 33 1 3.1221 1.8400 2.7578 34 1 5.9867 2.7231 0.7399 35 1 5.3585 3.2245 2.3281 36 1 4.7241 1.5855 3.9906 37 1 5.0401 -0.6916 4.8559 38 1 6.3169 -4.3072 6.3094 39 1 6.5602 -1.9057 1.0112 40 1 6.2205 0.3794 0.1766 41 1 3.9551 0.5457 0.5226 42 1 4.0077 1.6052 -0.9202 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000495198028.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:45 Heat of formation + Delta-G solvation = -34.060407 kcal Electronic energy + Delta-G solvation = -22007.413934 eV Core-core repulsion = 18951.463196 eV Total energy + Delta-G solvation = -3055.950739 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.87168 -37.97954 -35.92791 -33.70474 -32.83275 -31.38258 -29.97549 -29.36421 -28.24749 -26.05218 -23.71494 -23.02143 -21.63643 -20.83833 -19.88507 -19.67271 -17.49852 -16.86283 -15.88027 -15.60094 -15.18575 -14.76439 -14.26983 -14.03979 -13.90538 -13.72193 -13.58743 -12.91880 -12.73146 -12.42100 -12.26730 -12.20080 -11.95188 -11.77679 -11.43321 -11.18446 -11.05415 -11.00456 -10.85103 -10.81379 -10.58872 -10.32430 -10.23205 -10.02474 -9.75221 -9.63088 -9.19862 -8.02314 -7.77792 -7.58435 -7.02455 -4.55778 2.46952 2.59668 3.04995 3.16145 3.26592 3.92169 4.30646 4.30892 4.50523 4.73421 4.85432 4.99303 5.17997 5.29369 5.33279 5.46596 5.55761 5.73378 5.77702 5.79460 5.91641 5.96065 5.97883 6.01378 6.06881 6.07695 6.20083 6.24709 6.25538 6.37769 6.41639 6.50404 6.73699 6.81932 7.08436 7.14393 7.34641 7.36021 7.51426 7.72751 7.77918 7.80159 8.05015 8.28137 8.57983 8.72831 9.99797 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.022640 B = 0.005369 C = 0.004961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.477673 B = 5214.344063 C = 5643.085096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.148 4.148 3 C 0.131 3.869 4 O -0.552 6.552 5 C -0.149 4.149 6 C 0.025 3.975 7 N -0.502 5.502 8 C 0.099 3.901 9 C -0.252 4.252 10 C -0.065 4.065 11 C -0.240 4.240 12 C 0.096 3.904 13 C -0.447 4.447 14 H 0.090 0.910 15 C 0.084 3.916 16 N -0.806 5.806 17 Si 0.912 3.088 18 H -0.271 1.271 19 H -0.291 1.291 20 H -0.244 1.244 21 C -0.210 4.210 22 C -0.069 4.069 23 C 0.036 3.964 24 H 0.052 0.948 25 H 0.058 0.942 26 H 0.057 0.943 27 H 0.070 0.930 28 H 0.077 0.923 29 H 0.367 0.633 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.061 0.939 34 H 0.070 0.930 35 H 0.066 0.934 36 H 0.091 0.909 37 H 0.099 0.901 38 H 0.286 0.714 39 H 0.100 0.900 40 H 0.093 0.907 41 H 0.088 0.912 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.881 9.311 -5.636 13.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.186 4.186 3 C 0.090 3.910 4 O -0.358 6.358 5 C -0.187 4.187 6 C -0.103 4.103 7 N -0.225 5.225 8 C -0.028 4.028 9 C -0.254 4.254 10 C -0.084 4.084 11 C -0.259 4.259 12 C 0.092 3.908 13 C -0.475 4.475 14 H 0.108 0.892 15 C -0.135 4.135 16 N -0.430 5.430 17 Si 0.739 3.261 18 H -0.197 1.197 19 H -0.218 1.218 20 H -0.167 1.167 21 C -0.229 4.229 22 C -0.088 4.088 23 C -0.092 4.092 24 H 0.071 0.929 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.089 0.911 28 H 0.096 0.904 29 H 0.214 0.786 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.079 0.921 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.109 0.891 37 H 0.117 0.883 38 H 0.096 0.904 39 H 0.118 0.882 40 H 0.111 0.889 41 H 0.105 0.895 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -7.222 9.666 -5.850 13.410 hybrid contribution -0.297 -0.479 1.286 1.404 sum -7.519 9.188 -4.564 12.719 Atomic orbital electron populations 1.21816 0.95845 1.02122 1.01485 1.22186 0.96112 0.96767 1.03547 1.21942 0.94812 0.89924 0.84353 1.86605 1.26154 1.78853 1.44166 1.23062 0.98072 1.00317 0.97284 1.23123 0.91223 1.01062 0.94889 1.65849 1.02344 1.38781 1.15482 1.20986 0.90128 0.93574 0.98095 1.19623 1.14241 0.96237 0.95335 1.20466 0.98121 0.95543 0.94247 1.21019 1.10452 0.94600 0.99861 1.17740 0.88545 0.92621 0.91855 1.19527 1.41242 0.92857 0.93890 0.89183 1.26168 0.92300 0.96865 0.98139 1.69701 1.34637 1.24066 1.14628 0.86294 0.79170 0.81547 0.79102 1.19739 1.21814 1.16736 1.21027 1.08930 0.95712 0.97232 1.20523 0.97636 0.93513 0.97127 1.23312 0.91879 0.95318 0.98643 0.92880 0.92311 0.92442 0.91109 0.90399 0.78637 0.90907 0.90937 0.90971 0.92126 0.91152 0.91551 0.89114 0.88348 0.90398 0.88218 0.88852 0.89466 0.90254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.57 9.40 37.16 0.35 -1.22 16 2 C -0.15 -1.90 4.99 -26.73 -0.13 -2.04 16 3 C 0.13 1.80 1.14 -89.24 -0.10 1.70 16 4 O -0.55 -7.41 12.92 -35.23 -0.46 -7.87 16 5 C -0.15 -1.94 5.91 -25.35 -0.15 -2.09 16 6 C 0.03 0.37 6.32 -2.18 -0.01 0.36 16 7 N -0.50 -8.11 5.65 -231.40 -1.31 -9.41 16 8 C 0.10 1.66 5.75 -4.97 -0.03 1.63 16 9 C -0.25 -4.86 3.86 -104.33 -0.40 -5.27 16 10 C -0.06 -1.34 8.00 -39.66 -0.32 -1.66 16 11 C -0.24 -5.61 7.18 -38.87 -0.28 -5.89 16 12 C 0.10 2.36 5.10 -106.82 -0.55 1.81 16 13 C -0.45 -11.86 9.57 -37.74 -0.36 -12.23 16 14 H 0.09 2.50 8.06 -52.49 -0.42 2.08 16 15 C 0.08 2.18 5.40 -17.34 -0.09 2.09 16 16 N -0.81 -21.22 13.93 55.55 0.77 -20.44 16 17 Si 0.91 20.63 24.52 -169.99 -4.17 16.46 16 18 H -0.27 -5.96 6.71 56.52 0.38 -5.58 16 19 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 20 H -0.24 -5.69 6.86 56.52 0.39 -5.30 16 21 C -0.21 -4.71 9.80 -38.88 -0.38 -5.09 16 22 C -0.07 -1.38 7.45 -39.66 -0.30 -1.68 16 23 C 0.04 0.58 5.26 -2.18 -0.01 0.57 16 24 H 0.05 0.45 6.88 -51.93 -0.36 0.10 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.06 0.55 6.59 -51.93 -0.34 0.21 16 27 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.08 1.13 8.12 -51.93 -0.42 0.71 16 29 H 0.37 3.49 7.51 45.56 0.34 3.83 16 30 H 0.07 0.87 7.98 -51.93 -0.41 0.45 16 31 H 0.07 0.88 6.49 -51.93 -0.34 0.54 16 32 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.06 0.99 5.25 -51.93 -0.27 0.72 16 34 H 0.07 1.13 8.08 -51.93 -0.42 0.71 16 35 H 0.07 1.05 8.02 -51.93 -0.42 0.63 16 36 H 0.09 1.69 7.52 -52.48 -0.39 1.29 16 37 H 0.10 2.32 4.73 -52.49 -0.25 2.08 16 38 H 0.29 6.80 8.30 -40.82 -0.34 6.46 16 39 H 0.10 2.14 8.06 -52.48 -0.42 1.72 16 40 H 0.09 1.67 8.06 -52.48 -0.42 1.25 16 41 H 0.09 1.56 4.47 -51.93 -0.23 1.33 16 42 H 0.08 1.31 8.08 -51.93 -0.42 0.89 16 LS Contribution 319.46 15.07 4.81 4.81 Total: -1.00 -27.29 319.46 -8.75 -36.04 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: -5.64 Total: 9.40 kcal Atomic # 6 Polarization: -26.23 SS G_CDS: -2.77 Total: -28.99 kcal Atomic # 7 Polarization: -29.32 SS G_CDS: -0.53 Total: -29.86 kcal Atomic # 8 Polarization: -7.41 SS G_CDS: -0.46 Total: -7.87 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -4.17 Total: 16.46 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -27.29 -8.75 -36.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495198028.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.979 kcal (2) G-P(sol) polarization free energy of solvation -27.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds