Wall clock time and date at job start Mon Mar 30 2020 01:57:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50703 * 109.47282 * 2 1 4 4 C 1.37951 * 119.90061 * 6.92316 * 3 2 1 5 5 C 1.38256 * 120.26379 * 180.02562 * 4 3 2 6 6 C 1.38354 * 119.88755 * 359.89960 * 5 4 3 7 7 C 1.37878 * 120.07474 * 359.95479 * 6 5 4 8 8 C 1.39004 * 120.48305 * 0.29826 * 7 6 5 9 9 N 1.40033 * 110.95028 * 179.20938 * 8 7 6 10 10 C 1.46901 * 110.99867 * 140.22898 * 9 8 7 11 11 C 1.52993 * 109.47287 * 302.37748 * 10 9 8 12 12 O 1.42892 * 109.47276 * 66.76233 * 11 10 9 13 13 C 1.42902 * 114.00327 * 180.02562 * 12 11 10 14 14 C 1.50700 * 109.47510 * 180.02562 * 13 12 11 15 15 H 1.08001 * 119.99578 * 359.97438 * 14 13 12 16 16 C 1.37874 * 120.00306 * 180.02562 * 14 13 12 17 17 N 1.31511 * 120.00419 * 179.97438 * 16 14 13 18 18 Si 1.86805 * 119.99832 * 359.97438 * 16 14 13 19 19 H 1.48495 * 109.47236 * 90.00174 * 18 16 14 20 20 H 1.48504 * 109.47312 * 210.00378 * 18 16 14 21 21 H 1.48498 * 109.47010 * 330.00191 * 18 16 14 22 22 C 1.47901 * 107.88297 * 18.41589 * 9 8 7 23 23 C 1.51574 * 131.56958 * 180.29508 * 7 6 5 24 24 H 1.09001 * 109.46848 * 304.55915 * 1 2 3 25 25 H 1.09000 * 109.47423 * 64.55933 * 1 2 3 26 26 H 1.09005 * 109.47124 * 184.56378 * 1 2 3 27 27 H 1.09001 * 109.46995 * 240.00490 * 2 1 3 28 28 H 1.09001 * 109.47556 * 120.00340 * 2 1 3 29 29 H 1.08001 * 119.86865 * 0.05186 * 4 3 2 30 30 H 1.08000 * 120.05876 * 179.91410 * 5 4 3 31 31 H 1.07993 * 119.96014 * 180.02562 * 6 5 4 32 32 H 1.09001 * 109.47025 * 62.37693 * 10 9 8 33 33 H 1.09006 * 109.47266 * 182.37389 * 10 9 8 34 34 H 1.09004 * 109.47220 * 186.76601 * 11 10 9 35 35 H 1.09003 * 109.47239 * 306.76257 * 11 10 9 36 36 H 1.09005 * 109.47071 * 300.00072 * 13 12 11 37 37 H 1.09000 * 109.47207 * 59.99816 * 13 12 11 38 38 H 0.97003 * 120.00224 * 179.97438 * 17 16 14 39 39 H 1.09000 * 110.78065 * 214.41406 * 22 9 8 40 40 H 1.08992 * 110.77994 * 90.98302 * 22 9 8 41 41 H 1.09000 * 110.73657 * 45.71828 * 23 7 6 42 42 H 1.09000 * 110.89541 * 282.46328 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 1.1423 2.4649 0.1441 5 6 1.5949 3.7713 0.1447 6 6 2.9460 4.0329 0.0022 7 6 3.8400 2.9928 -0.1392 8 6 3.3945 1.6761 -0.1463 9 7 4.4626 0.7870 -0.3184 10 6 4.3009 -0.4008 0.5307 11 6 4.1896 0.0300 1.9945 12 8 2.9739 0.7559 2.1862 13 6 2.7716 1.2071 3.5270 14 6 1.4665 1.9556 3.6137 15 1 0.8531 2.0752 2.7328 16 6 1.0560 2.4886 4.8172 17 7 -0.0826 3.1423 4.8927 18 14 2.1174 2.2824 6.3405 19 1 3.0641 3.4219 6.4422 20 1 1.2514 2.2491 7.5464 21 1 2.8804 1.0121 6.2438 22 6 5.7113 1.5080 0.0110 23 6 5.3466 2.9770 -0.3042 24 1 -0.3633 0.5830 0.8463 25 1 -0.3634 0.4414 -0.9280 26 1 -0.3634 -1.0245 0.0818 27 1 1.8932 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 0.0878 2.2610 0.2575 30 1 0.8951 4.5862 0.2564 31 1 3.3009 5.0528 0.0028 32 1 3.3967 -0.9352 0.2394 33 1 5.1645 -1.0547 0.4090 34 1 4.1906 -0.8527 2.6341 35 1 5.0369 0.6658 2.2515 36 1 2.7432 0.3491 4.1987 37 1 3.5894 1.8675 3.8155 38 1 -0.3716 3.5169 5.7395 39 1 6.5319 1.1691 -0.6213 40 1 5.9597 1.3890 1.0656 41 1 5.8199 3.6534 0.4075 42 1 5.6287 3.2341 -1.3252 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000566869552.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:45 Heat of formation + Delta-G solvation = 4.193510 kcal Electronic energy + Delta-G solvation = -23041.554806 eV Core-core repulsion = 19987.262881 eV Total energy + Delta-G solvation = -3054.291924 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.59716 -37.05046 -36.26467 -34.15777 -32.57400 -31.32909 -29.26574 -28.58878 -27.70872 -26.55016 -23.80637 -22.78250 -21.96994 -21.53533 -20.01814 -19.38468 -16.89347 -16.26895 -15.98004 -15.73944 -15.23728 -14.65337 -14.35994 -14.29226 -13.90005 -13.45730 -13.21336 -12.89719 -12.64142 -12.51831 -12.15862 -12.04392 -11.67611 -11.51866 -11.34849 -11.23774 -11.13875 -10.99719 -10.83467 -10.74254 -10.38277 -10.13402 -10.00199 -9.81365 -9.34625 -9.07684 -8.79629 -8.43827 -7.74672 -6.97360 -6.07089 -4.03794 2.14839 2.20562 3.24458 3.31748 3.32974 4.03386 4.38141 4.55882 4.71078 4.91634 5.00834 5.23628 5.24893 5.41580 5.45209 5.50616 5.62335 5.66586 5.74785 5.85377 5.86280 5.87309 5.94330 5.98084 6.10182 6.16491 6.22530 6.31538 6.40166 6.51565 6.60785 6.61797 6.74345 6.80247 7.01660 7.06959 7.13161 7.30055 7.42082 7.52368 7.65005 7.92528 8.02481 8.69058 9.08676 9.53799 11.05432 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.016257 B = 0.007751 C = 0.007287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.927102 B = 3611.369687 C = 3841.288427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.083 4.083 3 C -0.037 4.037 4 C -0.085 4.085 5 C -0.126 4.126 6 C -0.096 4.096 7 C -0.146 4.146 8 C 0.108 3.892 9 N -0.473 5.473 10 C 0.033 3.967 11 C 0.016 3.984 12 O -0.354 6.354 13 C 0.166 3.834 14 C -0.504 4.504 15 H 0.092 0.908 16 C 0.073 3.927 17 N -0.895 5.895 18 Si 0.868 3.132 19 H -0.277 1.277 20 H -0.284 1.284 21 H -0.269 1.269 22 C 0.039 3.961 23 C -0.078 4.078 24 H 0.069 0.931 25 H 0.047 0.953 26 H 0.047 0.953 27 H 0.057 0.943 28 H 0.093 0.907 29 H 0.122 0.878 30 H 0.114 0.886 31 H 0.107 0.893 32 H 0.102 0.898 33 H 0.082 0.918 34 H 0.043 0.957 35 H 0.039 0.961 36 H -0.003 1.003 37 H -0.009 1.009 38 H 0.264 0.736 39 H 0.086 0.914 40 H 0.061 0.939 41 H 0.072 0.928 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.579 -4.286 -10.299 14.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.120 4.120 3 C -0.040 4.040 4 C -0.104 4.104 5 C -0.145 4.145 6 C -0.115 4.115 7 C -0.149 4.149 8 C 0.011 3.989 9 N -0.188 5.188 10 C -0.093 4.093 11 C -0.063 4.063 12 O -0.273 6.273 13 C 0.091 3.909 14 C -0.542 4.542 15 H 0.110 0.890 16 C -0.128 4.128 17 N -0.534 5.534 18 Si 0.695 3.305 19 H -0.203 1.203 20 H -0.210 1.210 21 H -0.194 1.194 22 C -0.087 4.087 23 C -0.116 4.116 24 H 0.088 0.912 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.075 0.925 28 H 0.111 0.889 29 H 0.140 0.860 30 H 0.132 0.868 31 H 0.125 0.875 32 H 0.120 0.880 33 H 0.100 0.900 34 H 0.061 0.939 35 H 0.057 0.943 36 H 0.014 0.986 37 H 0.008 0.992 38 H 0.074 0.926 39 H 0.104 0.896 40 H 0.079 0.921 41 H 0.090 0.910 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 8.401 -4.398 -10.839 14.401 hybrid contribution 0.828 0.223 2.235 2.393 sum 9.228 -4.175 -8.604 13.290 Atomic orbital electron populations 1.21845 0.95989 1.01137 1.01889 1.20682 0.95653 0.94095 1.01533 1.18840 0.90061 0.95262 0.99811 1.20733 0.99316 0.91838 0.98505 1.20809 0.94889 0.96737 1.02086 1.20098 0.92772 0.97118 1.01487 1.20185 0.94591 0.93546 1.06543 1.19016 0.91004 0.90803 0.98097 1.60837 1.01495 1.06866 1.49563 1.22744 1.03846 0.92985 0.89751 1.23056 0.90277 0.96031 0.96923 1.88198 1.36281 1.72286 1.30559 1.20601 0.97192 0.93140 0.79989 1.20903 1.03006 1.32810 0.97489 0.89020 1.24719 0.94972 0.94993 0.98154 1.69857 1.20939 1.36649 1.25991 0.86980 0.80907 0.78954 0.83626 1.20257 1.20980 1.19434 1.23259 0.92177 0.92842 1.00421 1.21163 0.92788 0.96034 1.01601 0.91225 0.93409 0.93427 0.92489 0.88925 0.85992 0.86796 0.87494 0.88049 0.89973 0.93932 0.94274 0.98555 0.99174 0.92617 0.89612 0.92113 0.90973 0.90457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.40 8.65 37.15 0.32 -2.07 16 2 C -0.08 -1.39 4.22 -27.89 -0.12 -1.51 16 3 C -0.04 -0.70 3.92 -104.31 -0.41 -1.11 16 4 C -0.09 -1.67 7.86 -39.68 -0.31 -1.99 16 5 C -0.13 -2.42 10.06 -39.53 -0.40 -2.82 16 6 C -0.10 -1.76 10.03 -39.67 -0.40 -2.15 16 7 C -0.15 -2.62 6.23 -104.04 -0.65 -3.27 16 8 C 0.11 1.96 4.33 -83.41 -0.36 1.60 16 9 N -0.47 -7.41 5.29 -169.03 -0.89 -8.30 16 10 C 0.03 0.48 5.54 -3.83 -0.02 0.46 16 11 C 0.02 0.28 5.62 37.15 0.21 0.48 16 12 O -0.35 -7.62 4.54 -35.23 -0.16 -7.78 16 13 C 0.17 4.12 4.76 36.01 0.17 4.29 16 14 C -0.50 -14.28 9.99 -34.44 -0.34 -14.62 16 15 H 0.09 2.76 6.86 -52.49 -0.36 2.40 16 16 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 17 N -0.90 -27.04 13.96 55.43 0.77 -26.27 16 18 Si 0.87 21.53 27.47 -169.99 -4.67 16.86 16 19 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 21 H -0.27 -6.47 6.54 56.52 0.37 -6.10 16 22 C 0.04 0.53 6.70 -2.43 -0.02 0.52 16 23 C -0.08 -1.12 7.04 -26.61 -0.19 -1.31 16 24 H 0.07 1.27 6.87 -51.93 -0.36 0.91 16 25 H 0.05 0.68 8.06 -51.93 -0.42 0.27 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.06 0.86 7.63 -51.93 -0.40 0.47 16 28 H 0.09 1.67 4.83 -51.93 -0.25 1.42 16 29 H 0.12 2.32 5.84 -52.49 -0.31 2.02 16 30 H 0.11 2.02 8.06 -52.49 -0.42 1.59 16 31 H 0.11 1.71 8.06 -52.49 -0.42 1.28 16 32 H 0.10 1.47 4.43 -51.93 -0.23 1.24 16 33 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.04 0.67 5.89 -51.93 -0.31 0.37 16 36 H 0.00 -0.08 7.20 -51.93 -0.37 -0.45 16 37 H -0.01 -0.24 7.57 -51.93 -0.39 -0.63 16 38 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 39 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 40 H 0.06 0.85 5.65 -51.93 -0.29 0.55 16 41 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 42 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 316.54 15.07 4.77 4.77 Total: -1.00 -31.00 316.54 -9.02 -40.02 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -6.23 Total: 2.20 kcal Atomic # 6 Polarization: -18.90 SS G_CDS: -2.61 Total: -21.51 kcal Atomic # 7 Polarization: -34.45 SS G_CDS: -0.12 Total: -34.57 kcal Atomic # 8 Polarization: -7.62 SS G_CDS: -0.16 Total: -7.78 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.67 Total: 16.86 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -31.00 -9.02 -40.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566869552.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.212 kcal (2) G-P(sol) polarization free energy of solvation -30.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds