Wall clock time and date at job start Mon Mar 30 2020 01:44:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.88341 * 2 1 4 4 O 1.42906 * 109.46771 * 56.19253 * 3 2 1 5 5 C 1.54317 * 109.89035 * 121.03777 * 2 1 3 6 6 C 1.55144 * 103.02191 * 97.27592 * 5 2 1 7 7 C 1.54910 * 101.64999 * 35.65732 * 6 5 2 8 8 N 1.47449 * 110.02043 * 238.88383 * 2 1 3 9 9 C 1.46896 * 111.00045 * 117.25993 * 8 2 1 10 10 C 1.50696 * 109.47169 * 176.52119 * 9 8 2 11 11 C 1.38636 * 119.74877 * 269.73113 * 10 9 8 12 12 C 1.37619 * 120.24966 * 179.72329 * 11 10 9 13 13 C 1.40724 * 119.74101 * 0.56917 * 12 11 10 14 14 C 1.41396 * 120.24142 * 179.68163 * 13 12 11 15 15 H 1.08004 * 120.00031 * 214.64049 * 14 13 12 16 16 C 1.39946 * 119.99968 * 34.64915 * 14 13 12 17 17 N 1.30820 * 120.00142 * 355.78102 * 16 14 13 18 18 Si 1.86803 * 119.99756 * 175.78333 * 16 14 13 19 19 H 1.48497 * 109.47179 * 359.97438 * 18 16 14 20 20 H 1.48491 * 109.47103 * 119.99890 * 18 16 14 21 21 H 1.48500 * 109.47082 * 239.99597 * 18 16 14 22 22 C 1.40718 * 119.51158 * 359.70549 * 13 12 11 23 23 C 1.37613 * 119.74506 * 0.02562 * 22 13 12 24 24 H 1.08998 * 109.47154 * 60.69072 * 1 2 3 25 25 H 1.08997 * 109.47721 * 180.69878 * 1 2 3 26 26 H 1.09008 * 109.46687 * 300.70027 * 1 2 3 27 27 H 1.08989 * 109.47313 * 296.19262 * 3 2 1 28 28 H 1.08999 * 109.47113 * 176.18848 * 3 2 1 29 29 H 0.96696 * 113.99546 * 179.97438 * 4 3 2 30 30 H 1.09000 * 110.70817 * 215.66516 * 5 2 1 31 31 H 1.09001 * 110.70499 * 338.72711 * 5 2 1 32 32 H 1.09001 * 110.98928 * 153.74217 * 6 5 2 33 33 H 1.08994 * 110.99742 * 277.56645 * 6 5 2 34 34 H 1.08999 * 110.37604 * 81.75626 * 7 6 5 35 35 H 1.09000 * 110.37011 * 203.98702 * 7 6 5 36 36 H 1.09000 * 109.47308 * 296.52458 * 9 8 2 37 37 H 1.09007 * 109.46943 * 56.52145 * 9 8 2 38 38 H 1.08002 * 119.87920 * 359.97438 * 11 10 9 39 39 H 1.07995 * 120.13421 * 180.27835 * 12 11 10 40 40 H 0.97003 * 119.99946 * 180.02562 * 17 16 14 41 41 H 1.07997 * 120.12139 * 180.02562 * 22 13 12 42 42 H 1.07998 * 119.87885 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0504 1.4388 0.0000 4 8 1.5074 2.1416 1.1195 5 6 2.0550 -0.7482 1.2434 6 6 2.3540 -2.1688 0.6961 7 6 2.8637 -1.8530 -0.7322 8 7 2.0348 -0.7159 -1.1861 9 6 2.8052 0.1833 -2.0554 10 6 3.3752 -0.6003 -3.2095 11 6 4.6292 -1.1803 -3.0947 12 6 5.1572 -1.9028 -4.1401 13 6 4.4242 -2.0416 -5.3334 14 6 4.9595 -2.7760 -6.4166 15 1 4.7547 -2.4682 -7.4314 16 6 5.7546 -3.9018 -6.1738 17 7 6.0709 -4.2270 -4.9468 18 14 6.3642 -4.9402 -7.6020 19 1 5.8706 -4.3646 -8.8787 20 1 7.8491 -4.9536 -7.6058 21 1 5.8571 -6.3284 -7.4566 22 6 3.1549 -1.4438 -5.4407 23 6 2.6443 -0.7304 -4.3804 24 1 -0.3633 0.5031 -0.8961 25 1 -0.3634 -1.0275 0.0125 26 1 -0.3633 0.5247 0.8837 27 1 1.7474 1.9347 -0.9220 28 1 3.1382 1.4317 0.0683 29 1 1.7956 3.0624 1.1832 30 1 2.9651 -0.2804 1.6189 31 1 1.2927 -0.7848 2.0216 32 1 3.1272 -2.6600 1.2868 33 1 1.4475 -2.7731 0.6624 34 1 3.9156 -1.5688 -0.7056 35 1 2.7202 -2.7138 -1.3852 36 1 2.1519 0.9682 -2.4365 37 1 3.6180 0.6324 -1.4845 38 1 5.1921 -1.0681 -2.1798 39 1 6.1323 -2.3576 -4.0470 40 1 6.6223 -5.0071 -4.7786 41 1 2.5837 -1.5444 -6.3517 42 1 1.6702 -0.2710 -4.4603 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000545397073.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:18 Heat of formation + Delta-G solvation = -45.440835 kcal Electronic energy + Delta-G solvation = -21625.507219 eV Core-core repulsion = 18569.062988 eV Total energy + Delta-G solvation = -3056.444231 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.13555 -39.25013 -37.22503 -35.71653 -33.72914 -32.51292 -31.24115 -30.98552 -28.13374 -27.53839 -25.73384 -24.92083 -23.05112 -22.21215 -21.41088 -19.64504 -19.19138 -18.42334 -17.17544 -16.97704 -16.52351 -15.89428 -15.83752 -15.50407 -15.44033 -14.77500 -14.62162 -14.28177 -13.83807 -13.74341 -13.60020 -13.36671 -13.17906 -13.02283 -12.87502 -12.73968 -12.63185 -12.37685 -12.03889 -11.95188 -11.88274 -11.55109 -11.42851 -11.39607 -11.21653 -11.01562 -10.83675 -9.34991 -9.25115 -8.98580 -8.49395 -6.37553 0.93890 1.16643 1.38019 1.47767 1.53369 2.23394 2.72275 3.00029 3.41820 3.65390 3.74978 3.82162 4.04795 4.16347 4.21937 4.27202 4.36347 4.40517 4.53406 4.56402 4.62791 4.67325 4.77230 4.90456 4.94317 4.98833 5.04930 5.08412 5.12104 5.19142 5.21338 5.28803 5.39816 5.48639 5.51780 5.74826 5.94324 6.08008 6.14981 6.26094 6.28446 6.43056 6.74243 6.88890 6.98995 7.05945 8.43581 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.034048 B = 0.004061 C = 0.003872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.177866 B = 6892.482287 C = 7229.664509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.091 3.909 3 C 0.071 3.929 4 O -0.577 6.577 5 C -0.117 4.117 6 C -0.126 4.126 7 C 0.050 3.950 8 N -0.519 5.519 9 C 0.113 3.887 10 C -0.184 4.184 11 C -0.100 4.100 12 C -0.175 4.175 13 C 0.073 3.927 14 C -0.505 4.505 15 H 0.070 0.930 16 C 0.028 3.972 17 N -0.844 5.844 18 Si 0.986 3.014 19 H -0.260 1.260 20 H -0.265 1.265 21 H -0.268 1.268 22 C -0.230 4.230 23 C -0.082 4.082 24 H 0.048 0.952 25 H 0.051 0.949 26 H 0.068 0.932 27 H 0.055 0.945 28 H 0.045 0.955 29 H 0.396 0.604 30 H 0.066 0.934 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.040 0.960 35 H 0.051 0.949 36 H 0.082 0.918 37 H 0.041 0.959 38 H 0.100 0.900 39 H 0.107 0.893 40 H 0.282 0.718 41 H 0.095 0.905 42 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.757 7.706 11.253 14.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.002 3.998 3 C -0.008 4.008 4 O -0.384 6.384 5 C -0.155 4.155 6 C -0.164 4.164 7 C -0.077 4.077 8 N -0.244 5.244 9 C -0.014 4.014 10 C -0.185 4.185 11 C -0.118 4.118 12 C -0.194 4.194 13 C 0.071 3.929 14 C -0.536 4.536 15 H 0.089 0.911 16 C -0.183 4.183 17 N -0.472 5.472 18 Si 0.807 3.193 19 H -0.184 1.184 20 H -0.190 1.190 21 H -0.193 1.193 22 C -0.250 4.250 23 C -0.101 4.101 24 H 0.067 0.933 25 H 0.070 0.930 26 H 0.087 0.913 27 H 0.073 0.927 28 H 0.063 0.937 29 H 0.245 0.755 30 H 0.085 0.915 31 H 0.103 0.897 32 H 0.102 0.898 33 H 0.093 0.907 34 H 0.058 0.942 35 H 0.070 0.930 36 H 0.100 0.900 37 H 0.059 0.941 38 H 0.118 0.882 39 H 0.124 0.876 40 H 0.093 0.907 41 H 0.114 0.886 42 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -6.337 6.810 11.201 14.561 hybrid contribution 1.466 0.046 -0.600 1.585 sum -4.871 6.856 10.602 13.532 Atomic orbital electron populations 1.21590 0.92678 1.01405 1.01479 1.21819 0.96957 0.91494 0.89557 1.22686 0.96363 0.92649 0.89085 1.86396 1.74075 1.29700 1.48241 1.22728 1.01338 0.94533 0.96910 1.22726 1.01757 0.97396 0.94508 1.22891 0.95272 0.93784 0.95781 1.63803 1.36424 1.08694 1.15507 1.20962 0.95221 0.93646 0.91537 1.19363 0.95942 1.07138 0.96052 1.20786 0.95758 0.98149 0.97152 1.21489 1.00702 1.01933 0.95324 1.18001 0.90977 0.90157 0.93802 1.19808 1.28901 1.10759 0.94106 0.91136 1.26702 0.93635 0.98622 0.99335 1.69844 1.30364 1.24869 1.22137 0.85097 0.78441 0.77672 0.78072 1.18358 1.18978 1.19339 1.21298 0.96589 1.07534 0.99531 1.20654 0.98209 0.98208 0.93009 0.93297 0.92995 0.91284 0.92672 0.93700 0.75481 0.91522 0.89719 0.89823 0.90665 0.94216 0.93027 0.89971 0.94143 0.88200 0.87558 0.90714 0.88638 0.86854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.74 8.53 71.98 0.61 -2.12 16 2 C 0.09 2.30 0.98 3.87 0.00 2.30 16 3 C 0.07 1.56 4.56 71.98 0.33 1.89 16 4 O -0.58 -10.91 12.63 -148.98 -1.88 -12.79 16 5 C -0.12 -2.71 5.81 31.78 0.18 -2.52 16 6 C -0.13 -3.17 7.08 31.98 0.23 -2.94 16 7 C 0.05 1.64 5.37 86.77 0.47 2.10 16 8 N -0.52 -16.21 4.89 -841.00 -4.11 -20.32 16 9 C 0.11 3.67 3.91 85.56 0.33 4.00 16 10 C -0.18 -7.61 4.82 -19.68 -0.09 -7.71 16 11 C -0.10 -4.55 8.40 22.22 0.19 -4.36 16 12 C -0.17 -9.32 8.67 22.73 0.20 -9.12 16 13 C 0.07 4.01 5.55 -21.29 -0.12 3.89 16 14 C -0.50 -28.09 9.04 23.46 0.21 -27.87 16 15 H 0.07 3.81 7.85 -2.91 -0.02 3.78 16 16 C 0.03 1.48 5.42 85.26 0.46 1.95 16 17 N -0.84 -45.50 10.61 21.83 0.23 -45.27 16 18 Si 0.99 39.78 29.56 68.60 2.03 41.81 16 19 H -0.26 -10.24 7.11 99.48 0.71 -9.54 16 20 H -0.27 -10.18 7.11 99.48 0.71 -9.47 16 21 H -0.27 -10.47 7.11 99.48 0.71 -9.77 16 22 C -0.23 -11.51 9.80 22.73 0.22 -11.28 16 23 C -0.08 -3.61 9.67 22.22 0.21 -3.39 16 24 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 25 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 26 H 0.07 1.52 7.59 -2.38 -0.02 1.51 16 27 H 0.06 1.20 6.51 -2.39 -0.02 1.18 16 28 H 0.04 0.99 6.77 -2.39 -0.02 0.98 16 29 H 0.40 3.91 9.12 -74.06 -0.68 3.24 16 30 H 0.07 1.51 7.80 -2.39 -0.02 1.49 16 31 H 0.08 1.78 7.83 -2.39 -0.02 1.76 16 32 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.04 1.35 6.15 -2.39 -0.01 1.33 16 35 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.08 2.45 6.82 -2.39 -0.02 2.43 16 37 H 0.04 1.23 6.30 -2.38 -0.02 1.22 16 38 H 0.10 4.13 7.09 -2.91 -0.02 4.11 16 39 H 0.11 6.03 6.14 -2.91 -0.02 6.01 16 40 H 0.28 13.84 8.30 -92.71 -0.77 13.07 16 41 H 0.10 4.56 8.06 -2.91 -0.02 4.53 16 42 H 0.11 4.35 8.06 -2.91 -0.02 4.33 16 Total: -1.00 -61.52 327.71 0.04 -61.48 By element: Atomic # 1 Polarization: 29.95 SS G_CDS: 0.34 Total: 30.29 kcal Atomic # 6 Polarization: -58.63 SS G_CDS: 3.44 Total: -55.19 kcal Atomic # 7 Polarization: -61.70 SS G_CDS: -3.88 Total: -65.59 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: -1.88 Total: -12.79 kcal Atomic # 14 Polarization: 39.78 SS G_CDS: 2.03 Total: 41.81 kcal Total: -61.52 0.04 -61.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000545397073.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.036 kcal (2) G-P(sol) polarization free energy of solvation -61.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds