Wall clock time and date at job start Mon Mar 30 2020 02:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46682 * 2 1 4 4 C 1.53000 * 109.46962 * 119.99342 * 2 1 3 5 5 C 1.52997 * 109.47089 * 55.00851 * 4 2 1 6 6 C 1.52993 * 109.47512 * 295.00476 * 4 2 1 7 7 N 1.46500 * 109.46911 * 175.00482 * 4 2 1 8 8 C 1.34780 * 120.00227 * 180.02562 * 7 4 2 9 9 O 1.21592 * 119.99705 * 359.97438 * 8 7 4 10 10 C 1.47642 * 120.00140 * 180.02562 * 8 7 4 11 11 C 1.40014 * 119.89289 * 179.97438 * 10 8 7 12 12 C 1.36314 * 120.10542 * 180.27327 * 11 10 8 13 13 C 1.40892 * 119.89099 * 359.50150 * 12 11 10 14 14 C 1.41107 * 120.10345 * 180.22549 * 13 12 11 15 15 H 1.07997 * 120.00225 * 205.24410 * 14 13 12 16 16 C 1.40226 * 119.99908 * 25.24987 * 14 13 12 17 17 N 1.30649 * 120.00094 * 17.90569 * 16 14 13 18 18 Si 1.86800 * 119.99925 * 197.90839 * 16 14 13 19 19 H 1.48509 * 109.47112 * 94.52575 * 18 16 14 20 20 H 1.48494 * 109.47261 * 214.52265 * 18 16 14 21 21 H 1.48498 * 109.47411 * 334.52525 * 18 16 14 22 22 C 1.40890 * 119.79342 * 0.50234 * 13 12 11 23 23 C 1.36319 * 119.89196 * 359.74472 * 22 13 12 24 24 H 1.08996 * 109.47385 * 299.99987 * 1 2 3 25 25 H 1.08998 * 109.47131 * 60.00745 * 1 2 3 26 26 H 1.09007 * 109.46628 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47385 * 240.00013 * 2 1 3 28 28 H 1.08996 * 109.47200 * 59.99899 * 3 2 1 29 29 H 1.09001 * 109.47404 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.47444 * 299.99331 * 3 2 1 31 31 H 1.08994 * 109.47367 * 179.97438 * 5 4 2 32 32 H 1.09001 * 109.47092 * 299.99789 * 5 4 2 33 33 H 1.09002 * 109.47422 * 59.99274 * 5 4 2 34 34 H 1.09004 * 109.47357 * 300.00124 * 6 4 2 35 35 H 1.08998 * 109.47312 * 60.00041 * 6 4 2 36 36 H 1.08998 * 109.47515 * 180.02562 * 6 4 2 37 37 H 0.97005 * 120.00362 * 359.97438 * 7 4 2 38 38 H 1.07995 * 119.94885 * 0.02562 * 11 10 8 39 39 H 1.08001 * 120.05928 * 179.74637 * 12 11 10 40 40 H 0.96994 * 119.99882 * 180.02562 * 17 16 14 41 41 H 1.07995 * 120.05447 * 179.73521 * 22 13 12 42 42 H 1.07993 * 119.94874 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.4301 -2.1228 1.3138 6 6 1.6351 0.0690 2.4953 7 7 3.5000 -0.8261 1.1907 8 6 4.1731 -1.4288 2.1909 9 8 3.5684 -1.8849 3.1421 10 6 5.6445 -1.5342 2.1321 11 6 6.3415 -2.1602 3.1726 12 6 7.7005 -2.2549 3.1254 13 6 8.4030 -1.7309 2.0223 14 6 9.8094 -1.8307 1.9665 15 1 10.3787 -1.1198 1.3861 16 6 10.4679 -2.8531 2.6647 17 7 9.8018 -3.9014 3.0700 18 14 12.2976 -2.7162 3.0154 19 1 12.5005 -2.1337 4.3663 20 1 12.9145 -4.0658 2.9606 21 1 12.9324 -1.8401 1.9982 22 6 7.6973 -1.1017 0.9777 23 6 6.3386 -1.0073 1.0361 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0278 0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.6765 1.9564 0.8899 29 1 3.1299 1.4427 -0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.7937 -2.6367 2.2035 32 1 0.3437 -2.0447 1.3574 33 1 1.7184 -2.6857 0.4261 34 1 2.0697 1.0677 2.4494 35 1 0.5488 0.1472 2.5390 36 1 1.9988 -0.4444 3.3853 37 1 3.9824 -0.4626 0.4317 38 1 5.8018 -2.5652 4.0159 39 1 8.2376 -2.7344 3.9304 40 1 10.2572 -4.6084 3.5532 41 1 8.2318 -0.6948 0.1321 42 1 5.7968 -0.5248 0.2362 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000556011305.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:48 Heat of formation + Delta-G solvation = -54.393971 kcal Electronic energy + Delta-G solvation = -21309.026178 eV Core-core repulsion = 18252.193710 eV Total energy + Delta-G solvation = -3056.832468 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.27026 -39.38440 -38.10991 -35.68122 -34.16024 -32.20430 -31.55931 -30.84286 -28.82860 -27.75585 -27.17677 -24.60021 -23.42077 -22.65409 -20.99790 -19.95143 -19.28576 -18.50953 -17.20819 -16.81709 -16.09891 -15.72356 -15.69302 -15.43701 -15.17452 -14.87595 -14.46874 -14.28171 -14.00852 -13.83422 -13.66676 -13.31479 -13.25353 -13.02774 -12.82506 -12.73424 -12.54441 -12.49788 -12.33599 -12.14335 -11.90061 -11.72995 -11.52928 -11.38185 -11.30436 -11.12745 -10.34570 -9.94444 -9.56230 -9.39511 -8.78658 -6.47760 0.47370 1.15185 1.37671 1.43155 1.53306 2.14117 2.20333 2.44530 2.81834 3.68946 3.70889 3.93723 4.08325 4.26142 4.34407 4.35350 4.41520 4.45774 4.62653 4.79421 4.81017 4.88586 4.95782 4.97260 5.00325 5.02287 5.07395 5.09248 5.17705 5.21955 5.26701 5.28981 5.36364 5.53686 5.59446 5.61427 5.79688 5.81654 5.98720 6.02997 6.21133 6.56621 6.77401 6.83417 6.91361 7.57031 8.16953 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.041333 B = 0.003659 C = 0.003489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.258406 B = 7651.105630 C = 8022.568766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.091 4.091 3 C -0.151 4.151 4 C 0.175 3.825 5 C -0.162 4.162 6 C -0.161 4.161 7 N -0.717 5.717 8 C 0.573 3.427 9 O -0.595 6.595 10 C -0.292 4.292 11 C -0.051 4.051 12 C -0.202 4.202 13 C 0.101 3.899 14 C -0.475 4.475 15 H 0.091 0.909 16 C 0.034 3.966 17 N -0.805 5.805 18 Si 0.989 3.011 19 H -0.263 1.263 20 H -0.267 1.267 21 H -0.251 1.251 22 C -0.246 4.246 23 C -0.039 4.039 24 H 0.061 0.939 25 H 0.072 0.928 26 H 0.061 0.939 27 H 0.079 0.921 28 H 0.059 0.941 29 H 0.048 0.952 30 H 0.072 0.928 31 H 0.042 0.958 32 H 0.085 0.915 33 H 0.052 0.948 34 H 0.059 0.941 35 H 0.081 0.919 36 H 0.041 0.959 37 H 0.403 0.597 38 H 0.090 0.910 39 H 0.101 0.899 40 H 0.295 0.705 41 H 0.115 0.885 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.138 7.345 -6.965 15.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.110 4.110 3 C -0.208 4.208 4 C 0.090 3.910 5 C -0.220 4.220 6 C -0.219 4.219 7 N -0.370 5.370 8 C 0.366 3.634 9 O -0.479 6.479 10 C -0.296 4.296 11 C -0.070 4.070 12 C -0.222 4.222 13 C 0.098 3.902 14 C -0.503 4.503 15 H 0.109 0.891 16 C -0.185 4.185 17 N -0.429 5.429 18 Si 0.809 3.191 19 H -0.187 1.187 20 H -0.191 1.191 21 H -0.174 1.174 22 C -0.265 4.265 23 C -0.058 4.058 24 H 0.080 0.920 25 H 0.091 0.909 26 H 0.080 0.920 27 H 0.097 0.903 28 H 0.078 0.922 29 H 0.067 0.933 30 H 0.091 0.909 31 H 0.061 0.939 32 H 0.104 0.896 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.100 0.900 36 H 0.060 0.940 37 H 0.241 0.759 38 H 0.108 0.892 39 H 0.119 0.881 40 H 0.106 0.894 41 H 0.133 0.867 42 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -11.577 6.803 -6.220 14.798 hybrid contribution 1.171 -0.349 0.262 1.250 sum -10.406 6.453 -5.959 13.617 Atomic orbital electron populations 1.21922 0.92847 1.02615 1.02867 1.21316 0.97681 0.96396 0.95570 1.21940 1.00865 0.95300 1.02718 1.20433 0.78767 0.95355 0.96494 1.22250 1.01670 0.96394 1.01657 1.22257 1.02124 0.99736 0.97740 1.45957 1.07409 1.60208 1.23383 1.18301 0.87217 0.76233 0.81629 1.90570 1.70579 1.51241 1.35509 1.19296 0.91919 1.17042 1.01383 1.20544 0.94057 0.95747 0.96670 1.20915 0.93094 1.08194 0.99984 1.18136 0.94113 0.88109 0.89879 1.20144 0.92302 1.11453 1.26355 0.89064 1.27014 1.06326 0.93004 0.92137 1.69807 1.41257 1.05809 1.26027 0.85079 0.75024 0.79125 0.79895 1.18747 1.19138 1.17400 1.20942 0.94189 1.11375 1.00042 1.20687 0.94065 0.95557 0.95476 0.91973 0.90920 0.91958 0.90295 0.92203 0.93252 0.90870 0.93869 0.89628 0.92884 0.92171 0.90000 0.93950 0.75942 0.89153 0.88058 0.89438 0.86702 0.85066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 8.46 71.98 0.61 -1.46 16 2 C -0.09 -1.65 2.32 -10.79 -0.03 -1.68 16 3 C -0.15 -2.53 8.58 71.98 0.62 -1.91 16 4 C 0.17 4.53 0.53 3.60 0.00 4.53 16 5 C -0.16 -4.44 7.91 71.98 0.57 -3.87 16 6 C -0.16 -4.33 7.67 71.98 0.55 -3.78 16 7 N -0.72 -22.47 4.78 -425.94 -2.04 -24.51 16 8 C 0.57 23.98 7.18 86.73 0.62 24.60 16 9 O -0.60 -28.17 12.53 -4.00 -0.05 -28.22 16 10 C -0.29 -13.44 5.89 -19.93 -0.12 -13.56 16 11 C -0.05 -2.61 9.52 22.25 0.21 -2.40 16 12 C -0.20 -10.92 8.63 22.47 0.19 -10.73 16 13 C 0.10 5.28 5.57 -21.28 -0.12 5.17 16 14 C -0.48 -24.18 9.04 23.46 0.21 -23.97 16 15 H 0.09 4.35 7.91 -2.91 -0.02 4.32 16 16 C 0.03 1.61 5.13 85.35 0.44 2.05 16 17 N -0.81 -40.88 11.00 21.87 0.24 -40.64 16 18 Si 0.99 35.83 29.60 68.60 2.03 37.86 16 19 H -0.26 -9.35 7.11 99.48 0.71 -8.64 16 20 H -0.27 -9.23 7.11 99.48 0.71 -8.53 16 21 H -0.25 -8.67 7.11 99.48 0.71 -7.96 16 22 C -0.25 -11.33 9.73 22.47 0.22 -11.12 16 23 C -0.04 -1.62 9.47 22.25 0.21 -1.41 16 24 H 0.06 0.87 6.56 -2.39 -0.02 0.85 16 25 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.06 0.88 6.34 -2.38 -0.02 0.87 16 27 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.06 1.03 6.34 -2.39 -0.02 1.01 16 29 H 0.05 0.90 7.18 -2.39 -0.02 0.88 16 30 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.04 1.52 6.16 -2.39 -0.01 1.51 16 32 H 0.09 1.85 6.34 -2.39 -0.02 1.84 16 33 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.06 1.54 6.35 -2.39 -0.02 1.52 16 35 H 0.08 1.76 6.56 -2.39 -0.02 1.74 16 36 H 0.04 1.47 6.16 -2.39 -0.01 1.46 16 37 H 0.40 10.86 5.66 -92.70 -0.52 10.33 16 38 H 0.09 4.68 7.63 -2.91 -0.02 4.66 16 39 H 0.10 5.69 6.20 -2.91 -0.02 5.67 16 40 H 0.29 13.41 8.29 -92.71 -0.77 12.65 16 41 H 0.11 4.76 8.06 -2.91 -0.02 4.73 16 42 H 0.13 4.20 6.37 -2.91 -0.02 4.18 16 Total: -1.00 -62.34 325.56 4.89 -57.45 By element: Atomic # 1 Polarization: 37.08 SS G_CDS: 0.51 Total: 37.59 kcal Atomic # 6 Polarization: -43.73 SS G_CDS: 4.20 Total: -39.54 kcal Atomic # 7 Polarization: -63.35 SS G_CDS: -1.80 Total: -65.14 kcal Atomic # 8 Polarization: -28.17 SS G_CDS: -0.05 Total: -28.22 kcal Atomic # 14 Polarization: 35.83 SS G_CDS: 2.03 Total: 37.86 kcal Total: -62.34 4.89 -57.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000556011305.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.059 kcal (2) G-P(sol) polarization free energy of solvation -62.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds