Wall clock time and date at job start Mon Mar 30 2020 02:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46682 * 2 1 4 4 C 1.53000 * 109.46962 * 119.99342 * 2 1 3 5 5 C 1.52997 * 109.47089 * 55.00851 * 4 2 1 6 6 C 1.52993 * 109.47512 * 295.00476 * 4 2 1 7 7 N 1.46500 * 109.46911 * 175.00482 * 4 2 1 8 8 C 1.34780 * 120.00227 * 180.02562 * 7 4 2 9 9 O 1.21592 * 119.99705 * 359.97438 * 8 7 4 10 10 C 1.47642 * 120.00140 * 180.02562 * 8 7 4 11 11 C 1.40014 * 119.89289 * 179.97438 * 10 8 7 12 12 C 1.36314 * 120.10542 * 180.27327 * 11 10 8 13 13 C 1.40892 * 119.89099 * 359.50150 * 12 11 10 14 14 C 1.41107 * 120.10345 * 180.22549 * 13 12 11 15 15 H 1.07997 * 120.00225 * 205.24410 * 14 13 12 16 16 C 1.40226 * 119.99908 * 25.24987 * 14 13 12 17 17 N 1.30649 * 120.00094 * 17.90569 * 16 14 13 18 18 Si 1.86800 * 119.99925 * 197.90839 * 16 14 13 19 19 H 1.48509 * 109.47112 * 94.52575 * 18 16 14 20 20 H 1.48494 * 109.47261 * 214.52265 * 18 16 14 21 21 H 1.48498 * 109.47411 * 334.52525 * 18 16 14 22 22 C 1.40890 * 119.79342 * 0.50234 * 13 12 11 23 23 C 1.36319 * 119.89196 * 359.74472 * 22 13 12 24 24 H 1.08996 * 109.47385 * 299.99987 * 1 2 3 25 25 H 1.08998 * 109.47131 * 60.00745 * 1 2 3 26 26 H 1.09007 * 109.46628 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47385 * 240.00013 * 2 1 3 28 28 H 1.08996 * 109.47200 * 59.99899 * 3 2 1 29 29 H 1.09001 * 109.47404 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.47444 * 299.99331 * 3 2 1 31 31 H 1.08994 * 109.47367 * 179.97438 * 5 4 2 32 32 H 1.09001 * 109.47092 * 299.99789 * 5 4 2 33 33 H 1.09002 * 109.47422 * 59.99274 * 5 4 2 34 34 H 1.09004 * 109.47357 * 300.00124 * 6 4 2 35 35 H 1.08998 * 109.47312 * 60.00041 * 6 4 2 36 36 H 1.08998 * 109.47515 * 180.02562 * 6 4 2 37 37 H 0.97005 * 120.00362 * 359.97438 * 7 4 2 38 38 H 1.07995 * 119.94885 * 0.02562 * 11 10 8 39 39 H 1.08001 * 120.05928 * 179.74637 * 12 11 10 40 40 H 0.96994 * 119.99882 * 180.02562 * 17 16 14 41 41 H 1.07995 * 120.05447 * 179.73521 * 22 13 12 42 42 H 1.07993 * 119.94874 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.4301 -2.1228 1.3138 6 6 1.6351 0.0690 2.4953 7 7 3.5000 -0.8261 1.1907 8 6 4.1731 -1.4288 2.1909 9 8 3.5684 -1.8849 3.1421 10 6 5.6445 -1.5342 2.1321 11 6 6.3415 -2.1602 3.1726 12 6 7.7005 -2.2549 3.1254 13 6 8.4030 -1.7309 2.0223 14 6 9.8094 -1.8307 1.9665 15 1 10.3787 -1.1198 1.3861 16 6 10.4679 -2.8531 2.6647 17 7 9.8018 -3.9014 3.0700 18 14 12.2976 -2.7162 3.0154 19 1 12.5005 -2.1337 4.3663 20 1 12.9145 -4.0658 2.9606 21 1 12.9324 -1.8401 1.9982 22 6 7.6973 -1.1017 0.9777 23 6 6.3386 -1.0073 1.0361 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0278 0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.6765 1.9564 0.8899 29 1 3.1299 1.4427 -0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.7937 -2.6367 2.2035 32 1 0.3437 -2.0447 1.3574 33 1 1.7184 -2.6857 0.4261 34 1 2.0697 1.0677 2.4494 35 1 0.5488 0.1472 2.5390 36 1 1.9988 -0.4444 3.3853 37 1 3.9824 -0.4626 0.4317 38 1 5.8018 -2.5652 4.0159 39 1 8.2376 -2.7344 3.9304 40 1 10.2572 -4.6084 3.5532 41 1 8.2318 -0.6948 0.1321 42 1 5.7968 -0.5248 0.2362 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000556011305.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:49 Heat of formation + Delta-G solvation = -39.947160 kcal Electronic energy + Delta-G solvation = -21308.399717 eV Core-core repulsion = 18252.193710 eV Total energy + Delta-G solvation = -3056.206007 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.84707 -37.77736 -36.58646 -33.87112 -32.82421 -30.75861 -29.82330 -29.23621 -27.83322 -26.45808 -25.74756 -23.33869 -21.81114 -20.87682 -19.43066 -18.69784 -17.47936 -17.04044 -15.73801 -15.27860 -14.71590 -14.42137 -14.20265 -13.96266 -13.81373 -13.30102 -13.15241 -12.88547 -12.73608 -12.33973 -12.26043 -12.03141 -11.86751 -11.59293 -11.52228 -11.32458 -11.24984 -11.16941 -11.01693 -10.91796 -10.65365 -10.49417 -10.36231 -10.00289 -9.51291 -9.32478 -8.71720 -8.49983 -7.67881 -7.53964 -7.00164 -4.58203 2.27021 2.92900 2.97185 3.00065 3.04982 3.76012 3.81069 3.91997 4.59472 4.67148 4.83436 5.00142 5.34845 5.39522 5.45009 5.57085 5.60313 5.71710 5.81834 5.85764 5.90781 5.95191 5.99306 6.03955 6.13101 6.14236 6.23546 6.27366 6.32786 6.61253 6.66962 6.82608 6.86360 7.08384 7.10515 7.17855 7.46016 7.64061 7.82234 7.90525 8.07770 8.33948 8.45405 8.65134 8.77698 9.17034 9.92217 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.041333 B = 0.003659 C = 0.003489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.258406 B = 7651.105630 C = 8022.568766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.098 4.098 3 C -0.151 4.151 4 C 0.182 3.818 5 C -0.165 4.165 6 C -0.165 4.165 7 N -0.735 5.735 8 C 0.574 3.426 9 O -0.569 6.569 10 C -0.282 4.282 11 C -0.036 4.036 12 C -0.182 4.182 13 C 0.129 3.871 14 C -0.446 4.446 15 H 0.084 0.916 16 C 0.074 3.926 17 N -0.770 5.770 18 Si 0.913 3.087 19 H -0.265 1.265 20 H -0.275 1.275 21 H -0.259 1.259 22 C -0.235 4.235 23 C -0.050 4.050 24 H 0.059 0.941 25 H 0.054 0.946 26 H 0.060 0.940 27 H 0.072 0.928 28 H 0.060 0.940 29 H 0.056 0.944 30 H 0.053 0.947 31 H 0.080 0.920 32 H 0.058 0.942 33 H 0.050 0.950 34 H 0.054 0.946 35 H 0.056 0.944 36 H 0.079 0.921 37 H 0.393 0.607 38 H 0.100 0.900 39 H 0.119 0.881 40 H 0.287 0.713 41 H 0.096 0.904 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.399 5.883 -4.928 12.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.117 4.117 3 C -0.208 4.208 4 C 0.095 3.905 5 C -0.223 4.223 6 C -0.223 4.223 7 N -0.388 5.388 8 C 0.369 3.631 9 O -0.451 6.451 10 C -0.287 4.287 11 C -0.056 4.056 12 C -0.202 4.202 13 C 0.125 3.875 14 C -0.473 4.473 15 H 0.102 0.898 16 C -0.147 4.147 17 N -0.393 5.393 18 Si 0.737 3.263 19 H -0.190 1.190 20 H -0.200 1.200 21 H -0.183 1.183 22 C -0.255 4.255 23 C -0.069 4.069 24 H 0.078 0.922 25 H 0.073 0.927 26 H 0.079 0.921 27 H 0.091 0.909 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.099 0.901 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.098 0.902 37 H 0.229 0.771 38 H 0.118 0.882 39 H 0.137 0.863 40 H 0.098 0.902 41 H 0.114 0.886 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -10.808 5.321 -4.148 12.741 hybrid contribution 1.089 0.101 -0.357 1.151 sum -9.718 5.422 -4.505 12.006 Atomic orbital electron populations 1.21917 0.94533 1.02149 1.01796 1.21344 0.96397 0.96423 0.97552 1.21928 1.01349 0.95742 1.01776 1.20135 0.80628 0.95055 0.94632 1.22287 0.99972 0.96538 1.03456 1.22309 1.00508 1.00097 0.99342 1.46072 1.06069 1.62028 1.24591 1.18511 0.87878 0.75772 0.80938 1.90567 1.70306 1.50031 1.34184 1.18973 0.90399 1.17737 1.01575 1.20476 0.94185 0.94951 0.95947 1.20997 0.92676 1.06790 0.99687 1.17777 0.93215 0.87228 0.89247 1.19835 0.92089 1.10511 1.24903 0.89778 1.26095 1.01572 0.93958 0.93097 1.69753 1.39074 1.04971 1.25525 0.86208 0.81188 0.78822 0.80100 1.18997 1.20005 1.18286 1.20667 0.93264 1.11473 1.00079 1.20359 0.94510 0.96840 0.95205 0.92234 0.92726 0.92108 0.90914 0.92055 0.92457 0.92832 0.90138 0.92297 0.93122 0.92667 0.92525 0.90243 0.77132 0.88208 0.86311 0.90212 0.88575 0.89403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 8.46 37.16 0.31 -1.02 16 2 C -0.10 -1.06 2.32 -90.62 -0.21 -1.27 16 3 C -0.15 -1.53 8.58 37.16 0.32 -1.21 16 4 C 0.18 2.53 0.53 -131.82 -0.07 2.46 16 5 C -0.16 -2.37 7.91 37.16 0.29 -2.07 16 6 C -0.16 -2.33 7.67 37.15 0.28 -2.05 16 7 N -0.73 -12.06 4.78 -48.60 -0.23 -12.30 16 8 C 0.57 11.99 7.18 -12.42 -0.09 11.90 16 9 O -0.57 -13.09 12.53 5.28 0.07 -13.02 16 10 C -0.28 -6.45 5.89 -104.73 -0.62 -7.06 16 11 C -0.04 -0.89 9.52 -39.61 -0.38 -1.27 16 12 C -0.18 -4.68 8.63 -39.27 -0.34 -5.02 16 13 C 0.13 3.29 5.57 -106.80 -0.59 2.70 16 14 C -0.45 -11.16 9.04 -37.75 -0.34 -11.50 16 15 H 0.08 2.00 7.91 -52.49 -0.42 1.58 16 16 C 0.07 1.76 5.13 -17.31 -0.09 1.67 16 17 N -0.77 -18.98 11.00 55.56 0.61 -18.37 16 18 Si 0.91 17.52 29.60 -169.99 -5.03 12.49 16 19 H -0.27 -5.05 7.11 56.52 0.40 -4.65 16 20 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 21 H -0.26 -4.89 7.11 56.52 0.40 -4.49 16 22 C -0.24 -5.47 9.73 -39.27 -0.38 -5.85 16 23 C -0.05 -1.07 9.47 -39.61 -0.38 -1.44 16 24 H 0.06 0.53 6.56 -51.93 -0.34 0.19 16 25 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.55 6.34 -51.92 -0.33 0.22 16 27 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.06 0.63 6.34 -51.93 -0.33 0.30 16 29 H 0.06 0.62 7.18 -51.93 -0.37 0.24 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.08 1.42 6.16 -51.93 -0.32 1.10 16 32 H 0.06 0.70 6.34 -51.93 -0.33 0.37 16 33 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.05 0.75 6.35 -51.93 -0.33 0.42 16 35 H 0.06 0.67 6.56 -51.93 -0.34 0.33 16 36 H 0.08 1.38 6.16 -51.93 -0.32 1.06 16 37 H 0.39 5.82 5.66 -40.82 -0.23 5.59 16 38 H 0.10 2.42 7.63 -52.49 -0.40 2.02 16 39 H 0.12 3.13 6.20 -52.49 -0.33 2.80 16 40 H 0.29 6.37 8.29 -40.82 -0.34 6.03 16 41 H 0.10 2.06 8.06 -52.49 -0.42 1.63 16 42 H 0.09 1.55 6.37 -52.49 -0.33 1.21 16 LS Contribution 325.56 15.07 4.91 4.91 Total: -1.00 -27.54 325.56 -7.92 -35.46 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: -5.97 Total: 11.87 kcal Atomic # 6 Polarization: -18.77 SS G_CDS: -2.27 Total: -21.04 kcal Atomic # 7 Polarization: -31.05 SS G_CDS: 0.38 Total: -30.67 kcal Atomic # 8 Polarization: -13.09 SS G_CDS: 0.07 Total: -13.02 kcal Atomic # 14 Polarization: 17.52 SS G_CDS: -5.03 Total: 12.49 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -27.54 -7.92 -35.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000556011305.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.485 kcal (2) G-P(sol) polarization free energy of solvation -27.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds