Wall clock time and date at job start Mon Mar 30 2020 02:21:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47296 * 2 1 4 4 O 1.42898 * 110.36486 * 299.27061 * 3 2 1 5 5 C 1.54257 * 110.32140 * 61.44944 * 3 2 1 6 6 C 1.54379 * 105.06063 * 118.90412 * 5 3 2 7 7 N 1.48561 * 104.59631 * 23.84637 * 6 5 3 8 8 C 1.46900 * 111.00492 * 200.96592 * 7 6 5 9 9 C 1.50705 * 109.47166 * 69.87091 * 8 7 6 10 10 C 1.38630 * 119.74895 * 269.73248 * 9 8 7 11 11 C 1.37625 * 120.24515 * 179.76284 * 10 9 8 12 12 C 1.40711 * 119.74146 * 0.53039 * 11 10 9 13 13 C 1.41404 * 120.24149 * 179.74507 * 12 11 10 14 14 H 1.07994 * 119.99805 * 150.20572 * 13 12 11 15 15 C 1.39945 * 119.99668 * 330.20667 * 13 12 11 16 16 N 1.30825 * 119.99505 * 161.73738 * 15 13 12 17 17 Si 1.86800 * 120.00538 * 341.73070 * 15 13 12 18 18 H 1.48494 * 109.46929 * 95.40946 * 17 15 13 19 19 H 1.48494 * 109.47310 * 215.41339 * 17 15 13 20 20 H 1.48500 * 109.46836 * 335.41687 * 17 15 13 21 21 C 1.40716 * 119.51536 * 359.72297 * 12 11 10 22 22 C 1.37610 * 119.74484 * 359.97438 * 21 12 11 23 23 C 1.48568 * 104.21988 * 320.52217 * 7 6 5 24 24 H 1.08996 * 109.47066 * 60.01008 * 1 2 3 25 25 H 1.09004 * 109.47169 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47524 * 300.00145 * 1 2 3 27 27 H 1.08999 * 109.47393 * 239.99328 * 2 1 3 28 28 H 1.09001 * 109.46891 * 119.99718 * 2 1 3 29 29 H 0.96703 * 114.00039 * 60.72630 * 4 3 2 30 30 H 1.09006 * 110.32391 * 237.79350 * 5 3 2 31 31 H 1.08992 * 110.33038 * 359.90162 * 5 3 2 32 32 H 1.08992 * 110.41567 * 142.62977 * 6 5 3 33 33 H 1.09003 * 110.40695 * 264.95202 * 6 5 3 34 34 H 1.08998 * 109.47223 * 189.87440 * 8 7 6 35 35 H 1.09001 * 109.46722 * 309.87697 * 8 7 6 36 36 H 1.08003 * 119.87757 * 359.97438 * 10 9 8 37 37 H 1.07999 * 120.12815 * 180.22536 * 11 10 9 38 38 H 0.97010 * 119.99683 * 179.97438 * 16 15 13 39 39 H 1.08004 * 120.12611 * 180.02562 * 21 12 11 40 40 H 1.08004 * 119.88002 * 180.02562 * 22 21 12 41 41 H 1.09000 * 110.41291 * 280.70215 * 23 7 6 42 42 H 1.09006 * 110.40707 * 158.25858 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 1.5883 2.1297 -1.1686 5 6 1.5668 2.1780 1.2706 6 6 2.8625 2.5843 2.0050 7 7 3.8975 2.6307 0.9402 8 6 5.2459 2.5119 1.5110 9 6 5.4489 1.1128 2.0332 10 6 5.1221 0.8148 3.3470 11 6 5.2988 -0.4606 3.8331 12 6 5.8237 -1.4609 2.9941 13 6 6.0147 -2.7735 3.4841 14 1 5.9440 -3.6161 2.8125 15 6 6.2953 -2.9804 4.8395 16 7 6.1221 -4.1637 5.3700 17 14 6.9172 -1.5673 5.8911 18 1 5.7740 -0.9358 6.5977 19 1 7.8911 -2.0824 6.8867 20 1 7.5807 -0.5603 5.0246 21 6 6.1569 -1.1455 1.6639 22 6 5.9659 0.1350 1.1974 23 6 3.5818 1.4660 0.0735 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 0.6258 2.1856 -1.2446 30 1 0.9899 3.0634 1.0029 31 1 0.9697 1.5121 1.8935 32 1 2.7468 3.5653 2.4656 33 1 3.1221 1.8400 2.7578 34 1 5.9867 2.7231 0.7399 35 1 5.3585 3.2245 2.3281 36 1 4.7241 1.5855 3.9906 37 1 5.0401 -0.6916 4.8559 38 1 6.3169 -4.3072 6.3094 39 1 6.5602 -1.9057 1.0112 40 1 6.2205 0.3794 0.1766 41 1 3.9551 0.5457 0.5226 42 1 4.0077 1.6052 -0.9202 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000495198028.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:45 Heat of formation + Delta-G solvation = -52.843324 kcal Electronic energy + Delta-G solvation = -22008.228423 eV Core-core repulsion = 18951.463196 eV Total energy + Delta-G solvation = -3056.765227 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.14566 -39.51453 -37.25292 -35.47610 -33.94172 -32.84292 -31.68302 -30.78276 -29.45806 -27.59169 -25.18903 -24.14617 -23.30538 -22.35043 -21.30470 -20.85498 -19.39030 -17.97735 -17.48009 -16.93832 -16.42594 -16.16581 -15.79690 -15.68854 -15.27253 -14.91754 -14.79061 -14.67217 -14.20190 -13.95822 -13.69717 -13.51247 -13.20393 -13.02029 -12.72580 -12.68823 -12.52743 -12.30692 -12.13988 -12.10042 -11.98787 -11.87208 -11.76384 -11.45582 -11.34942 -11.02568 -10.77516 -9.53930 -9.37443 -9.32817 -8.93619 -6.52853 0.71053 0.82712 1.22621 1.36856 1.45443 2.08590 2.53186 3.18599 3.28764 3.48537 3.67306 3.74956 3.95555 4.13898 4.21873 4.25533 4.32788 4.37227 4.48597 4.50225 4.67240 4.72674 4.75405 4.82970 4.88095 4.94589 4.97589 5.01184 5.03635 5.07945 5.11145 5.19366 5.25572 5.28622 5.39869 5.56599 5.70652 5.81419 5.89803 6.06571 6.11473 6.22604 6.37983 6.70926 6.80286 6.92431 8.15057 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.022640 B = 0.005369 C = 0.004961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.477673 B = 5214.344063 C = 5643.085096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.146 4.146 3 C 0.136 3.864 4 O -0.563 6.563 5 C -0.144 4.144 6 C 0.020 3.980 7 N -0.501 5.501 8 C 0.101 3.899 9 C -0.224 4.224 10 C -0.067 4.067 11 C -0.250 4.250 12 C 0.076 3.924 13 C -0.487 4.487 14 H 0.054 0.946 15 C 0.049 3.951 16 N -0.850 5.850 17 Si 0.966 3.034 18 H -0.259 1.259 19 H -0.278 1.278 20 H -0.254 1.254 21 C -0.222 4.222 22 C -0.065 4.065 23 C 0.032 3.968 24 H 0.072 0.928 25 H 0.059 0.941 26 H 0.065 0.935 27 H 0.062 0.938 28 H 0.053 0.947 29 H 0.385 0.615 30 H 0.090 0.910 31 H 0.080 0.920 32 H 0.090 0.910 33 H 0.044 0.956 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.119 0.881 37 H 0.094 0.906 38 H 0.293 0.707 39 H 0.098 0.902 40 H 0.119 0.881 41 H 0.065 0.935 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.072 12.821 -6.079 16.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.185 4.185 3 C 0.095 3.905 4 O -0.371 6.371 5 C -0.182 4.182 6 C -0.108 4.108 7 N -0.223 5.223 8 C -0.027 4.027 9 C -0.227 4.227 10 C -0.086 4.086 11 C -0.269 4.269 12 C 0.073 3.927 13 C -0.516 4.516 14 H 0.072 0.928 15 C -0.165 4.165 16 N -0.476 5.476 17 Si 0.789 3.211 18 H -0.184 1.184 19 H -0.204 1.204 20 H -0.178 1.178 21 C -0.241 4.241 22 C -0.084 4.084 23 C -0.096 4.096 24 H 0.091 0.909 25 H 0.078 0.922 26 H 0.084 0.916 27 H 0.081 0.919 28 H 0.072 0.928 29 H 0.235 0.765 30 H 0.108 0.892 31 H 0.099 0.901 32 H 0.108 0.892 33 H 0.063 0.937 34 H 0.099 0.901 35 H 0.102 0.898 36 H 0.137 0.863 37 H 0.112 0.888 38 H 0.104 0.896 39 H 0.116 0.884 40 H 0.137 0.863 41 H 0.083 0.917 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -8.437 13.179 -6.304 16.870 hybrid contribution -0.006 -1.387 1.181 1.822 sum -8.443 11.791 -5.123 15.381 Atomic orbital electron populations 1.21796 0.93436 1.02733 1.02853 1.22135 0.98251 0.96081 1.01990 1.21783 0.93264 0.90417 0.85076 1.86558 1.28069 1.78641 1.43816 1.23056 0.97496 1.01067 0.96573 1.23232 0.91607 1.01610 0.94355 1.65858 1.02227 1.38385 1.15794 1.21083 0.90972 0.91626 0.99009 1.20081 1.10442 0.97625 0.94504 1.20777 0.97547 0.95094 0.95189 1.21106 1.10683 0.95463 0.99670 1.17862 0.89392 0.92345 0.93084 1.19491 1.44895 0.92912 0.94331 0.92760 1.26796 0.92103 0.98905 0.98741 1.69730 1.36835 1.25574 1.15466 0.85484 0.79098 0.78740 0.77753 1.18405 1.20435 1.17817 1.21185 1.09205 0.97028 0.96679 1.20796 0.96656 0.92475 0.98444 1.23268 0.93937 0.94221 0.98157 0.90896 0.92186 0.91631 0.91909 0.92794 0.76486 0.89171 0.90107 0.89208 0.93725 0.90065 0.89846 0.86311 0.88817 0.89605 0.88369 0.86325 0.91688 0.90830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.67 9.40 71.98 0.68 -1.99 16 2 C -0.15 -3.57 4.99 30.59 0.15 -3.42 16 3 C 0.14 3.40 1.14 -9.90 -0.01 3.39 16 4 O -0.56 -13.29 12.92 -148.98 -1.92 -15.22 16 5 C -0.14 -3.24 5.91 31.49 0.19 -3.05 16 6 C 0.02 0.52 6.32 86.45 0.55 1.06 16 7 N -0.50 -14.44 5.65 -886.03 -5.01 -19.45 16 8 C 0.10 2.97 5.75 85.56 0.49 3.46 16 9 C -0.22 -8.08 3.86 -19.67 -0.08 -8.16 16 10 C -0.07 -2.64 8.00 22.22 0.18 -2.46 16 11 C -0.25 -11.58 7.18 22.73 0.16 -11.42 16 12 C 0.08 3.84 5.10 -21.29 -0.11 3.73 16 13 C -0.49 -27.42 9.57 23.46 0.22 -27.20 16 14 H 0.05 3.30 8.06 -2.91 -0.02 3.28 16 15 C 0.05 2.64 5.40 85.26 0.46 3.10 16 16 N -0.85 -46.81 13.93 21.83 0.30 -46.51 16 17 Si 0.97 42.99 24.52 68.60 1.68 44.67 16 18 H -0.26 -10.86 6.71 99.48 0.67 -10.19 16 19 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 20 H -0.25 -11.59 6.86 99.48 0.68 -10.91 16 21 C -0.22 -10.11 9.80 22.73 0.22 -9.89 16 22 C -0.07 -2.51 7.45 22.22 0.17 -2.34 16 23 C 0.03 0.97 5.26 86.45 0.45 1.42 16 24 H 0.07 1.00 6.88 -2.39 -0.02 0.98 16 25 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.06 1.06 6.59 -2.39 -0.02 1.04 16 27 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.05 1.56 8.12 -2.39 -0.02 1.54 16 29 H 0.39 5.86 7.51 -74.06 -0.56 5.30 16 30 H 0.09 1.74 7.98 -2.38 -0.02 1.72 16 31 H 0.08 1.70 6.49 -2.39 -0.02 1.68 16 32 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.04 1.32 5.25 -2.39 -0.01 1.31 16 34 H 0.08 2.27 8.08 -2.39 -0.02 2.25 16 35 H 0.08 2.24 8.02 -2.39 -0.02 2.22 16 36 H 0.12 3.99 7.52 -2.91 -0.02 3.97 16 37 H 0.09 4.39 4.73 -2.91 -0.01 4.38 16 38 H 0.29 14.51 8.30 -92.70 -0.77 13.74 16 39 H 0.10 4.39 8.06 -2.91 -0.02 4.37 16 40 H 0.12 3.98 8.06 -2.91 -0.02 3.95 16 41 H 0.07 2.24 4.47 -2.39 -0.01 2.23 16 42 H 0.07 2.29 8.08 -2.38 -0.02 2.27 16 Total: -1.00 -60.56 319.46 -0.82 -61.38 By element: Atomic # 1 Polarization: 28.48 SS G_CDS: 0.40 Total: 28.88 kcal Atomic # 6 Polarization: -57.48 SS G_CDS: 3.73 Total: -53.75 kcal Atomic # 7 Polarization: -61.26 SS G_CDS: -4.70 Total: -65.96 kcal Atomic # 8 Polarization: -13.29 SS G_CDS: -1.92 Total: -15.22 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 1.68 Total: 44.67 kcal Total: -60.56 -0.82 -61.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495198028.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.536 kcal (2) G-P(sol) polarization free energy of solvation -60.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds