Wall clock time and date at job start Mon Mar 30 2020 01:57:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50703 * 109.47282 * 2 1 4 4 C 1.37951 * 119.90061 * 6.92316 * 3 2 1 5 5 C 1.38256 * 120.26379 * 180.02562 * 4 3 2 6 6 C 1.38354 * 119.88755 * 359.89960 * 5 4 3 7 7 C 1.37878 * 120.07474 * 359.95479 * 6 5 4 8 8 C 1.39004 * 120.48305 * 0.29826 * 7 6 5 9 9 N 1.40033 * 110.95028 * 179.20938 * 8 7 6 10 10 C 1.46901 * 110.99867 * 140.22898 * 9 8 7 11 11 C 1.52993 * 109.47287 * 302.37748 * 10 9 8 12 12 O 1.42892 * 109.47276 * 66.76233 * 11 10 9 13 13 C 1.42902 * 114.00327 * 180.02562 * 12 11 10 14 14 C 1.50700 * 109.47510 * 180.02562 * 13 12 11 15 15 H 1.08001 * 119.99578 * 359.97438 * 14 13 12 16 16 C 1.37874 * 120.00306 * 180.02562 * 14 13 12 17 17 N 1.31511 * 120.00419 * 179.97438 * 16 14 13 18 18 Si 1.86805 * 119.99832 * 359.97438 * 16 14 13 19 19 H 1.48495 * 109.47236 * 90.00174 * 18 16 14 20 20 H 1.48504 * 109.47312 * 210.00378 * 18 16 14 21 21 H 1.48498 * 109.47010 * 330.00191 * 18 16 14 22 22 C 1.47901 * 107.88297 * 18.41589 * 9 8 7 23 23 C 1.51574 * 131.56958 * 180.29508 * 7 6 5 24 24 H 1.09001 * 109.46848 * 304.55915 * 1 2 3 25 25 H 1.09000 * 109.47423 * 64.55933 * 1 2 3 26 26 H 1.09005 * 109.47124 * 184.56378 * 1 2 3 27 27 H 1.09001 * 109.46995 * 240.00490 * 2 1 3 28 28 H 1.09001 * 109.47556 * 120.00340 * 2 1 3 29 29 H 1.08001 * 119.86865 * 0.05186 * 4 3 2 30 30 H 1.08000 * 120.05876 * 179.91410 * 5 4 3 31 31 H 1.07993 * 119.96014 * 180.02562 * 6 5 4 32 32 H 1.09001 * 109.47025 * 62.37693 * 10 9 8 33 33 H 1.09006 * 109.47266 * 182.37389 * 10 9 8 34 34 H 1.09004 * 109.47220 * 186.76601 * 11 10 9 35 35 H 1.09003 * 109.47239 * 306.76257 * 11 10 9 36 36 H 1.09005 * 109.47071 * 300.00072 * 13 12 11 37 37 H 1.09000 * 109.47207 * 59.99816 * 13 12 11 38 38 H 0.97003 * 120.00224 * 179.97438 * 17 16 14 39 39 H 1.09000 * 110.78065 * 214.41406 * 22 9 8 40 40 H 1.08992 * 110.77994 * 90.98302 * 22 9 8 41 41 H 1.09000 * 110.73657 * 45.71828 * 23 7 6 42 42 H 1.09000 * 110.89541 * 282.46328 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 1.1423 2.4649 0.1441 5 6 1.5949 3.7713 0.1447 6 6 2.9460 4.0329 0.0022 7 6 3.8400 2.9928 -0.1392 8 6 3.3945 1.6761 -0.1463 9 7 4.4626 0.7870 -0.3184 10 6 4.3009 -0.4008 0.5307 11 6 4.1896 0.0300 1.9945 12 8 2.9739 0.7559 2.1862 13 6 2.7716 1.2071 3.5270 14 6 1.4665 1.9556 3.6137 15 1 0.8531 2.0752 2.7328 16 6 1.0560 2.4886 4.8172 17 7 -0.0826 3.1423 4.8927 18 14 2.1174 2.2824 6.3405 19 1 3.0641 3.4219 6.4422 20 1 1.2514 2.2491 7.5464 21 1 2.8804 1.0121 6.2438 22 6 5.7113 1.5080 0.0110 23 6 5.3466 2.9770 -0.3042 24 1 -0.3633 0.5830 0.8463 25 1 -0.3634 0.4414 -0.9280 26 1 -0.3634 -1.0245 0.0818 27 1 1.8932 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 0.0878 2.2610 0.2575 30 1 0.8951 4.5862 0.2564 31 1 3.3009 5.0528 0.0028 32 1 3.3967 -0.9352 0.2394 33 1 5.1645 -1.0547 0.4090 34 1 4.1906 -0.8527 2.6341 35 1 5.0369 0.6658 2.2515 36 1 2.7432 0.3491 4.1987 37 1 3.5894 1.8675 3.8155 38 1 -0.3716 3.5169 5.7395 39 1 6.5319 1.1691 -0.6213 40 1 5.9597 1.3890 1.0656 41 1 5.8199 3.6534 0.4075 42 1 5.6287 3.2341 -1.3252 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000566869552.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:44 Heat of formation + Delta-G solvation = -14.150612 kcal Electronic energy + Delta-G solvation = -23042.350267 eV Core-core repulsion = 19987.262881 eV Total energy + Delta-G solvation = -3055.087385 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.88523 -38.59059 -37.66684 -35.55542 -34.68165 -32.65141 -30.66963 -30.19002 -29.29135 -27.97199 -25.14930 -24.02257 -23.89563 -22.97185 -21.32926 -20.70319 -18.97539 -17.56797 -17.48186 -17.18562 -16.73346 -16.20925 -15.98771 -15.84912 -15.29812 -14.91890 -14.63614 -14.49060 -14.30220 -13.81469 -13.55883 -13.42451 -13.09521 -13.00302 -12.91648 -12.67762 -12.53679 -12.47972 -12.33128 -12.23638 -11.89089 -11.69757 -11.47545 -11.40386 -11.10244 -10.86501 -10.62528 -10.18672 -9.17511 -8.31786 -8.27129 -6.29752 0.72597 0.78089 1.29645 1.30305 1.39862 2.30630 2.74902 3.04590 3.11877 3.33816 3.75597 3.81636 4.08276 4.13081 4.17252 4.24432 4.36051 4.45889 4.48644 4.50851 4.55128 4.59750 4.66192 4.68862 4.81225 4.90233 4.94407 4.98763 5.03552 5.10194 5.11095 5.21787 5.28899 5.38759 5.43243 5.55586 5.72436 5.75020 5.89591 6.00420 6.07259 6.21626 6.55475 6.71774 6.87645 7.32247 8.88117 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.016257 B = 0.007751 C = 0.007287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.927102 B = 3611.369687 C = 3841.288427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.077 4.077 3 C -0.051 4.051 4 C -0.108 4.108 5 C -0.151 4.151 6 C -0.109 4.109 7 C -0.162 4.162 8 C 0.100 3.900 9 N -0.472 5.472 10 C 0.038 3.962 11 C 0.006 3.994 12 O -0.364 6.364 13 C 0.178 3.822 14 C -0.512 4.512 15 H 0.058 0.942 16 C 0.016 3.984 17 N -0.939 5.939 18 Si 0.934 3.066 19 H -0.271 1.271 20 H -0.279 1.279 21 H -0.253 1.253 22 C 0.040 3.960 23 C -0.076 4.076 24 H 0.034 0.966 25 H 0.058 0.942 26 H 0.066 0.934 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.111 0.889 30 H 0.114 0.886 31 H 0.124 0.876 32 H 0.100 0.900 33 H 0.122 0.878 34 H 0.057 0.943 35 H 0.044 0.956 36 H 0.000 1.000 37 H -0.012 1.012 38 H 0.266 0.734 39 H 0.121 0.879 40 H 0.059 0.941 41 H 0.080 0.920 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.671 -5.828 -10.493 16.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.113 4.113 3 C -0.054 4.054 4 C -0.126 4.126 5 C -0.170 4.170 6 C -0.127 4.127 7 C -0.165 4.165 8 C 0.003 3.997 9 N -0.187 5.187 10 C -0.088 4.088 11 C -0.072 4.072 12 O -0.282 6.282 13 C 0.102 3.898 14 C -0.550 4.550 15 H 0.077 0.923 16 C -0.181 4.181 17 N -0.580 5.580 18 Si 0.758 3.242 19 H -0.196 1.196 20 H -0.204 1.204 21 H -0.176 1.176 22 C -0.086 4.086 23 C -0.113 4.113 24 H 0.053 0.947 25 H 0.077 0.923 26 H 0.085 0.915 27 H 0.096 0.904 28 H 0.100 0.900 29 H 0.129 0.871 30 H 0.132 0.868 31 H 0.142 0.858 32 H 0.118 0.882 33 H 0.140 0.860 34 H 0.075 0.925 35 H 0.062 0.938 36 H 0.018 0.982 37 H 0.005 0.995 38 H 0.075 0.925 39 H 0.139 0.861 40 H 0.077 0.923 41 H 0.099 0.901 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 11.514 -5.959 -11.050 17.035 hybrid contribution -0.143 0.694 2.181 2.293 sum 11.371 -5.265 -8.870 15.352 Atomic orbital electron populations 1.21772 0.95830 1.01731 1.00937 1.20656 0.95811 0.93076 1.01800 1.19065 0.90676 0.95816 0.99831 1.20812 0.99302 0.92677 0.99824 1.20995 0.95924 0.96807 1.03303 1.20359 0.92460 0.98479 1.01444 1.20719 0.96857 0.93347 1.05573 1.19257 0.91355 0.91763 0.97350 1.60860 1.01348 1.06885 1.49608 1.22841 1.05640 0.92867 0.87483 1.23389 0.88454 0.96126 0.99265 1.88207 1.38754 1.72959 1.28326 1.20243 0.94961 0.92651 0.81929 1.21149 1.04265 1.33029 0.96576 0.92338 1.25577 0.96260 0.94674 1.01634 1.70009 1.22958 1.38041 1.27003 0.85913 0.79235 0.79673 0.79333 1.19604 1.20403 1.17641 1.23430 0.91975 0.92030 1.01131 1.21277 0.89944 0.97019 1.03098 0.94687 0.92312 0.91483 0.90431 0.90005 0.87069 0.86838 0.85764 0.88217 0.86041 0.92497 0.93844 0.98248 0.99451 0.92474 0.86144 0.92306 0.90120 0.88446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.71 8.65 71.98 0.62 -4.09 16 2 C -0.08 -2.56 4.22 29.85 0.13 -2.43 16 3 C -0.05 -1.96 3.92 -19.66 -0.08 -2.04 16 4 C -0.11 -4.47 7.86 22.21 0.17 -4.29 16 5 C -0.15 -6.14 10.06 22.30 0.22 -5.92 16 6 C -0.11 -4.04 10.03 22.21 0.22 -3.81 16 7 C -0.16 -5.65 6.23 -19.49 -0.12 -5.77 16 8 C 0.10 3.53 4.33 38.28 0.17 3.69 16 9 N -0.47 -13.31 5.29 -688.68 -3.64 -16.96 16 10 C 0.04 0.96 5.54 86.30 0.48 1.44 16 11 C 0.01 0.18 5.62 71.98 0.40 0.59 16 12 O -0.36 -15.35 4.54 -148.98 -0.68 -16.02 16 13 C 0.18 8.73 4.76 71.24 0.34 9.07 16 14 C -0.51 -29.73 9.99 25.60 0.26 -29.47 16 15 H 0.06 3.72 6.86 -2.91 -0.02 3.70 16 16 C 0.02 0.93 5.47 84.65 0.46 1.39 16 17 N -0.94 -58.46 13.96 21.45 0.30 -58.16 16 18 Si 0.93 44.21 27.47 68.60 1.88 46.10 16 19 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 20 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 21 H -0.25 -11.16 6.54 99.48 0.65 -10.51 16 22 C 0.04 0.92 6.70 86.66 0.58 1.50 16 23 C -0.08 -1.95 7.04 30.67 0.22 -1.73 16 24 H 0.03 1.36 6.87 -2.39 -0.02 1.34 16 25 H 0.06 1.73 8.06 -2.39 -0.02 1.71 16 26 H 0.07 1.86 8.14 -2.38 -0.02 1.84 16 27 H 0.08 2.23 7.63 -2.39 -0.02 2.21 16 28 H 0.08 2.90 4.83 -2.39 -0.01 2.89 16 29 H 0.11 4.67 5.84 -2.91 -0.02 4.65 16 30 H 0.11 4.37 8.06 -2.91 -0.02 4.35 16 31 H 0.12 3.98 8.06 -2.91 -0.02 3.96 16 32 H 0.10 2.61 4.43 -2.39 -0.01 2.60 16 33 H 0.12 2.20 8.14 -2.38 -0.02 2.18 16 34 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.04 1.35 5.89 -2.39 -0.01 1.34 16 36 H 0.00 0.00 7.20 -2.38 -0.02 -0.02 16 37 H -0.01 -0.60 7.57 -2.39 -0.02 -0.62 16 38 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 39 H 0.12 2.00 8.14 -2.39 -0.02 1.98 16 40 H 0.06 1.41 5.65 -2.39 -0.01 1.39 16 41 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 42 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -68.40 316.54 2.89 -65.51 By element: Atomic # 1 Polarization: 20.47 SS G_CDS: 0.96 Total: 21.42 kcal Atomic # 6 Polarization: -45.96 SS G_CDS: 4.07 Total: -41.88 kcal Atomic # 7 Polarization: -71.78 SS G_CDS: -3.35 Total: -75.12 kcal Atomic # 8 Polarization: -15.35 SS G_CDS: -0.68 Total: -16.02 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 1.88 Total: 46.10 kcal Total: -68.40 2.89 -65.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566869552.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.361 kcal (2) G-P(sol) polarization free energy of solvation -68.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds