Wall clock time and date at job start Mon Mar 30 2020 01:44:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.88341 * 2 1 4 4 O 1.42906 * 109.46771 * 56.19253 * 3 2 1 5 5 C 1.54317 * 109.89035 * 121.03777 * 2 1 3 6 6 C 1.55144 * 103.02191 * 97.27592 * 5 2 1 7 7 C 1.54910 * 101.64999 * 35.65732 * 6 5 2 8 8 N 1.47449 * 110.02043 * 238.88383 * 2 1 3 9 9 C 1.46896 * 111.00045 * 117.25993 * 8 2 1 10 10 C 1.50696 * 109.47169 * 176.52119 * 9 8 2 11 11 C 1.38636 * 119.74877 * 269.73113 * 10 9 8 12 12 C 1.37619 * 120.24966 * 179.72329 * 11 10 9 13 13 C 1.40724 * 119.74101 * 0.56917 * 12 11 10 14 14 C 1.41396 * 120.24142 * 179.68163 * 13 12 11 15 15 H 1.08004 * 120.00031 * 214.64049 * 14 13 12 16 16 C 1.39946 * 119.99968 * 34.64915 * 14 13 12 17 17 N 1.30820 * 120.00142 * 355.78102 * 16 14 13 18 18 Si 1.86803 * 119.99756 * 175.78333 * 16 14 13 19 19 H 1.48497 * 109.47179 * 359.97438 * 18 16 14 20 20 H 1.48491 * 109.47103 * 119.99890 * 18 16 14 21 21 H 1.48500 * 109.47082 * 239.99597 * 18 16 14 22 22 C 1.40718 * 119.51158 * 359.70549 * 13 12 11 23 23 C 1.37613 * 119.74506 * 0.02562 * 22 13 12 24 24 H 1.08998 * 109.47154 * 60.69072 * 1 2 3 25 25 H 1.08997 * 109.47721 * 180.69878 * 1 2 3 26 26 H 1.09008 * 109.46687 * 300.70027 * 1 2 3 27 27 H 1.08989 * 109.47313 * 296.19262 * 3 2 1 28 28 H 1.08999 * 109.47113 * 176.18848 * 3 2 1 29 29 H 0.96696 * 113.99546 * 179.97438 * 4 3 2 30 30 H 1.09000 * 110.70817 * 215.66516 * 5 2 1 31 31 H 1.09001 * 110.70499 * 338.72711 * 5 2 1 32 32 H 1.09001 * 110.98928 * 153.74217 * 6 5 2 33 33 H 1.08994 * 110.99742 * 277.56645 * 6 5 2 34 34 H 1.08999 * 110.37604 * 81.75626 * 7 6 5 35 35 H 1.09000 * 110.37011 * 203.98702 * 7 6 5 36 36 H 1.09000 * 109.47308 * 296.52458 * 9 8 2 37 37 H 1.09007 * 109.46943 * 56.52145 * 9 8 2 38 38 H 1.08002 * 119.87920 * 359.97438 * 11 10 9 39 39 H 1.07995 * 120.13421 * 180.27835 * 12 11 10 40 40 H 0.97003 * 119.99946 * 180.02562 * 17 16 14 41 41 H 1.07997 * 120.12139 * 180.02562 * 22 13 12 42 42 H 1.07998 * 119.87885 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0504 1.4388 0.0000 4 8 1.5074 2.1416 1.1195 5 6 2.0550 -0.7482 1.2434 6 6 2.3540 -2.1688 0.6961 7 6 2.8637 -1.8530 -0.7322 8 7 2.0348 -0.7159 -1.1861 9 6 2.8052 0.1833 -2.0554 10 6 3.3752 -0.6003 -3.2095 11 6 4.6292 -1.1803 -3.0947 12 6 5.1572 -1.9028 -4.1401 13 6 4.4242 -2.0416 -5.3334 14 6 4.9595 -2.7760 -6.4166 15 1 4.7547 -2.4682 -7.4314 16 6 5.7546 -3.9018 -6.1738 17 7 6.0709 -4.2270 -4.9468 18 14 6.3642 -4.9402 -7.6020 19 1 5.8706 -4.3646 -8.8787 20 1 7.8491 -4.9536 -7.6058 21 1 5.8571 -6.3284 -7.4566 22 6 3.1549 -1.4438 -5.4407 23 6 2.6443 -0.7304 -4.3804 24 1 -0.3633 0.5031 -0.8961 25 1 -0.3634 -1.0275 0.0125 26 1 -0.3633 0.5247 0.8837 27 1 1.7474 1.9347 -0.9220 28 1 3.1382 1.4317 0.0683 29 1 1.7956 3.0624 1.1832 30 1 2.9651 -0.2804 1.6189 31 1 1.2927 -0.7848 2.0216 32 1 3.1272 -2.6600 1.2868 33 1 1.4475 -2.7731 0.6624 34 1 3.9156 -1.5688 -0.7056 35 1 2.7202 -2.7138 -1.3852 36 1 2.1519 0.9682 -2.4365 37 1 3.6180 0.6324 -1.4845 38 1 5.1921 -1.0681 -2.1798 39 1 6.1323 -2.3576 -4.0470 40 1 6.6223 -5.0071 -4.7786 41 1 2.5837 -1.5444 -6.3517 42 1 1.6702 -0.2710 -4.4603 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000545397073.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:18 Heat of formation + Delta-G solvation = -27.792134 kcal Electronic energy + Delta-G solvation = -21624.741914 eV Core-core repulsion = 18569.062988 eV Total energy + Delta-G solvation = -3055.678926 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.91483 -37.50266 -36.24953 -33.93264 -32.21130 -31.39013 -29.47227 -29.20353 -26.89892 -26.01168 -24.61034 -23.34221 -21.40167 -20.62382 -19.80231 -18.48712 -17.47972 -17.26317 -15.79260 -15.42160 -15.23493 -14.75597 -14.19621 -14.02863 -13.81190 -13.53329 -13.30325 -12.64292 -12.46689 -12.20415 -12.15590 -11.93275 -11.87536 -11.69017 -11.48895 -11.09932 -11.03691 -10.87821 -10.74384 -10.51953 -10.39302 -10.34761 -10.24901 -9.90603 -9.56890 -9.37009 -9.14738 -7.92886 -7.44520 -7.14525 -6.60387 -4.38041 2.73529 3.07157 3.09664 3.13702 3.17892 3.97791 4.02587 4.43803 4.69053 4.78579 4.94689 5.04679 5.24484 5.35662 5.43399 5.59395 5.65517 5.70799 5.76117 5.79638 5.97301 5.99420 6.07145 6.12006 6.21887 6.24158 6.30880 6.39347 6.46160 6.47907 6.57723 6.93801 7.13229 7.25464 7.38249 7.41299 7.46475 7.57796 7.65322 7.87653 8.08946 8.13373 8.33828 8.68184 8.94780 8.99364 10.30757 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.034048 B = 0.004061 C = 0.003872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.177866 B = 6892.482287 C = 7229.664509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.097 3.903 3 C 0.065 3.935 4 O -0.570 6.570 5 C -0.123 4.123 6 C -0.134 4.134 7 C 0.052 3.948 8 N -0.508 5.508 9 C 0.107 3.893 10 C -0.199 4.199 11 C -0.101 4.101 12 C -0.152 4.152 13 C 0.106 3.894 14 C -0.466 4.466 15 H 0.075 0.925 16 C 0.071 3.929 17 N -0.813 5.813 18 Si 0.913 3.087 19 H -0.263 1.263 20 H -0.275 1.275 21 H -0.275 1.275 22 C -0.216 4.216 23 C -0.078 4.078 24 H 0.052 0.948 25 H 0.055 0.945 26 H 0.058 0.942 27 H 0.054 0.946 28 H 0.045 0.955 29 H 0.375 0.625 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.049 0.951 35 H 0.083 0.917 36 H 0.066 0.934 37 H 0.028 0.972 38 H 0.083 0.917 39 H 0.127 0.873 40 H 0.276 0.724 41 H 0.092 0.908 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.927 6.778 9.912 12.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.007 3.993 3 C -0.014 4.014 4 O -0.374 6.374 5 C -0.162 4.162 6 C -0.172 4.172 7 C -0.076 4.076 8 N -0.233 5.233 9 C -0.020 4.020 10 C -0.200 4.200 11 C -0.120 4.120 12 C -0.172 4.172 13 C 0.104 3.896 14 C -0.497 4.497 15 H 0.093 0.907 16 C -0.144 4.144 17 N -0.440 5.440 18 Si 0.738 3.262 19 H -0.186 1.186 20 H -0.200 1.200 21 H -0.200 1.200 22 C -0.235 4.235 23 C -0.097 4.097 24 H 0.071 0.929 25 H 0.074 0.926 26 H 0.077 0.923 27 H 0.072 0.928 28 H 0.063 0.937 29 H 0.221 0.779 30 H 0.081 0.919 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.067 0.933 35 H 0.102 0.898 36 H 0.085 0.915 37 H 0.046 0.954 38 H 0.101 0.899 39 H 0.145 0.855 40 H 0.087 0.913 41 H 0.110 0.890 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -5.499 5.848 9.842 12.701 hybrid contribution 1.303 0.217 -0.317 1.358 sum -4.196 6.064 9.525 12.046 Atomic orbital electron populations 1.21632 0.93220 1.01574 1.01210 1.21721 0.96636 0.90513 0.90407 1.22884 0.96538 0.93478 0.88481 1.86451 1.74004 1.27988 1.48996 1.22754 1.00842 0.95441 0.97116 1.22765 1.01321 0.96602 0.96494 1.22992 0.95565 0.94659 0.94366 1.63925 1.36872 1.08517 1.13983 1.21007 0.94422 0.93916 0.92627 1.18943 0.97004 1.08962 0.95125 1.20604 0.94968 0.98979 0.97436 1.21558 1.01025 1.00372 0.94204 1.17682 0.89795 0.88980 0.93123 1.19578 1.26805 1.09180 0.94157 0.90716 1.25848 0.93977 0.97965 0.96580 1.69761 1.29750 1.24182 1.20310 0.86183 0.78730 0.79607 0.81663 1.18633 1.20034 1.20002 1.21115 0.96934 1.07019 0.98455 1.20344 0.97175 0.98806 0.93405 0.92873 0.92563 0.92311 0.92813 0.93652 0.77898 0.91882 0.90984 0.91218 0.90972 0.93298 0.89817 0.91528 0.95419 0.89927 0.85540 0.91294 0.89007 0.89411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.59 8.53 37.16 0.32 -1.27 16 2 C 0.10 1.36 0.98 -130.61 -0.13 1.23 16 3 C 0.06 0.82 4.56 37.16 0.17 0.99 16 4 O -0.57 -6.43 12.63 -35.23 -0.44 -6.87 16 5 C -0.12 -1.61 5.81 -24.91 -0.14 -1.75 16 6 C -0.13 -1.81 7.08 -24.59 -0.17 -1.99 16 7 C 0.05 0.86 5.37 -2.30 -0.01 0.85 16 8 N -0.51 -8.42 4.89 -217.17 -1.06 -9.48 16 9 C 0.11 1.85 3.91 -4.98 -0.02 1.83 16 10 C -0.20 -4.21 4.82 -104.33 -0.50 -4.71 16 11 C -0.10 -2.29 8.40 -39.66 -0.33 -2.62 16 12 C -0.15 -3.91 8.67 -38.87 -0.34 -4.24 16 13 C 0.11 2.83 5.55 -106.82 -0.59 2.24 16 14 C -0.47 -12.46 9.04 -37.74 -0.34 -12.80 16 15 H 0.07 1.93 7.85 -52.48 -0.41 1.52 16 16 C 0.07 1.80 5.42 -17.34 -0.09 1.71 16 17 N -0.81 -21.17 10.61 55.55 0.59 -20.58 16 18 Si 0.91 19.05 29.56 -169.99 -5.03 14.03 16 19 H -0.26 -5.42 7.11 56.52 0.40 -5.01 16 20 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 21 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 22 C -0.22 -5.29 9.80 -38.87 -0.38 -5.67 16 23 C -0.08 -1.75 9.67 -39.66 -0.38 -2.13 16 24 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 26 H 0.06 0.74 7.59 -51.92 -0.39 0.35 16 27 H 0.05 0.68 6.51 -51.94 -0.34 0.34 16 28 H 0.05 0.58 6.77 -51.93 -0.35 0.23 16 29 H 0.37 2.54 9.12 45.56 0.42 2.96 16 30 H 0.06 0.82 7.80 -51.93 -0.41 0.41 16 31 H 0.07 0.88 7.83 -51.93 -0.41 0.48 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.05 0.85 6.15 -51.93 -0.32 0.53 16 35 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 36 H 0.07 1.10 6.82 -51.93 -0.35 0.74 16 37 H 0.03 0.46 6.30 -51.93 -0.33 0.13 16 38 H 0.08 1.72 7.09 -52.49 -0.37 1.34 16 39 H 0.13 3.40 6.14 -52.49 -0.32 3.08 16 40 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 41 H 0.09 2.14 8.06 -52.49 -0.42 1.71 16 42 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 LS Contribution 327.71 15.07 4.94 4.94 Total: -1.00 -27.98 327.71 -9.64 -37.63 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: -5.68 Total: 8.68 kcal Atomic # 6 Polarization: -25.38 SS G_CDS: -2.96 Total: -28.34 kcal Atomic # 7 Polarization: -29.59 SS G_CDS: -0.47 Total: -30.06 kcal Atomic # 8 Polarization: -6.43 SS G_CDS: -0.44 Total: -6.87 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -5.03 Total: 14.03 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -27.98 -9.64 -37.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000545397073.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.833 kcal (2) G-P(sol) polarization free energy of solvation -27.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds