Wall clock time and date at job start Mon Mar 30 2020 01:56:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47270 * 2 1 4 4 C 1.53004 * 109.33395 * 298.21991 * 3 2 1 5 5 N 1.46902 * 109.47339 * 305.60388 * 4 3 2 6 6 C 1.46895 * 111.00157 * 173.96520 * 5 4 3 7 7 C 1.50695 * 109.47120 * 180.02562 * 6 5 4 8 8 H 1.07995 * 120.00092 * 359.97438 * 7 6 5 9 9 C 1.37882 * 119.99940 * 180.02562 * 7 6 5 10 10 N 1.31520 * 120.00112 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 120.00120 * 179.97438 * 9 7 6 12 12 H 1.48493 * 109.47161 * 89.99792 * 11 9 7 13 13 H 1.48501 * 109.47137 * 210.00271 * 11 9 7 14 14 H 1.48506 * 109.47252 * 329.99895 * 11 9 7 15 15 O 1.42722 * 109.33854 * 57.89518 * 3 2 1 16 16 C 1.43224 * 113.11169 * 171.85633 * 15 3 2 17 17 C 1.52977 * 108.46949 * 289.27639 * 16 15 3 18 18 C 1.50741 * 109.76719 * 49.16639 * 17 16 15 19 19 C 1.38596 * 118.76537 * 163.21845 * 18 17 16 20 20 C 1.38068 * 120.27780 * 179.84883 * 19 18 17 21 21 C 1.38268 * 119.86355 * 359.96625 * 20 19 18 22 22 C 1.38052 * 119.89470 * 0.07399 * 21 20 19 23 23 C 1.37901 * 121.35413 * 343.15367 * 18 17 16 24 24 H 1.08998 * 109.47074 * 295.42677 * 1 2 3 25 25 H 1.08998 * 109.47033 * 55.42109 * 1 2 3 26 26 H 1.08998 * 109.47121 * 175.42338 * 1 2 3 27 27 H 1.09002 * 109.46821 * 240.00062 * 2 1 3 28 28 H 1.08996 * 109.47270 * 120.00010 * 2 1 3 29 29 H 1.09002 * 109.46408 * 185.60763 * 4 3 2 30 30 H 1.08996 * 109.47511 * 65.60906 * 4 3 2 31 31 H 1.00896 * 111.00266 * 297.92427 * 5 4 3 32 32 H 1.09003 * 109.47288 * 300.00555 * 6 5 4 33 33 H 1.09007 * 109.47050 * 60.00390 * 6 5 4 34 34 H 0.96995 * 120.00184 * 179.97438 * 10 9 7 35 35 H 1.08999 * 109.63463 * 48.97048 * 16 15 3 36 36 H 1.08998 * 109.63260 * 169.37688 * 16 15 3 37 37 H 1.08996 * 109.41947 * 169.25873 * 17 16 15 38 38 H 1.09003 * 109.42100 * 289.12952 * 17 16 15 39 39 H 1.07999 * 119.86573 * 359.83366 * 19 18 17 40 40 H 1.08005 * 120.07047 * 179.97438 * 20 19 18 41 41 H 1.07998 * 120.05028 * 180.02562 * 21 20 19 42 42 H 1.07991 * 119.85067 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.5653 2.1477 -1.2721 5 7 1.9762 1.3674 -2.4470 6 6 1.4158 1.9370 -3.6796 7 6 1.8574 1.1116 -4.8605 8 1 2.4913 0.2502 -4.7104 9 6 1.4529 1.4567 -6.1327 10 7 0.6814 2.5059 -6.3155 11 14 2.0009 0.4339 -7.5966 12 1 1.0123 -0.6463 -7.8436 13 1 2.0970 1.3012 -8.7982 14 1 3.3291 -0.1663 -7.3119 15 8 1.5228 2.1267 1.1408 16 6 2.0947 3.4271 1.3235 17 6 3.5481 3.2589 1.7701 18 6 4.2522 2.2862 0.8589 19 6 5.6378 2.2547 0.8599 20 6 6.3146 1.3739 0.0399 21 6 5.6072 0.5191 -0.7852 22 6 4.2270 0.5505 -0.7874 23 6 3.5462 1.4357 0.0343 24 1 -0.3633 0.4412 0.9281 25 1 -0.3633 0.5832 -0.8461 26 1 -0.3633 -1.0244 -0.0820 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 2.0087 3.1421 -1.3233 30 1 0.4789 2.2347 -1.2555 31 1 2.9814 1.3012 -2.5037 32 1 0.3274 1.9323 -3.6200 33 1 1.7686 2.9614 -3.7996 34 1 0.3971 2.7489 -7.2105 35 1 2.0617 3.9771 0.3830 36 1 1.5346 3.9697 2.0851 37 1 4.0534 4.2238 1.7302 38 1 3.5717 2.8795 2.7917 39 1 6.1904 2.9220 1.5046 40 1 7.3944 1.3524 0.0431 41 1 6.1335 -0.1713 -1.4275 42 1 3.6752 -0.1176 -1.4318 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000568256898.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:24 Heat of formation + Delta-G solvation = -26.628717 kcal Electronic energy + Delta-G solvation = -22114.506505 eV Core-core repulsion = 19058.878029 eV Total energy + Delta-G solvation = -3055.628476 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.66932 -37.63939 -35.83146 -33.73513 -32.41609 -31.87912 -30.73616 -29.04576 -27.68121 -25.40618 -23.77483 -23.64606 -22.63492 -21.38793 -20.50746 -18.91006 -17.17171 -16.50436 -16.16191 -15.51630 -15.10884 -15.05445 -14.60372 -14.16192 -13.94047 -13.73273 -13.40852 -13.10062 -12.79541 -12.73096 -12.40852 -12.36991 -11.82040 -11.71748 -11.53800 -11.36492 -11.27975 -10.98525 -10.79901 -10.67105 -10.54426 -10.25457 -10.15499 -9.97304 -9.39128 -9.14516 -8.61953 -8.48797 -8.45628 -7.31901 -6.04005 -4.06022 1.45069 1.50294 3.31537 3.37337 3.40593 3.83058 3.92059 4.42449 4.68159 4.74592 4.87851 5.03961 5.13211 5.19352 5.24484 5.31626 5.32695 5.47659 5.50619 5.57352 5.71707 5.78555 5.84703 5.86724 5.95474 6.07124 6.11526 6.17207 6.24464 6.33747 6.40016 6.56292 6.59944 6.69862 6.78452 6.81612 7.12375 7.21820 7.36575 7.41513 7.76063 8.10751 8.34623 8.57247 9.02639 9.58814 11.07166 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.018283 B = 0.005420 C = 0.004797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.092238 B = 5164.923692 C = 5835.304333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.093 4.093 3 C 0.160 3.840 4 C 0.043 3.957 5 N -0.682 5.682 6 C 0.195 3.805 7 C -0.513 4.513 8 H 0.062 0.938 9 C 0.056 3.944 10 N -0.898 5.898 11 Si 0.899 3.101 12 H -0.280 1.280 13 H -0.288 1.288 14 H -0.274 1.274 15 O -0.364 6.364 16 C 0.053 3.947 17 C -0.112 4.112 18 C -0.079 4.079 19 C -0.125 4.125 20 C -0.122 4.122 21 C -0.123 4.123 22 C -0.102 4.102 23 C -0.098 4.098 24 H 0.051 0.949 25 H 0.064 0.936 26 H 0.048 0.952 27 H 0.095 0.905 28 H 0.054 0.946 29 H 0.018 0.982 30 H 0.080 0.920 31 H 0.330 0.670 32 H 0.029 0.971 33 H -0.015 1.015 34 H 0.261 0.739 35 H 0.058 0.942 36 H 0.095 0.905 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.117 0.883 40 H 0.118 0.882 41 H 0.123 0.877 42 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.917 -0.442 16.206 17.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.130 4.130 3 C 0.120 3.880 4 C -0.087 4.087 5 N -0.315 5.315 6 C 0.068 3.932 7 C -0.551 4.551 8 H 0.080 0.920 9 C -0.145 4.145 10 N -0.537 5.537 11 Si 0.726 3.274 12 H -0.206 1.206 13 H -0.213 1.213 14 H -0.199 1.199 15 O -0.282 6.282 16 C -0.024 4.024 17 C -0.149 4.149 18 C -0.079 4.079 19 C -0.143 4.143 20 C -0.140 4.140 21 C -0.141 4.141 22 C -0.120 4.120 23 C -0.098 4.098 24 H 0.070 0.930 25 H 0.083 0.917 26 H 0.067 0.933 27 H 0.113 0.887 28 H 0.073 0.927 29 H 0.036 0.964 30 H 0.098 0.902 31 H 0.148 0.852 32 H 0.047 0.953 33 H 0.002 0.998 34 H 0.071 0.929 35 H 0.077 0.923 36 H 0.113 0.887 37 H 0.098 0.902 38 H 0.099 0.901 39 H 0.135 0.865 40 H 0.136 0.864 41 H 0.141 0.859 42 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 6.167 -0.873 16.262 17.414 hybrid contribution 1.142 0.638 -1.179 1.761 sum 7.310 -0.235 15.083 16.762 Atomic orbital electron populations 1.21669 0.95221 1.01196 1.02017 1.21457 0.96868 0.92290 1.02401 1.20359 0.87615 0.94100 0.85892 1.22387 1.01080 0.94265 0.91005 1.60788 1.15228 1.52556 1.02946 1.19546 0.95616 0.92940 0.85050 1.21148 1.30975 1.12277 0.90729 0.91982 1.24985 0.95227 0.95274 0.99051 1.69964 1.35485 1.26026 1.22224 0.86492 0.79058 0.79961 0.81846 1.20583 1.21342 1.19864 1.88094 1.64513 1.28961 1.46638 1.22620 0.92649 0.85916 1.01231 1.21090 0.96515 0.98367 0.98933 1.19493 0.93549 0.97320 0.97555 1.20967 0.93416 0.99824 1.00110 1.21065 0.99553 0.96443 0.96925 1.21154 0.94318 0.99447 0.99179 1.21375 0.94315 0.98394 0.97943 1.20181 0.96153 0.96545 0.96961 0.93026 0.91718 0.93275 0.88680 0.92688 0.96384 0.90178 0.85166 0.95321 0.99767 0.92917 0.92346 0.88661 0.90162 0.90077 0.86500 0.86374 0.85921 0.84143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 9.48 37.16 0.35 -1.81 16 2 C -0.09 -1.43 4.53 -26.73 -0.12 -1.55 16 3 C 0.16 2.55 0.55 -91.79 -0.05 2.50 16 4 C 0.04 0.80 4.03 -3.82 -0.02 0.78 16 5 N -0.68 -14.36 4.95 -115.06 -0.57 -14.92 16 6 C 0.19 5.09 5.43 -4.98 -0.03 5.07 16 7 C -0.51 -14.38 9.32 -34.44 -0.32 -14.70 16 8 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 9 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 10 N -0.90 -26.82 13.29 55.43 0.74 -26.09 16 11 Si 0.90 21.62 29.54 -169.99 -5.02 16.60 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 13 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 14 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 15 O -0.36 -5.56 9.51 -35.23 -0.34 -5.90 16 16 C 0.05 0.66 6.73 37.15 0.25 0.91 16 17 C -0.11 -1.29 6.00 -27.88 -0.17 -1.46 16 18 C -0.08 -1.10 5.78 -104.59 -0.60 -1.71 16 19 C -0.13 -1.56 9.67 -39.51 -0.38 -1.95 16 20 C -0.12 -1.50 10.05 -39.63 -0.40 -1.90 16 21 C -0.12 -1.65 10.05 -39.64 -0.40 -2.04 16 22 C -0.10 -1.54 7.17 -39.50 -0.28 -1.83 16 23 C -0.10 -1.51 4.68 -104.62 -0.49 -2.00 16 24 H 0.05 0.74 7.77 -51.93 -0.40 0.34 16 25 H 0.06 1.09 6.36 -51.93 -0.33 0.76 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.09 1.54 5.85 -51.93 -0.30 1.23 16 28 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.02 0.35 6.73 -51.93 -0.35 0.00 16 30 H 0.08 1.53 6.64 -51.93 -0.34 1.19 16 31 H 0.33 6.79 5.81 -39.29 -0.23 6.56 16 32 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 33 H -0.02 -0.44 8.14 -51.93 -0.42 -0.86 16 34 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 35 H 0.06 0.79 6.32 -51.93 -0.33 0.46 16 36 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 37 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 40 H 0.12 1.15 8.06 -52.48 -0.42 0.73 16 41 H 0.12 1.41 8.06 -52.49 -0.42 0.98 16 42 H 0.14 2.18 5.49 -52.49 -0.29 1.89 16 LS Contribution 325.78 15.07 4.91 4.91 Total: -1.00 -30.27 325.78 -9.38 -39.65 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: -6.35 Total: 5.94 kcal Atomic # 6 Polarization: -17.43 SS G_CDS: -2.75 Total: -20.19 kcal Atomic # 7 Polarization: -41.18 SS G_CDS: 0.17 Total: -41.01 kcal Atomic # 8 Polarization: -5.56 SS G_CDS: -0.34 Total: -5.90 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.27 -9.38 -39.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568256898.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.024 kcal (2) G-P(sol) polarization free energy of solvation -30.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds