Wall clock time and date at job start Mon Mar 30 2020 01:54:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35897 * 117.00253 * 2 1 4 4 C 1.38751 * 120.05722 * 0.02562 * 3 2 1 5 5 C 1.38121 * 119.94732 * 179.97438 * 4 3 2 6 6 C 1.38291 * 120.05612 * 359.75351 * 5 4 3 7 7 C 1.38246 * 120.10714 * 0.49956 * 6 5 4 8 8 C 1.50697 * 119.97021 * 179.76572 * 7 6 5 9 9 H 1.08998 * 110.78297 * 163.16127 * 8 7 6 10 10 C 1.54326 * 110.72078 * 39.92678 * 8 7 6 11 11 N 1.47017 * 107.40259 * 219.52007 * 10 8 7 12 12 C 1.36939 * 125.64940 * 178.89762 * 11 10 8 13 13 H 1.08005 * 120.00271 * 179.97438 * 12 11 10 14 14 C 1.38810 * 119.99803 * 359.97223 * 12 11 10 15 15 N 1.31615 * 120.00449 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99995 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47193 * 0.02562 * 16 14 12 18 18 H 1.48497 * 109.47139 * 120.00016 * 16 14 12 19 19 H 1.48500 * 109.47308 * 239.99989 * 16 14 12 20 20 C 1.47421 * 108.70400 * 358.86003 * 11 10 8 21 21 C 1.54910 * 104.83328 * 24.12885 * 20 11 10 22 22 C 1.53000 * 111.00192 * 81.06455 * 21 20 11 23 23 C 1.52991 * 111.00459 * 204.87798 * 21 20 11 24 24 C 1.38161 * 120.05997 * 359.49817 * 7 6 5 25 25 H 1.09007 * 109.47346 * 59.99640 * 1 2 3 26 26 H 1.08998 * 109.47784 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46767 * 300.00149 * 1 2 3 28 28 H 1.08000 * 120.02824 * 0.02562 * 4 3 2 29 29 H 1.08000 * 119.97255 * 180.02562 * 5 4 3 30 30 H 1.07994 * 119.94829 * 180.27233 * 6 5 4 31 31 H 1.09002 * 109.88194 * 100.02268 * 10 8 7 32 32 H 1.09003 * 109.87702 * 339.01306 * 10 8 7 33 33 H 0.96995 * 120.00708 * 180.02562 * 15 14 12 34 34 H 1.09000 * 110.37164 * 142.96981 * 20 11 10 35 35 H 1.09003 * 110.36777 * 265.28997 * 20 11 10 36 36 H 1.08999 * 109.47320 * 63.72306 * 22 21 20 37 37 H 1.08999 * 109.47164 * 183.72274 * 22 21 20 38 38 H 1.09000 * 109.47200 * 303.72326 * 22 21 20 39 39 H 1.08999 * 109.47388 * 58.54529 * 23 21 20 40 40 H 1.09006 * 109.47179 * 178.54800 * 23 21 20 41 41 H 1.09001 * 109.47682 * 298.54699 * 23 21 20 42 42 H 1.08000 * 120.03404 * 180.27362 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3753 0.0005 5 6 1.9209 3.6047 0.0011 6 6 3.3020 3.6757 0.0062 7 6 4.0560 2.5170 0.0004 8 6 5.5608 2.5980 0.0007 9 1 5.9995 1.6434 0.2911 10 6 6.0466 3.7281 0.9327 11 7 7.1806 4.3880 0.2695 12 6 7.8808 5.4571 0.7614 13 1 8.7021 5.8715 0.1954 14 6 7.5350 6.0084 1.9875 15 7 6.5345 5.5033 2.6776 16 14 8.4905 7.4664 2.6589 17 1 9.5596 7.8420 1.6990 18 1 7.5703 8.6163 2.8489 19 1 9.1010 7.1004 3.9622 20 6 7.4398 3.7076 -1.0124 21 6 6.0911 3.0456 -1.3897 22 6 5.1439 4.0596 -2.0343 23 6 6.3091 1.8421 -2.3088 24 6 3.4312 1.2847 -0.0001 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 0.2129 2.3204 0.0014 29 1 1.3341 4.5113 0.0019 30 1 3.7924 4.6379 0.0111 31 1 6.3674 3.3096 1.8867 32 1 5.2427 4.4463 1.0946 33 1 6.2926 5.8888 3.5341 34 1 7.7334 4.4308 -1.7732 35 1 8.2134 2.9495 -0.8899 36 1 5.5721 4.4113 -2.9729 37 1 4.1819 3.5855 -2.2289 38 1 5.0028 4.9045 -1.3602 39 1 6.9515 1.1160 -1.8105 40 1 5.3484 1.3807 -2.5374 41 1 6.7829 2.1720 -3.2334 42 1 4.0206 0.3798 -0.0001 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000528624091.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:40 Heat of formation + Delta-G solvation = 10.157151 kcal Electronic energy + Delta-G solvation = -22061.801250 eV Core-core repulsion = 19007.767929 eV Total energy + Delta-G solvation = -3054.033321 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.14904 -38.77917 -36.61506 -33.52453 -31.40603 -30.62895 -30.28627 -27.69025 -27.19359 -26.66191 -25.48164 -23.65927 -22.14488 -21.43843 -19.74807 -18.53588 -17.10183 -16.66834 -16.01410 -15.77722 -15.64862 -14.76300 -14.48158 -13.90295 -13.77732 -13.43503 -13.28014 -13.11163 -12.61917 -12.39659 -11.96755 -11.90863 -11.73086 -11.61334 -11.42248 -11.22888 -10.95723 -10.82469 -10.78432 -10.64793 -10.38354 -10.03386 -9.90247 -9.80439 -9.72527 -9.54863 -8.57253 -8.34569 -7.81299 -6.75814 -5.66818 -2.99601 1.66808 1.80905 3.37985 3.42118 3.47915 3.50166 4.10265 4.53501 4.94105 5.06645 5.09265 5.18735 5.22841 5.35066 5.39105 5.40286 5.58273 5.63138 5.68156 5.76892 5.80937 5.94146 6.07264 6.13617 6.17928 6.25955 6.32745 6.38012 6.43440 6.49839 6.57749 6.70838 6.74695 6.84973 6.87757 7.03223 7.08067 7.19210 7.60702 7.62593 7.68420 7.88549 8.30437 9.26723 9.87238 10.54215 11.44756 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.022986 B = 0.005214 C = 0.004619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.847871 B = 5369.157823 C = 6060.310333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.322 6.322 3 C 0.116 3.884 4 C -0.220 4.220 5 C -0.086 4.086 6 C -0.136 4.136 7 C -0.008 4.008 8 C -0.076 4.076 9 H 0.074 0.926 10 C 0.185 3.815 11 N -0.605 5.605 12 C -0.225 4.225 13 H 0.078 0.922 14 C -0.008 4.008 15 N -0.921 5.921 16 Si 0.909 3.091 17 H -0.280 1.280 18 H -0.291 1.291 19 H -0.291 1.291 20 C 0.144 3.856 21 C -0.068 4.068 22 C -0.130 4.130 23 C -0.132 4.132 24 C -0.152 4.152 25 H 0.052 0.948 26 H 0.094 0.906 27 H 0.052 0.948 28 H 0.119 0.881 29 H 0.119 0.881 30 H 0.136 0.864 31 H 0.041 0.959 32 H 0.058 0.942 33 H 0.251 0.749 34 H 0.039 0.961 35 H 0.018 0.982 36 H 0.044 0.956 37 H 0.050 0.950 38 H 0.067 0.933 39 H 0.052 0.948 40 H 0.050 0.950 41 H 0.051 0.949 42 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.577 -8.472 -7.812 15.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.236 6.236 3 C 0.072 3.928 4 C -0.239 4.239 5 C -0.104 4.104 6 C -0.153 4.153 7 C -0.009 4.009 8 C -0.096 4.096 9 H 0.093 0.907 10 C 0.061 3.939 11 N -0.331 5.331 12 C -0.353 4.353 13 H 0.096 0.904 14 C -0.205 4.205 15 N -0.569 5.569 16 Si 0.740 3.260 17 H -0.206 1.206 18 H -0.219 1.219 19 H -0.218 1.218 20 C 0.018 3.982 21 C -0.069 4.069 22 C -0.187 4.187 23 C -0.190 4.190 24 C -0.171 4.171 25 H 0.070 0.930 26 H 0.113 0.887 27 H 0.071 0.929 28 H 0.137 0.863 29 H 0.137 0.863 30 H 0.154 0.846 31 H 0.059 0.941 32 H 0.076 0.924 33 H 0.062 0.938 34 H 0.057 0.943 35 H 0.036 0.964 36 H 0.063 0.937 37 H 0.069 0.931 38 H 0.086 0.914 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.070 0.930 42 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -10.482 -8.516 -7.617 15.506 hybrid contribution 0.148 0.869 0.543 1.035 sum -10.334 -7.647 -7.074 14.674 Atomic orbital electron populations 1.22962 0.79080 1.03323 1.01144 1.86034 1.20829 1.27483 1.89264 1.18928 0.92231 0.83764 0.97903 1.21068 0.99299 0.92573 1.10955 1.20897 0.94745 0.96607 0.98197 1.21296 0.93185 0.99374 1.01488 1.19576 0.95519 0.91654 0.94103 1.21684 0.89592 1.01171 0.97113 0.90739 1.21310 0.90497 0.90226 0.91904 1.44443 1.36053 1.34814 1.17772 1.19106 1.10218 1.04673 1.01303 0.90437 1.24772 0.98665 0.99676 0.97340 1.69958 1.29808 1.42576 1.14597 0.86082 0.78985 0.82215 0.78729 1.20576 1.21852 1.21842 1.21644 0.93057 0.94375 0.89163 1.21716 0.96738 0.95075 0.93405 1.21847 0.97990 0.99129 0.99746 1.21717 1.00969 0.97363 0.98941 1.20268 0.90941 0.98209 1.07654 0.92982 0.88730 0.92893 0.86302 0.86262 0.84649 0.94126 0.92406 0.93842 0.94291 0.96426 0.93685 0.93146 0.91380 0.92859 0.93042 0.93026 0.85798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.81 101.05 0.99 1.27 16 2 O -0.32 -4.45 10.50 -19.42 -0.20 -4.66 16 3 C 0.12 1.77 6.69 -39.21 -0.26 1.51 16 4 C -0.22 -3.11 9.04 -39.43 -0.36 -3.46 16 5 C -0.09 -1.30 10.04 -39.61 -0.40 -1.70 16 6 C -0.14 -2.36 6.59 -39.56 -0.26 -2.62 16 7 C -0.01 -0.14 4.29 -104.65 -0.45 -0.59 16 8 C -0.08 -1.46 2.57 -89.81 -0.23 -1.69 16 9 H 0.07 1.39 7.91 -51.93 -0.41 0.98 16 10 C 0.19 4.47 4.46 -3.07 -0.01 4.45 16 11 N -0.60 -15.33 3.38 -170.07 -0.58 -15.91 16 12 C -0.22 -6.24 10.28 -15.06 -0.15 -6.39 16 13 H 0.08 2.09 7.83 -52.48 -0.41 1.68 16 14 C -0.01 -0.24 5.49 -17.43 -0.10 -0.33 16 15 N -0.92 -26.99 10.31 55.49 0.57 -26.42 16 16 Si 0.91 22.16 29.55 -169.99 -5.02 17.13 16 17 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 18 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 19 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 20 C 0.14 3.00 6.17 -2.53 -0.02 2.98 16 21 C -0.07 -1.21 0.78 -152.23 -0.12 -1.32 16 22 C -0.13 -2.21 7.07 37.16 0.26 -1.95 16 23 C -0.13 -1.93 8.67 37.15 0.32 -1.61 16 24 C -0.15 -2.49 9.63 -39.43 -0.38 -2.87 16 25 H 0.05 0.43 7.66 -51.93 -0.40 0.03 16 26 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.05 0.45 7.66 -51.93 -0.40 0.06 16 28 H 0.12 1.35 6.30 -52.49 -0.33 1.02 16 29 H 0.12 1.53 8.06 -52.49 -0.42 1.10 16 30 H 0.14 2.59 5.03 -52.49 -0.26 2.33 16 31 H 0.04 1.11 7.51 -51.93 -0.39 0.72 16 32 H 0.06 1.50 5.00 -51.93 -0.26 1.24 16 33 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 34 H 0.04 0.80 8.05 -51.93 -0.42 0.38 16 35 H 0.02 0.37 8.04 -51.93 -0.42 -0.04 16 36 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.05 0.80 6.59 -51.93 -0.34 0.46 16 38 H 0.07 1.31 6.20 -51.93 -0.32 0.99 16 39 H 0.05 0.75 8.12 -51.93 -0.42 0.33 16 40 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.12 1.90 8.04 -52.49 -0.42 1.48 16 LS Contribution 325.49 15.07 4.91 4.91 Total: -1.00 -30.43 325.49 -7.94 -38.37 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -6.45 Total: 0.90 kcal Atomic # 6 Polarization: -13.16 SS G_CDS: -1.16 Total: -14.32 kcal Atomic # 7 Polarization: -42.32 SS G_CDS: 0.00 Total: -42.33 kcal Atomic # 8 Polarization: -4.45 SS G_CDS: -0.20 Total: -4.66 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.43 -7.94 -38.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528624091.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.523 kcal (2) G-P(sol) polarization free energy of solvation -30.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds