Wall clock time and date at job start Mon Mar 30 2020 02:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47192 * 2 1 4 4 C 1.52998 * 109.47258 * 119.99901 * 2 1 3 5 5 C 1.53000 * 109.47289 * 305.00313 * 4 2 1 6 6 C 1.52997 * 109.47407 * 184.99934 * 4 2 1 7 7 N 1.46504 * 109.46991 * 65.00178 * 4 2 1 8 8 C 1.34777 * 120.00102 * 180.02562 * 7 4 2 9 9 O 1.21542 * 119.99946 * 359.97438 * 8 7 4 10 10 C 1.47883 * 119.99863 * 179.97438 * 8 7 4 11 11 C 1.39921 * 120.02945 * 359.97438 * 10 8 7 12 12 C 1.38323 * 120.36046 * 180.02562 * 11 10 8 13 13 C 1.37749 * 120.41447 * 359.97438 * 12 11 10 14 14 C 1.40751 * 120.03994 * 359.97438 * 13 12 11 15 15 C 1.41435 * 120.17888 * 180.02562 * 14 13 12 16 16 H 1.08002 * 119.99792 * 24.39006 * 15 14 13 17 17 C 1.39937 * 120.00029 * 204.38102 * 15 14 13 18 18 N 1.30828 * 120.00202 * 17.86125 * 17 15 14 19 19 Si 1.86804 * 120.00094 * 197.85585 * 17 15 14 20 20 H 1.48503 * 109.46909 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.46871 * 120.00054 * 19 17 15 22 22 H 1.48498 * 109.47266 * 240.00165 * 19 17 15 23 23 C 1.38999 * 120.02296 * 179.97438 * 10 8 7 24 24 H 1.09000 * 109.47175 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.47275 * 300.00246 * 1 2 3 26 26 H 1.09002 * 109.47090 * 60.00193 * 1 2 3 27 27 H 1.09000 * 109.47599 * 239.99894 * 2 1 3 28 28 H 1.09002 * 109.47147 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.47459 * 299.99998 * 3 2 1 30 30 H 1.09002 * 109.46682 * 59.99971 * 3 2 1 31 31 H 1.09001 * 109.47154 * 179.97438 * 5 4 2 32 32 H 1.09000 * 109.47034 * 300.00074 * 5 4 2 33 33 H 1.09003 * 109.47174 * 59.99549 * 5 4 2 34 34 H 1.08999 * 109.47189 * 299.99830 * 6 4 2 35 35 H 1.08996 * 109.46967 * 60.00467 * 6 4 2 36 36 H 1.09002 * 109.47246 * 179.97438 * 6 4 2 37 37 H 0.97004 * 120.00290 * 359.97438 * 7 4 2 38 38 H 1.08001 * 119.81453 * 359.97438 * 11 10 8 39 39 H 1.08002 * 119.79194 * 180.02562 * 12 11 10 40 40 H 1.08000 * 119.98284 * 179.97438 * 13 12 11 41 41 H 0.96991 * 120.00411 * 180.02562 * 18 17 15 42 42 H 1.07997 * 120.20633 * 359.70283 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.4299 -0.0763 2.4953 6 6 3.5648 -0.6133 1.3137 7 7 1.6525 -2.1328 1.1905 8 6 1.9956 -2.9680 2.1911 9 8 2.6269 -2.5502 3.1419 10 6 1.6039 -4.3928 2.1321 11 6 0.8766 -4.8744 1.0380 12 6 0.5062 -6.2056 0.9760 13 6 0.8492 -7.0728 1.9898 14 6 1.5815 -6.6070 3.0979 15 6 1.9357 -7.4950 4.1402 16 1 2.0121 -8.5544 3.9445 17 6 2.1874 -7.0009 5.4250 18 7 1.7695 -5.8074 5.7604 19 14 3.1200 -8.0456 6.6614 20 1 3.4804 -9.3450 6.0394 21 1 4.3568 -7.3358 7.0760 22 1 2.2647 -8.2861 7.8513 23 6 1.9580 -5.2548 3.1635 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.7929 -0.5904 3.3853 32 1 1.7182 0.9740 2.5390 33 1 0.3436 -0.1532 2.4494 34 1 3.9994 -1.0728 0.4260 35 1 3.8531 0.4369 1.3574 36 1 3.9281 -1.1267 2.2039 37 1 1.1482 -2.4663 0.4319 38 1 0.6023 -4.2027 0.2380 39 1 -0.0547 -6.5676 0.1270 40 1 0.5560 -8.1108 1.9345 41 1 1.9442 -5.4648 6.6508 42 1 2.5234 -4.8886 4.0076 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000551304711.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:44 Heat of formation + Delta-G solvation = -36.054846 kcal Electronic energy + Delta-G solvation = -21608.955829 eV Core-core repulsion = 18552.918605 eV Total energy + Delta-G solvation = -3056.037224 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.91816 -37.75122 -36.55851 -33.76818 -32.84041 -30.86789 -29.56688 -29.27945 -27.81024 -26.40082 -25.29751 -23.64570 -22.01827 -20.94250 -19.33237 -18.71483 -17.72193 -16.45020 -15.52119 -15.22785 -14.76947 -14.55475 -14.27318 -14.12584 -13.78459 -13.29578 -13.14236 -12.91227 -12.75955 -12.48934 -12.29087 -12.03619 -11.67163 -11.62832 -11.48829 -11.18039 -11.14338 -11.05997 -11.02165 -10.71889 -10.55113 -10.47301 -10.38212 -9.92660 -9.66922 -9.20637 -8.76670 -8.54858 -7.60457 -7.50342 -6.79118 -4.40148 2.24986 2.82100 3.08578 3.13406 3.15924 3.72609 3.90852 3.93886 4.64891 4.66116 4.82742 4.99006 5.33673 5.38612 5.43825 5.57039 5.63091 5.66216 5.80580 5.83618 5.91139 5.94166 5.95000 6.05963 6.12814 6.13881 6.22591 6.24927 6.30612 6.59969 6.68121 6.73949 6.99987 7.03407 7.09992 7.23235 7.40481 7.72550 7.80042 7.95001 8.15867 8.24305 8.52878 8.81855 8.85331 9.05304 10.15482 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.025680 B = 0.004622 C = 0.004125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.081757 B = 6056.134009 C = 6786.792862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.098 4.098 3 C -0.147 4.147 4 C 0.180 3.820 5 C -0.166 4.166 6 C -0.165 4.165 7 N -0.729 5.729 8 C 0.567 3.433 9 O -0.542 6.542 10 C -0.128 4.128 11 C -0.218 4.218 12 C -0.098 4.098 13 C -0.213 4.213 14 C 0.098 3.902 15 C -0.460 4.460 16 H 0.081 0.919 17 C 0.074 3.926 18 N -0.783 5.783 19 Si 0.909 3.091 20 H -0.260 1.260 21 H -0.271 1.271 22 H -0.274 1.274 23 C -0.093 4.093 24 H 0.056 0.944 25 H 0.061 0.939 26 H 0.053 0.947 27 H 0.073 0.927 28 H 0.060 0.940 29 H 0.054 0.946 30 H 0.059 0.941 31 H 0.080 0.920 32 H 0.057 0.943 33 H 0.055 0.945 34 H 0.050 0.950 35 H 0.060 0.940 36 H 0.080 0.920 37 H 0.396 0.604 38 H 0.088 0.912 39 H 0.092 0.908 40 H 0.095 0.905 41 H 0.284 0.716 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.611 10.267 -8.474 13.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.116 4.116 3 C -0.204 4.204 4 C 0.094 3.906 5 C -0.224 4.224 6 C -0.223 4.223 7 N -0.383 5.383 8 C 0.357 3.643 9 O -0.421 6.421 10 C -0.132 4.132 11 C -0.239 4.239 12 C -0.116 4.116 13 C -0.233 4.233 14 C 0.096 3.904 15 C -0.489 4.489 16 H 0.099 0.901 17 C -0.145 4.145 18 N -0.407 5.407 19 Si 0.733 3.267 20 H -0.183 1.183 21 H -0.196 1.196 22 H -0.199 1.199 23 C -0.113 4.113 24 H 0.076 0.924 25 H 0.080 0.920 26 H 0.072 0.928 27 H 0.091 0.909 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.098 0.902 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.079 0.921 36 H 0.099 0.901 37 H 0.232 0.768 38 H 0.106 0.894 39 H 0.110 0.890 40 H 0.113 0.887 41 H 0.095 0.905 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -0.171 10.744 -7.576 13.147 hybrid contribution -0.014 -0.587 0.136 0.603 sum -0.185 10.156 -7.440 12.591 Atomic orbital electron populations 1.21933 0.94928 1.02156 1.01839 1.21338 0.96195 0.96681 0.97435 1.21919 1.01408 0.95231 1.01850 1.20182 0.94514 0.81023 0.94833 1.22318 1.00706 1.00110 0.99262 1.22289 0.94866 1.01705 1.03461 1.46117 1.59148 1.08586 1.24442 1.18753 0.77920 0.86393 0.81190 1.90621 1.40249 1.77809 1.33381 1.19534 1.04254 0.91581 0.97793 1.20339 1.09014 0.95653 0.98851 1.20427 0.99994 0.93580 0.97639 1.21089 1.05659 0.98505 0.98043 1.17609 0.88846 0.92118 0.91841 1.19620 1.41071 0.95329 0.92907 0.90087 1.25958 0.93690 0.95257 0.99630 1.69799 1.33264 1.16745 1.20910 0.86253 0.79881 0.80834 0.79754 1.18341 1.19561 1.19921 1.21635 0.99570 0.93137 0.96934 0.92445 0.91991 0.92802 0.90893 0.92089 0.92702 0.92179 0.90152 0.92382 0.92558 0.93049 0.92133 0.90132 0.76835 0.89362 0.88994 0.88686 0.90524 0.84842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 8.58 37.16 0.32 -1.23 16 2 C -0.10 -1.06 2.32 -90.62 -0.21 -1.27 16 3 C -0.15 -1.34 8.46 37.16 0.31 -1.02 16 4 C 0.18 2.55 0.53 -131.82 -0.07 2.48 16 5 C -0.17 -2.44 7.67 37.16 0.28 -2.16 16 6 C -0.17 -2.39 7.91 37.16 0.29 -2.09 16 7 N -0.73 -12.13 4.78 -48.53 -0.23 -12.36 16 8 C 0.57 12.24 7.19 -12.31 -0.09 12.15 16 9 O -0.54 -13.09 12.54 5.33 0.07 -13.02 16 10 C -0.13 -3.04 5.87 -105.04 -0.62 -3.65 16 11 C -0.22 -4.62 9.55 -38.92 -0.37 -5.00 16 12 C -0.10 -2.11 10.01 -39.73 -0.40 -2.51 16 13 C -0.21 -5.10 9.78 -38.81 -0.38 -5.48 16 14 C 0.10 2.62 5.57 -106.87 -0.60 2.02 16 15 C -0.46 -12.16 9.05 -37.73 -0.34 -12.51 16 16 H 0.08 2.04 7.91 -52.49 -0.41 1.62 16 17 C 0.07 1.87 5.14 -17.34 -0.09 1.78 16 18 N -0.78 -20.81 10.95 55.55 0.61 -20.20 16 19 Si 0.91 18.84 29.60 -169.99 -5.03 13.81 16 20 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 21 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 22 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 23 C -0.09 -2.48 8.23 -38.44 -0.32 -2.79 16 24 H 0.06 0.62 7.18 -51.93 -0.37 0.25 16 25 H 0.06 0.65 6.34 -51.93 -0.33 0.32 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.06 0.55 6.35 -51.93 -0.33 0.22 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.54 6.56 -51.93 -0.34 0.20 16 31 H 0.08 1.47 6.16 -51.93 -0.32 1.15 16 32 H 0.06 0.71 6.56 -51.93 -0.34 0.37 16 33 H 0.06 0.80 6.35 -51.93 -0.33 0.47 16 34 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.06 0.73 6.35 -51.93 -0.33 0.40 16 36 H 0.08 1.43 6.17 -51.93 -0.32 1.11 16 37 H 0.40 5.87 5.67 -40.82 -0.23 5.64 16 38 H 0.09 1.55 6.38 -52.49 -0.33 1.22 16 39 H 0.09 1.68 8.06 -52.49 -0.42 1.25 16 40 H 0.09 2.12 8.06 -52.49 -0.42 1.69 16 41 H 0.28 6.91 8.30 -40.82 -0.34 6.57 16 42 H 0.13 3.86 5.74 -52.49 -0.30 3.55 16 LS Contribution 325.75 15.07 4.91 4.91 Total: -1.00 -28.72 325.75 -7.91 -36.63 By element: Atomic # 1 Polarization: 17.48 SS G_CDS: -5.97 Total: 11.51 kcal Atomic # 6 Polarization: -19.02 SS G_CDS: -2.27 Total: -21.28 kcal Atomic # 7 Polarization: -32.94 SS G_CDS: 0.38 Total: -32.56 kcal Atomic # 8 Polarization: -13.09 SS G_CDS: 0.07 Total: -13.02 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -5.03 Total: 13.81 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -28.72 -7.91 -36.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000551304711.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.572 kcal (2) G-P(sol) polarization free energy of solvation -28.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds