Wall clock time and date at job start Mon Mar 30 2020 01:54:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35899 * 117.00209 * 2 1 4 4 C 1.38747 * 120.05384 * 0.02562 * 3 2 1 5 5 C 1.38132 * 119.94373 * 179.97438 * 4 3 2 6 6 C 1.38289 * 120.05106 * 359.73823 * 5 4 3 7 7 C 1.38244 * 120.11222 * 0.51767 * 6 5 4 8 8 C 1.50704 * 119.97033 * 179.76310 * 7 6 5 9 9 H 1.08996 * 110.30536 * 13.53217 * 8 7 6 10 10 C 1.54393 * 110.42897 * 135.76635 * 8 7 6 11 11 N 1.48143 * 104.61208 * 142.78402 * 10 8 7 12 12 C 1.36948 * 127.83743 * 140.41579 * 11 10 8 13 13 H 1.08001 * 119.99507 * 343.89628 * 12 11 10 14 14 C 1.38805 * 119.99914 * 163.89763 * 12 11 10 15 15 N 1.31613 * 120.00177 * 351.06544 * 14 12 11 16 16 Si 1.86800 * 119.99671 * 171.07022 * 14 12 11 17 17 H 1.48500 * 109.47493 * 94.97611 * 16 14 12 18 18 H 1.48501 * 109.47202 * 214.97757 * 16 14 12 19 19 H 1.48497 * 109.47125 * 334.97773 * 16 14 12 20 20 C 1.48315 * 104.39685 * 320.46962 * 11 10 8 21 21 C 1.54285 * 110.34055 * 251.35491 * 8 7 6 22 22 C 1.52991 * 110.34615 * 359.89751 * 21 8 7 23 23 C 1.53007 * 110.33979 * 122.05067 * 21 8 7 24 24 C 1.38164 * 120.05731 * 359.48347 * 7 6 5 25 25 H 1.09001 * 109.47188 * 300.00410 * 1 2 3 26 26 H 1.09001 * 109.46930 * 59.99958 * 1 2 3 27 27 H 1.08994 * 109.47707 * 179.97438 * 1 2 3 28 28 H 1.08003 * 120.03499 * 359.97438 * 4 3 2 29 29 H 1.07999 * 119.97282 * 179.97438 * 5 4 3 30 30 H 1.07999 * 119.94178 * 180.27567 * 6 5 4 31 31 H 1.08994 * 110.40315 * 261.56463 * 10 8 7 32 32 H 1.08997 * 110.40469 * 23.99690 * 10 8 7 33 33 H 0.97006 * 119.99783 * 180.02562 * 15 14 12 34 34 H 1.08996 * 110.38021 * 280.74074 * 20 11 10 35 35 H 1.08990 * 110.50820 * 158.25247 * 20 11 10 36 36 H 1.08999 * 109.47270 * 175.31869 * 22 21 8 37 37 H 1.09006 * 109.46995 * 295.31603 * 22 21 8 38 38 H 1.09001 * 109.47543 * 55.31243 * 22 21 8 39 39 H 1.08994 * 109.46771 * 298.52039 * 23 21 8 40 40 H 1.08998 * 109.46874 * 58.52396 * 23 21 8 41 41 H 1.08996 * 109.46695 * 178.52406 * 23 21 8 42 42 H 1.08001 * 120.03090 * 180.27720 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3752 0.0005 5 6 1.9210 3.6048 0.0011 6 6 3.3021 3.6757 0.0065 7 6 4.0561 2.5170 0.0007 8 6 5.5609 2.5980 0.0013 9 1 5.8851 3.6095 0.2457 10 6 6.1547 1.5866 1.0054 11 7 7.3839 1.0851 0.3481 12 6 8.5958 0.8159 0.9264 13 1 8.8226 1.2019 1.9093 14 6 9.5323 0.0471 0.2494 15 7 9.1971 -0.5684 -0.8646 16 14 11.2685 -0.1141 0.9196 17 1 11.3703 -1.3484 1.7390 18 1 12.2301 -0.1889 -0.2096 19 1 11.5855 1.0669 1.7622 20 6 7.0065 0.9413 -1.0790 21 6 6.1215 2.1720 -1.3716 22 6 4.9804 1.7937 -2.3179 23 6 6.9610 3.2993 -1.9762 24 6 3.4312 1.2847 0.0001 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 0.2129 2.3204 0.0005 29 1 1.3341 4.5114 0.0011 30 1 3.7924 4.6379 0.0115 31 1 6.4010 2.0831 1.9440 32 1 5.4556 0.7686 1.1792 33 1 9.8516 -1.1060 -1.3375 34 1 6.4414 0.0219 -1.2314 35 1 7.8940 0.9524 -1.7116 36 1 5.3852 1.5756 -3.3062 37 1 4.4664 0.9127 -1.9333 38 1 4.2766 2.6230 -2.3883 39 1 6.3337 4.1773 -2.1296 40 1 7.7763 3.5493 -1.2974 41 1 7.3710 2.9741 -2.9324 42 1 4.0207 0.3797 0.0001 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000528624092.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:44 Heat of formation + Delta-G solvation = 10.337287 kcal Electronic energy + Delta-G solvation = -22054.696618 eV Core-core repulsion = 19000.671108 eV Total energy + Delta-G solvation = -3054.025510 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.28679 -38.71141 -36.66984 -33.40691 -31.50947 -30.87126 -30.24979 -27.58926 -27.17087 -26.41560 -25.54609 -23.72284 -22.32403 -21.30748 -20.06966 -18.33484 -17.20877 -16.75571 -16.08801 -15.76945 -15.67863 -14.66056 -14.39955 -14.13871 -13.62181 -13.53310 -13.23696 -13.02569 -12.70878 -12.36789 -12.31814 -11.86835 -11.77519 -11.58155 -11.39100 -11.07722 -10.95504 -10.89430 -10.76267 -10.60514 -10.41647 -9.99228 -9.93092 -9.73751 -9.73666 -9.39875 -8.58192 -8.38801 -7.99246 -6.75290 -5.72331 -3.06175 1.55317 1.66503 3.35945 3.41464 3.47318 3.49211 3.97347 4.51672 4.87746 4.95817 5.07632 5.08883 5.23257 5.37941 5.38807 5.46731 5.52973 5.58062 5.73122 5.77028 5.80105 5.86857 6.06718 6.14791 6.21618 6.29736 6.32624 6.43080 6.50539 6.58473 6.61831 6.70121 6.75521 6.85063 6.87229 6.99266 7.03459 7.17440 7.46187 7.55707 7.64902 7.81298 8.29382 9.18372 9.81414 10.59954 11.41548 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.025510 B = 0.004897 C = 0.004596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.353386 B = 5716.206419 C = 6091.016673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.318 6.318 3 C 0.122 3.878 4 C -0.223 4.223 5 C -0.085 4.085 6 C -0.159 4.159 7 C -0.008 4.008 8 C -0.063 4.063 9 H 0.076 0.924 10 C 0.132 3.868 11 N -0.595 5.595 12 C -0.224 4.224 13 H 0.074 0.926 14 C -0.005 4.005 15 N -0.915 5.915 16 Si 0.908 3.092 17 H -0.289 1.289 18 H -0.290 1.290 19 H -0.280 1.280 20 C 0.169 3.831 21 C -0.081 4.081 22 C -0.135 4.135 23 C -0.124 4.124 24 C -0.139 4.139 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.096 0.904 28 H 0.120 0.880 29 H 0.118 0.882 30 H 0.119 0.881 31 H 0.045 0.955 32 H 0.029 0.971 33 H 0.253 0.747 34 H 0.020 0.980 35 H 0.085 0.915 36 H 0.046 0.954 37 H 0.058 0.942 38 H 0.045 0.955 39 H 0.039 0.961 40 H 0.058 0.942 41 H 0.049 0.951 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.060 6.772 -0.832 17.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.231 6.231 3 C 0.078 3.922 4 C -0.241 4.241 5 C -0.103 4.103 6 C -0.178 4.178 7 C -0.008 4.008 8 C -0.083 4.083 9 H 0.095 0.905 10 C 0.005 3.995 11 N -0.318 5.318 12 C -0.352 4.352 13 H 0.092 0.908 14 C -0.202 4.202 15 N -0.561 5.561 16 Si 0.739 3.261 17 H -0.216 1.216 18 H -0.217 1.217 19 H -0.206 1.206 20 C 0.043 3.957 21 C -0.083 4.083 22 C -0.192 4.192 23 C -0.182 4.182 24 C -0.158 4.158 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.114 0.886 28 H 0.138 0.862 29 H 0.136 0.864 30 H 0.137 0.863 31 H 0.063 0.937 32 H 0.046 0.954 33 H 0.063 0.937 34 H 0.038 0.962 35 H 0.103 0.897 36 H 0.065 0.935 37 H 0.077 0.923 38 H 0.064 0.936 39 H 0.058 0.942 40 H 0.077 0.923 41 H 0.068 0.932 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -15.722 6.442 -0.855 17.012 hybrid contribution 0.510 0.000 0.287 0.585 sum -15.212 6.441 -0.567 16.530 Atomic orbital electron populations 1.22983 0.79017 1.03542 1.01002 1.86098 1.20846 1.27261 1.88931 1.19008 0.92305 0.83875 0.97038 1.21076 0.99405 0.92544 1.11108 1.20802 0.94528 0.96587 0.98360 1.20952 0.93497 0.98048 1.05265 1.19690 0.95793 0.91745 0.93593 1.21380 0.88531 1.00747 0.97613 0.90538 1.21809 0.89642 0.94025 0.94033 1.44963 1.06742 1.76576 1.03494 1.18986 0.89252 1.25619 1.01357 0.90784 1.24861 0.98985 0.98099 0.98255 1.69913 1.33424 1.34471 1.18297 0.86162 0.84389 0.77798 0.77777 1.21616 1.21655 1.20567 1.21672 0.96394 0.90782 0.86807 1.21726 0.95492 0.98425 0.92607 1.22022 0.97663 1.00792 0.98763 1.21730 0.99291 0.96755 1.00404 1.20416 0.90832 0.99072 1.05437 0.92951 0.92952 0.88565 0.86200 0.86407 0.86288 0.93651 0.95382 0.93714 0.96192 0.89666 0.93459 0.92267 0.93582 0.94241 0.92264 0.93204 0.84671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.81 101.05 0.99 1.27 16 2 O -0.32 -4.54 10.50 -19.42 -0.20 -4.74 16 3 C 0.12 1.83 6.69 -39.22 -0.26 1.57 16 4 C -0.22 -2.83 9.04 -39.43 -0.36 -3.19 16 5 C -0.08 -1.05 10.04 -39.60 -0.40 -1.44 16 6 C -0.16 -2.21 9.58 -39.56 -0.38 -2.59 16 7 C -0.01 -0.12 3.25 -104.65 -0.34 -0.46 16 8 C -0.06 -1.13 2.93 -90.37 -0.26 -1.40 16 9 H 0.08 1.33 7.55 -51.93 -0.39 0.94 16 10 C 0.13 2.81 6.65 -2.41 -0.02 2.79 16 11 N -0.59 -15.23 3.38 -168.73 -0.57 -15.80 16 12 C -0.22 -6.26 10.35 -15.06 -0.16 -6.41 16 13 H 0.07 2.01 7.84 -52.49 -0.41 1.60 16 14 C -0.01 -0.14 5.40 -17.44 -0.09 -0.24 16 15 N -0.91 -26.98 10.89 55.49 0.60 -26.38 16 16 Si 0.91 22.10 29.56 -169.99 -5.03 17.08 16 17 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 18 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 C 0.17 4.07 4.98 -2.31 -0.01 4.06 16 21 C -0.08 -1.54 1.02 -153.11 -0.16 -1.69 16 22 C -0.14 -2.30 7.20 37.15 0.27 -2.03 16 23 C -0.12 -2.21 8.23 37.16 0.31 -1.90 16 24 C -0.14 -2.31 6.45 -39.43 -0.25 -2.57 16 25 H 0.05 0.43 7.66 -51.93 -0.40 0.03 16 26 H 0.05 0.43 7.66 -51.93 -0.40 0.03 16 27 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.12 1.21 6.30 -52.48 -0.33 0.88 16 29 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 30 H 0.12 1.47 8.01 -52.49 -0.42 1.05 16 31 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.03 0.61 6.02 -51.93 -0.31 0.30 16 33 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 34 H 0.02 0.52 7.76 -51.93 -0.40 0.11 16 35 H 0.09 2.30 6.28 -51.93 -0.33 1.97 16 36 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.06 1.04 5.60 -51.93 -0.29 0.75 16 38 H 0.05 0.73 7.21 -51.93 -0.37 0.35 16 39 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 41 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.14 2.49 6.51 -52.49 -0.34 2.15 16 LS Contribution 326.90 15.07 4.93 4.93 Total: -1.00 -30.60 326.90 -7.89 -38.48 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -6.49 Total: 0.68 kcal Atomic # 6 Polarization: -13.12 SS G_CDS: -1.12 Total: -14.24 kcal Atomic # 7 Polarization: -42.21 SS G_CDS: 0.03 Total: -42.18 kcal Atomic # 8 Polarization: -4.54 SS G_CDS: -0.20 Total: -4.74 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.03 Total: 17.08 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.60 -7.89 -38.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528624092.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.820 kcal (2) G-P(sol) polarization free energy of solvation -30.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds