Wall clock time and date at job start Mon Mar 30 2020 01:54:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35897 * 117.00253 * 2 1 4 4 C 1.38751 * 120.05722 * 0.02562 * 3 2 1 5 5 C 1.38121 * 119.94732 * 179.97438 * 4 3 2 6 6 C 1.38291 * 120.05612 * 359.75351 * 5 4 3 7 7 C 1.38246 * 120.10714 * 0.49956 * 6 5 4 8 8 C 1.50697 * 119.97021 * 179.76572 * 7 6 5 9 9 H 1.08998 * 110.78297 * 163.16127 * 8 7 6 10 10 C 1.54326 * 110.72078 * 39.92678 * 8 7 6 11 11 N 1.47017 * 107.40259 * 219.52007 * 10 8 7 12 12 C 1.36939 * 125.64940 * 178.89762 * 11 10 8 13 13 H 1.08005 * 120.00271 * 179.97438 * 12 11 10 14 14 C 1.38810 * 119.99803 * 359.97223 * 12 11 10 15 15 N 1.31615 * 120.00449 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99995 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47193 * 0.02562 * 16 14 12 18 18 H 1.48497 * 109.47139 * 120.00016 * 16 14 12 19 19 H 1.48500 * 109.47308 * 239.99989 * 16 14 12 20 20 C 1.47421 * 108.70400 * 358.86003 * 11 10 8 21 21 C 1.54910 * 104.83328 * 24.12885 * 20 11 10 22 22 C 1.53000 * 111.00192 * 81.06455 * 21 20 11 23 23 C 1.52991 * 111.00459 * 204.87798 * 21 20 11 24 24 C 1.38161 * 120.05997 * 359.49817 * 7 6 5 25 25 H 1.09007 * 109.47346 * 59.99640 * 1 2 3 26 26 H 1.08998 * 109.47784 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46767 * 300.00149 * 1 2 3 28 28 H 1.08000 * 120.02824 * 0.02562 * 4 3 2 29 29 H 1.08000 * 119.97255 * 180.02562 * 5 4 3 30 30 H 1.07994 * 119.94829 * 180.27233 * 6 5 4 31 31 H 1.09002 * 109.88194 * 100.02268 * 10 8 7 32 32 H 1.09003 * 109.87702 * 339.01306 * 10 8 7 33 33 H 0.96995 * 120.00708 * 180.02562 * 15 14 12 34 34 H 1.09000 * 110.37164 * 142.96981 * 20 11 10 35 35 H 1.09003 * 110.36777 * 265.28997 * 20 11 10 36 36 H 1.08999 * 109.47320 * 63.72306 * 22 21 20 37 37 H 1.08999 * 109.47164 * 183.72274 * 22 21 20 38 38 H 1.09000 * 109.47200 * 303.72326 * 22 21 20 39 39 H 1.08999 * 109.47388 * 58.54529 * 23 21 20 40 40 H 1.09006 * 109.47179 * 178.54800 * 23 21 20 41 41 H 1.09001 * 109.47682 * 298.54699 * 23 21 20 42 42 H 1.08000 * 120.03404 * 180.27362 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3753 0.0005 5 6 1.9209 3.6047 0.0011 6 6 3.3020 3.6757 0.0062 7 6 4.0560 2.5170 0.0004 8 6 5.5608 2.5980 0.0007 9 1 5.9995 1.6434 0.2911 10 6 6.0466 3.7281 0.9327 11 7 7.1806 4.3880 0.2695 12 6 7.8808 5.4571 0.7614 13 1 8.7021 5.8715 0.1954 14 6 7.5350 6.0084 1.9875 15 7 6.5345 5.5033 2.6776 16 14 8.4905 7.4664 2.6589 17 1 9.5596 7.8420 1.6990 18 1 7.5703 8.6163 2.8489 19 1 9.1010 7.1004 3.9622 20 6 7.4398 3.7076 -1.0124 21 6 6.0911 3.0456 -1.3897 22 6 5.1439 4.0596 -2.0343 23 6 6.3091 1.8421 -2.3088 24 6 3.4312 1.2847 -0.0001 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 0.2129 2.3204 0.0014 29 1 1.3341 4.5113 0.0019 30 1 3.7924 4.6379 0.0111 31 1 6.3674 3.3096 1.8867 32 1 5.2427 4.4463 1.0946 33 1 6.2926 5.8888 3.5341 34 1 7.7334 4.4308 -1.7732 35 1 8.2134 2.9495 -0.8899 36 1 5.5721 4.4113 -2.9729 37 1 4.1819 3.5855 -2.2289 38 1 5.0028 4.9045 -1.3602 39 1 6.9515 1.1160 -1.8105 40 1 5.3484 1.3807 -2.5374 41 1 6.7829 2.1720 -3.2334 42 1 4.0206 0.3798 -0.0001 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000528624091.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:39 Heat of formation + Delta-G solvation = -6.757910 kcal Electronic energy + Delta-G solvation = -22062.534743 eV Core-core repulsion = 19007.767929 eV Total energy + Delta-G solvation = -3054.766814 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.41922 -40.11220 -37.90772 -35.38918 -32.78000 -32.52695 -31.48881 -29.21166 -28.28810 -27.82626 -27.29529 -25.33353 -23.37447 -22.98597 -21.32432 -19.95462 -18.66962 -18.33967 -17.18252 -17.07328 -16.59419 -16.55885 -16.03159 -15.62099 -15.19320 -14.86669 -14.49919 -14.46117 -14.02987 -13.57656 -13.53044 -13.30254 -13.19008 -13.02107 -12.86735 -12.79710 -12.66865 -12.47445 -12.07981 -11.95946 -11.81270 -11.73978 -11.71121 -11.35090 -11.29303 -11.21800 -10.67507 -9.62939 -9.02429 -8.82722 -7.81623 -5.16559 0.43936 0.57649 1.45969 1.46689 1.57054 2.41778 2.51278 2.85582 3.36269 3.63105 3.81122 3.88742 3.97129 4.07182 4.16013 4.32881 4.38436 4.45060 4.46773 4.50889 4.57656 4.68792 4.69644 4.77737 4.86374 4.90300 4.92337 5.01440 5.10636 5.17917 5.22635 5.27561 5.37100 5.41899 5.49886 5.58291 5.61626 5.65282 5.83312 5.89386 5.90931 6.23236 6.54111 7.13314 7.81113 8.46982 9.28579 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.022986 B = 0.005214 C = 0.004619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.847871 B = 5369.157823 C = 6060.310333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.335 6.335 3 C 0.118 3.882 4 C -0.211 4.211 5 C -0.085 4.085 6 C -0.154 4.154 7 C -0.021 4.021 8 C -0.065 4.065 9 H 0.077 0.923 10 C 0.198 3.802 11 N -0.625 5.625 12 C -0.238 4.238 13 H 0.082 0.918 14 C -0.065 4.065 15 N -0.950 5.950 16 Si 0.975 3.025 17 H -0.266 1.266 18 H -0.292 1.292 19 H -0.294 1.294 20 C 0.137 3.863 21 C -0.059 4.059 22 C -0.121 4.121 23 C -0.125 4.125 24 C -0.161 4.161 25 H 0.066 0.934 26 H 0.119 0.881 27 H 0.061 0.939 28 H 0.153 0.847 29 H 0.141 0.859 30 H 0.108 0.892 31 H -0.007 1.007 32 H 0.032 0.968 33 H 0.245 0.755 34 H 0.043 0.957 35 H 0.022 0.978 36 H 0.060 0.940 37 H 0.062 0.938 38 H 0.036 0.964 39 H 0.057 0.943 40 H 0.063 0.937 41 H 0.069 0.931 42 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.016 -9.503 -9.428 17.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.249 6.249 3 C 0.073 3.927 4 C -0.230 4.230 5 C -0.103 4.103 6 C -0.172 4.172 7 C -0.021 4.021 8 C -0.084 4.084 9 H 0.095 0.905 10 C 0.073 3.927 11 N -0.350 5.350 12 C -0.367 4.367 13 H 0.100 0.900 14 C -0.257 4.257 15 N -0.600 5.600 16 Si 0.804 3.196 17 H -0.190 1.190 18 H -0.219 1.219 19 H -0.221 1.221 20 C 0.012 3.988 21 C -0.059 4.059 22 C -0.178 4.178 23 C -0.182 4.182 24 C -0.180 4.180 25 H 0.084 0.916 26 H 0.137 0.863 27 H 0.080 0.920 28 H 0.170 0.830 29 H 0.159 0.841 30 H 0.126 0.874 31 H 0.011 0.989 32 H 0.050 0.950 33 H 0.054 0.946 34 H 0.061 0.939 35 H 0.040 0.960 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.055 0.945 39 H 0.076 0.924 40 H 0.082 0.918 41 H 0.088 0.912 42 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -11.917 -9.566 -9.271 17.874 hybrid contribution 0.516 1.131 1.047 1.625 sum -11.400 -8.435 -8.224 16.394 Atomic orbital electron populations 1.23329 0.76555 1.05473 1.02208 1.86028 1.23409 1.26630 1.88874 1.19002 0.92004 0.84822 0.96890 1.21389 1.00951 0.91513 1.09109 1.21132 0.93757 0.98196 0.97193 1.21139 0.94484 0.98122 1.03499 1.19372 0.94305 0.92489 0.95939 1.21474 0.91191 0.98952 0.96780 0.90495 1.20988 0.89394 0.90970 0.91321 1.44729 1.36133 1.34670 1.19518 1.19495 1.10372 1.05343 1.01537 0.90046 1.25592 0.99843 1.02495 0.97820 1.70197 1.31349 1.43852 1.14576 0.85051 0.77876 0.78818 0.77861 1.19004 1.21932 1.22143 1.21858 0.95146 0.94380 0.87370 1.21695 0.94617 0.96304 0.93323 1.21747 0.98607 0.97935 0.99488 1.21658 1.02028 0.95766 0.98756 1.20310 0.92010 0.97685 1.07984 0.91569 0.86276 0.92034 0.82974 0.84118 0.87447 0.98878 0.94971 0.94557 0.93901 0.96037 0.92098 0.91899 0.94465 0.92383 0.91756 0.91209 0.85137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.81 113.37 1.11 1.39 16 2 O -0.34 -8.31 10.50 -92.39 -0.97 -9.28 16 3 C 0.12 3.33 6.69 22.51 0.15 3.48 16 4 C -0.21 -5.37 9.04 22.36 0.20 -5.17 16 5 C -0.08 -2.44 10.04 22.25 0.22 -2.22 16 6 C -0.15 -5.48 6.59 22.28 0.15 -5.33 16 7 C -0.02 -0.73 4.29 -19.88 -0.09 -0.82 16 8 C -0.06 -2.54 2.57 -10.27 -0.03 -2.56 16 9 H 0.08 2.92 7.91 -2.39 -0.02 2.90 16 10 C 0.20 10.14 4.46 86.73 0.39 10.52 16 11 N -0.62 -32.91 3.38 -691.99 -2.34 -35.25 16 12 C -0.24 -13.65 10.28 84.03 0.86 -12.79 16 13 H 0.08 4.46 7.83 -2.91 -0.02 4.44 16 14 C -0.06 -3.75 5.49 84.86 0.47 -3.29 16 15 N -0.95 -58.46 10.31 21.65 0.22 -58.24 16 16 Si 0.98 46.71 29.55 68.60 2.03 48.74 16 17 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 18 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 19 H -0.29 -14.13 7.11 99.48 0.71 -13.43 16 20 C 0.14 5.77 6.17 86.86 0.54 6.31 16 21 C -0.06 -2.04 0.78 -50.71 -0.04 -2.08 16 22 C -0.12 -4.05 7.07 71.98 0.51 -3.54 16 23 C -0.12 -3.34 8.67 71.98 0.62 -2.71 16 24 C -0.16 -5.11 9.63 22.37 0.22 -4.89 16 25 H 0.07 0.81 7.66 -2.38 -0.02 0.79 16 26 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.06 0.82 7.66 -2.39 -0.02 0.80 16 28 H 0.15 2.81 6.30 -2.91 -0.02 2.79 16 29 H 0.14 3.35 8.06 -2.91 -0.02 3.33 16 30 H 0.11 4.41 5.03 -2.91 -0.01 4.39 16 31 H -0.01 -0.42 7.51 -2.39 -0.02 -0.43 16 32 H 0.03 1.80 5.00 -2.39 -0.01 1.79 16 33 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 34 H 0.04 1.75 8.05 -2.39 -0.02 1.73 16 35 H 0.02 0.90 8.04 -2.39 -0.02 0.88 16 36 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.06 1.94 6.59 -2.39 -0.02 1.92 16 38 H 0.04 1.47 6.20 -2.39 -0.01 1.45 16 39 H 0.06 1.51 8.12 -2.39 -0.02 1.49 16 40 H 0.06 1.59 8.14 -2.38 -0.02 1.57 16 41 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.13 3.86 8.04 -2.91 -0.02 3.83 16 Total: -1.00 -68.68 325.49 5.22 -63.46 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: 1.00 Total: 14.26 kcal Atomic # 6 Polarization: -28.98 SS G_CDS: 5.28 Total: -23.69 kcal Atomic # 7 Polarization: -91.37 SS G_CDS: -2.12 Total: -93.49 kcal Atomic # 8 Polarization: -8.31 SS G_CDS: -0.97 Total: -9.28 kcal Atomic # 14 Polarization: 46.71 SS G_CDS: 2.03 Total: 48.74 kcal Total: -68.68 5.22 -63.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528624091.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.704 kcal (2) G-P(sol) polarization free energy of solvation -68.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds