Wall clock time and date at job start Mon Mar 30 2020 01:54:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35899 * 117.00209 * 2 1 4 4 C 1.38747 * 120.05384 * 0.02562 * 3 2 1 5 5 C 1.38132 * 119.94373 * 179.97438 * 4 3 2 6 6 C 1.38289 * 120.05106 * 359.73823 * 5 4 3 7 7 C 1.38244 * 120.11222 * 0.51767 * 6 5 4 8 8 C 1.50704 * 119.97033 * 179.76310 * 7 6 5 9 9 H 1.08996 * 110.30536 * 13.53217 * 8 7 6 10 10 C 1.54393 * 110.42897 * 135.76635 * 8 7 6 11 11 N 1.48143 * 104.61208 * 142.78402 * 10 8 7 12 12 C 1.36948 * 127.83743 * 140.41579 * 11 10 8 13 13 H 1.08001 * 119.99507 * 343.89628 * 12 11 10 14 14 C 1.38805 * 119.99914 * 163.89763 * 12 11 10 15 15 N 1.31613 * 120.00177 * 351.06544 * 14 12 11 16 16 Si 1.86800 * 119.99671 * 171.07022 * 14 12 11 17 17 H 1.48500 * 109.47493 * 94.97611 * 16 14 12 18 18 H 1.48501 * 109.47202 * 214.97757 * 16 14 12 19 19 H 1.48497 * 109.47125 * 334.97773 * 16 14 12 20 20 C 1.48315 * 104.39685 * 320.46962 * 11 10 8 21 21 C 1.54285 * 110.34055 * 251.35491 * 8 7 6 22 22 C 1.52991 * 110.34615 * 359.89751 * 21 8 7 23 23 C 1.53007 * 110.33979 * 122.05067 * 21 8 7 24 24 C 1.38164 * 120.05731 * 359.48347 * 7 6 5 25 25 H 1.09001 * 109.47188 * 300.00410 * 1 2 3 26 26 H 1.09001 * 109.46930 * 59.99958 * 1 2 3 27 27 H 1.08994 * 109.47707 * 179.97438 * 1 2 3 28 28 H 1.08003 * 120.03499 * 359.97438 * 4 3 2 29 29 H 1.07999 * 119.97282 * 179.97438 * 5 4 3 30 30 H 1.07999 * 119.94178 * 180.27567 * 6 5 4 31 31 H 1.08994 * 110.40315 * 261.56463 * 10 8 7 32 32 H 1.08997 * 110.40469 * 23.99690 * 10 8 7 33 33 H 0.97006 * 119.99783 * 180.02562 * 15 14 12 34 34 H 1.08996 * 110.38021 * 280.74074 * 20 11 10 35 35 H 1.08990 * 110.50820 * 158.25247 * 20 11 10 36 36 H 1.08999 * 109.47270 * 175.31869 * 22 21 8 37 37 H 1.09006 * 109.46995 * 295.31603 * 22 21 8 38 38 H 1.09001 * 109.47543 * 55.31243 * 22 21 8 39 39 H 1.08994 * 109.46771 * 298.52039 * 23 21 8 40 40 H 1.08998 * 109.46874 * 58.52396 * 23 21 8 41 41 H 1.08996 * 109.46695 * 178.52406 * 23 21 8 42 42 H 1.08001 * 120.03090 * 180.27720 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3752 0.0005 5 6 1.9210 3.6048 0.0011 6 6 3.3021 3.6757 0.0065 7 6 4.0561 2.5170 0.0007 8 6 5.5609 2.5980 0.0013 9 1 5.8851 3.6095 0.2457 10 6 6.1547 1.5866 1.0054 11 7 7.3839 1.0851 0.3481 12 6 8.5958 0.8159 0.9264 13 1 8.8226 1.2019 1.9093 14 6 9.5323 0.0471 0.2494 15 7 9.1971 -0.5684 -0.8646 16 14 11.2685 -0.1141 0.9196 17 1 11.3703 -1.3484 1.7390 18 1 12.2301 -0.1889 -0.2096 19 1 11.5855 1.0669 1.7622 20 6 7.0065 0.9413 -1.0790 21 6 6.1215 2.1720 -1.3716 22 6 4.9804 1.7937 -2.3179 23 6 6.9610 3.2993 -1.9762 24 6 3.4312 1.2847 0.0001 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 0.2129 2.3204 0.0005 29 1 1.3341 4.5114 0.0011 30 1 3.7924 4.6379 0.0115 31 1 6.4010 2.0831 1.9440 32 1 5.4556 0.7686 1.1792 33 1 9.8516 -1.1060 -1.3375 34 1 6.4414 0.0219 -1.2314 35 1 7.8940 0.9524 -1.7116 36 1 5.3852 1.5756 -3.3062 37 1 4.4664 0.9127 -1.9333 38 1 4.2766 2.6230 -2.3883 39 1 6.3337 4.1773 -2.1296 40 1 7.7763 3.5493 -1.2974 41 1 7.3710 2.9741 -2.9324 42 1 4.0207 0.3797 0.0001 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000528624092.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:43 Heat of formation + Delta-G solvation = -6.897395 kcal Electronic energy + Delta-G solvation = -22055.443970 eV Core-core repulsion = 19000.671108 eV Total energy + Delta-G solvation = -3054.772862 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.48381 -40.03542 -37.91036 -35.28940 -33.09381 -32.48762 -31.33595 -29.05689 -28.26909 -27.82614 -27.33738 -25.34224 -23.64538 -22.60996 -21.65489 -19.69135 -18.89862 -18.36854 -17.14342 -16.82210 -16.70729 -16.57095 -15.91426 -15.69540 -14.96100 -14.89314 -14.74680 -14.45115 -14.12735 -13.75926 -13.62668 -13.29959 -13.15297 -12.96958 -12.81266 -12.67265 -12.58094 -12.33177 -12.18197 -11.95396 -11.93686 -11.77019 -11.63399 -11.39116 -11.32064 -11.10648 -10.67723 -9.55988 -9.06074 -8.82832 -7.88175 -5.24633 0.45795 0.59526 1.45756 1.47086 1.57039 2.45182 2.49477 2.88030 3.30823 3.60351 3.90110 3.93139 4.00272 4.07448 4.17961 4.33938 4.36437 4.43043 4.48278 4.53708 4.60362 4.65298 4.70472 4.74865 4.81493 4.87189 4.96916 4.99573 5.14083 5.17043 5.24628 5.27070 5.39590 5.42636 5.44461 5.51741 5.58235 5.68834 5.74851 5.84766 5.96626 6.22407 6.56770 7.04058 7.71295 8.51495 9.25136 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.025510 B = 0.004897 C = 0.004596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.353386 B = 5716.206419 C = 6091.016673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.347 6.347 3 C 0.112 3.888 4 C -0.214 4.214 5 C -0.074 4.074 6 C -0.158 4.158 7 C -0.021 4.021 8 C -0.047 4.047 9 H 0.090 0.910 10 C 0.128 3.872 11 N -0.617 5.617 12 C -0.238 4.238 13 H 0.078 0.922 14 C -0.061 4.061 15 N -0.948 5.948 16 Si 0.977 3.023 17 H -0.288 1.288 18 H -0.292 1.292 19 H -0.267 1.267 20 C 0.178 3.822 21 C -0.073 4.073 22 C -0.124 4.124 23 C -0.118 4.118 24 C -0.161 4.161 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.112 0.888 28 H 0.151 0.849 29 H 0.157 0.843 30 H 0.140 0.860 31 H 0.048 0.952 32 H 0.018 0.982 33 H 0.248 0.752 34 H -0.014 1.014 35 H 0.050 0.950 36 H 0.049 0.951 37 H 0.045 0.955 38 H 0.068 0.932 39 H 0.075 0.925 40 H 0.038 0.962 41 H 0.047 0.953 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.346 9.428 -0.586 20.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.261 6.261 3 C 0.067 3.933 4 C -0.232 4.232 5 C -0.092 4.092 6 C -0.176 4.176 7 C -0.021 4.021 8 C -0.067 4.067 9 H 0.109 0.891 10 C 0.002 3.998 11 N -0.341 5.341 12 C -0.367 4.367 13 H 0.096 0.904 14 C -0.255 4.255 15 N -0.596 5.596 16 Si 0.805 3.195 17 H -0.215 1.215 18 H -0.218 1.218 19 H -0.191 1.191 20 C 0.052 3.948 21 C -0.075 4.075 22 C -0.181 4.181 23 C -0.175 4.175 24 C -0.180 4.180 25 H 0.085 0.915 26 H 0.086 0.914 27 H 0.130 0.870 28 H 0.169 0.831 29 H 0.175 0.825 30 H 0.158 0.842 31 H 0.067 0.933 32 H 0.036 0.964 33 H 0.057 0.943 34 H 0.004 0.996 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.064 0.936 38 H 0.087 0.913 39 H 0.093 0.907 40 H 0.057 0.943 41 H 0.066 0.934 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -18.043 9.115 -0.593 20.223 hybrid contribution 1.072 -0.893 0.262 1.420 sum -16.971 8.222 -0.331 18.861 Atomic orbital electron populations 1.23315 0.76443 1.05267 1.02391 1.86065 1.23610 1.27510 1.88925 1.19110 0.91849 0.85086 0.97210 1.21445 1.00903 0.91685 1.09178 1.21237 0.94079 0.97820 0.96085 1.21177 0.94316 0.97732 1.04424 1.19455 0.94296 0.92555 0.95809 1.21169 0.90286 0.99856 0.95403 0.89142 1.21942 0.88074 0.94588 0.95165 1.45249 1.07486 1.76786 1.04582 1.19378 0.90435 1.25278 1.01612 0.90427 1.25699 1.02886 0.98148 0.98722 1.70121 1.34391 1.35408 1.19666 0.85096 0.79389 0.77986 0.77052 1.21471 1.21845 1.19109 1.21466 0.95350 0.92085 0.85876 1.21591 0.95398 0.96385 0.94102 1.21900 0.97071 1.01067 0.98048 1.21667 0.98943 0.97383 0.99554 1.20216 0.91891 0.98092 1.07807 0.91473 0.91421 0.86960 0.83101 0.82550 0.84189 0.93324 0.96407 0.94269 0.99595 0.93124 0.93228 0.93606 0.91302 0.90652 0.94322 0.93382 0.88376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.81 113.37 1.11 1.44 16 2 O -0.35 -9.70 10.50 -92.41 -0.97 -10.67 16 3 C 0.11 3.22 6.69 22.51 0.15 3.37 16 4 C -0.21 -4.61 9.04 22.37 0.20 -4.41 16 5 C -0.07 -1.48 10.04 22.26 0.22 -1.25 16 6 C -0.16 -3.80 9.58 22.28 0.21 -3.59 16 7 C -0.02 -0.64 3.25 -19.88 -0.06 -0.70 16 8 C -0.05 -1.70 2.93 -10.63 -0.03 -1.73 16 9 H 0.09 2.98 7.55 -2.39 -0.02 2.96 16 10 C 0.13 5.67 6.65 86.54 0.58 6.24 16 11 N -0.62 -33.14 3.38 -687.73 -2.33 -35.46 16 12 C -0.24 -13.78 10.35 84.03 0.87 -12.91 16 13 H 0.08 4.31 7.84 -2.91 -0.02 4.29 16 14 C -0.06 -3.56 5.40 84.86 0.46 -3.10 16 15 N -0.95 -58.69 10.89 21.65 0.24 -58.45 16 16 Si 0.98 46.62 29.56 68.60 2.03 48.65 16 17 H -0.29 -13.57 7.11 99.48 0.71 -12.87 16 18 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 19 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 20 C 0.18 9.09 4.98 86.50 0.43 9.52 16 21 C -0.07 -2.81 1.02 -51.27 -0.05 -2.87 16 22 C -0.12 -4.19 7.20 71.98 0.52 -3.67 16 23 C -0.12 -4.10 8.23 71.98 0.59 -3.51 16 24 C -0.16 -5.44 6.45 22.37 0.14 -5.29 16 25 H 0.07 0.88 7.66 -2.39 -0.02 0.86 16 26 H 0.07 0.88 7.66 -2.39 -0.02 0.87 16 27 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.15 2.28 6.30 -2.91 -0.02 2.27 16 29 H 0.16 1.96 8.06 -2.91 -0.02 1.94 16 30 H 0.14 2.77 8.01 -2.91 -0.02 2.75 16 31 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.02 0.84 6.02 -2.39 -0.01 0.82 16 33 H 0.25 14.87 8.31 -92.70 -0.77 14.10 16 34 H -0.01 -0.78 7.76 -2.39 -0.02 -0.80 16 35 H 0.05 2.91 6.28 -2.39 -0.02 2.89 16 36 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.04 1.68 5.60 -2.38 -0.01 1.66 16 38 H 0.07 2.02 7.21 -2.39 -0.02 2.01 16 39 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 40 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 42 H 0.10 3.96 6.51 -2.91 -0.02 3.94 16 Total: -1.00 -70.33 326.90 5.31 -65.02 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: 0.99 Total: 13.37 kcal Atomic # 6 Polarization: -27.80 SS G_CDS: 5.34 Total: -22.45 kcal Atomic # 7 Polarization: -91.83 SS G_CDS: -2.09 Total: -93.92 kcal Atomic # 8 Polarization: -9.70 SS G_CDS: -0.97 Total: -10.67 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 2.03 Total: 48.65 kcal Total: -70.33 5.31 -65.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528624092.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.125 kcal (2) G-P(sol) polarization free energy of solvation -70.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds