Wall clock time and date at job start Mon Mar 30 2020 01:56:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47270 * 2 1 4 4 C 1.53004 * 109.33395 * 298.21991 * 3 2 1 5 5 N 1.46902 * 109.47339 * 305.60388 * 4 3 2 6 6 C 1.46895 * 111.00157 * 173.96520 * 5 4 3 7 7 C 1.50695 * 109.47120 * 180.02562 * 6 5 4 8 8 H 1.07995 * 120.00092 * 359.97438 * 7 6 5 9 9 C 1.37882 * 119.99940 * 180.02562 * 7 6 5 10 10 N 1.31520 * 120.00112 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 120.00120 * 179.97438 * 9 7 6 12 12 H 1.48493 * 109.47161 * 89.99792 * 11 9 7 13 13 H 1.48501 * 109.47137 * 210.00271 * 11 9 7 14 14 H 1.48506 * 109.47252 * 329.99895 * 11 9 7 15 15 O 1.42722 * 109.33854 * 57.89518 * 3 2 1 16 16 C 1.43224 * 113.11169 * 171.85633 * 15 3 2 17 17 C 1.52977 * 108.46949 * 289.27639 * 16 15 3 18 18 C 1.50741 * 109.76719 * 49.16639 * 17 16 15 19 19 C 1.38596 * 118.76537 * 163.21845 * 18 17 16 20 20 C 1.38068 * 120.27780 * 179.84883 * 19 18 17 21 21 C 1.38268 * 119.86355 * 359.96625 * 20 19 18 22 22 C 1.38052 * 119.89470 * 0.07399 * 21 20 19 23 23 C 1.37901 * 121.35413 * 343.15367 * 18 17 16 24 24 H 1.08998 * 109.47074 * 295.42677 * 1 2 3 25 25 H 1.08998 * 109.47033 * 55.42109 * 1 2 3 26 26 H 1.08998 * 109.47121 * 175.42338 * 1 2 3 27 27 H 1.09002 * 109.46821 * 240.00062 * 2 1 3 28 28 H 1.08996 * 109.47270 * 120.00010 * 2 1 3 29 29 H 1.09002 * 109.46408 * 185.60763 * 4 3 2 30 30 H 1.08996 * 109.47511 * 65.60906 * 4 3 2 31 31 H 1.00896 * 111.00266 * 297.92427 * 5 4 3 32 32 H 1.09003 * 109.47288 * 300.00555 * 6 5 4 33 33 H 1.09007 * 109.47050 * 60.00390 * 6 5 4 34 34 H 0.96995 * 120.00184 * 179.97438 * 10 9 7 35 35 H 1.08999 * 109.63463 * 48.97048 * 16 15 3 36 36 H 1.08998 * 109.63260 * 169.37688 * 16 15 3 37 37 H 1.08996 * 109.41947 * 169.25873 * 17 16 15 38 38 H 1.09003 * 109.42100 * 289.12952 * 17 16 15 39 39 H 1.07999 * 119.86573 * 359.83366 * 19 18 17 40 40 H 1.08005 * 120.07047 * 179.97438 * 20 19 18 41 41 H 1.07998 * 120.05028 * 180.02562 * 21 20 19 42 42 H 1.07991 * 119.85067 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.5653 2.1477 -1.2721 5 7 1.9762 1.3674 -2.4470 6 6 1.4158 1.9370 -3.6796 7 6 1.8574 1.1116 -4.8605 8 1 2.4913 0.2502 -4.7104 9 6 1.4529 1.4567 -6.1327 10 7 0.6814 2.5059 -6.3155 11 14 2.0009 0.4339 -7.5966 12 1 1.0123 -0.6463 -7.8436 13 1 2.0970 1.3012 -8.7982 14 1 3.3291 -0.1663 -7.3119 15 8 1.5228 2.1267 1.1408 16 6 2.0947 3.4271 1.3235 17 6 3.5481 3.2589 1.7701 18 6 4.2522 2.2862 0.8589 19 6 5.6378 2.2547 0.8599 20 6 6.3146 1.3739 0.0399 21 6 5.6072 0.5191 -0.7852 22 6 4.2270 0.5505 -0.7874 23 6 3.5462 1.4357 0.0343 24 1 -0.3633 0.4412 0.9281 25 1 -0.3633 0.5832 -0.8461 26 1 -0.3633 -1.0244 -0.0820 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 2.0087 3.1421 -1.3233 30 1 0.4789 2.2347 -1.2555 31 1 2.9814 1.3012 -2.5037 32 1 0.3274 1.9323 -3.6200 33 1 1.7686 2.9614 -3.7996 34 1 0.3971 2.7489 -7.2105 35 1 2.0617 3.9771 0.3830 36 1 1.5346 3.9697 2.0851 37 1 4.0534 4.2238 1.7302 38 1 3.5717 2.8795 2.7917 39 1 6.1904 2.9220 1.5046 40 1 7.3944 1.3524 0.0431 41 1 6.1335 -0.1713 -1.4275 42 1 3.6752 -0.1176 -1.4318 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000568256898.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:24 Heat of formation + Delta-G solvation = -44.313724 kcal Electronic energy + Delta-G solvation = -22115.273384 eV Core-core repulsion = 19058.878029 eV Total energy + Delta-G solvation = -3056.395356 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.80698 -38.73507 -37.34234 -35.39930 -34.03757 -33.24489 -31.84318 -30.14111 -29.43790 -27.03545 -25.12109 -24.74891 -24.00553 -23.14600 -21.60345 -20.14202 -18.60841 -18.22773 -17.36096 -16.94486 -16.51889 -16.34479 -16.16320 -15.49595 -15.12192 -15.02945 -14.59586 -14.37825 -14.35066 -14.20436 -13.89094 -13.50017 -13.35172 -13.08128 -12.96727 -12.73451 -12.64780 -12.52486 -12.39358 -12.21081 -12.02414 -11.69095 -11.52781 -11.39420 -11.21553 -10.66968 -10.48803 -9.70107 -9.51005 -9.13828 -8.23228 -6.34482 0.40941 0.47266 1.41035 1.43061 1.53948 2.39070 2.74722 2.81880 3.10466 3.52709 3.61558 3.76047 3.85706 3.92519 4.07037 4.24745 4.26968 4.29659 4.48317 4.50567 4.58340 4.61506 4.65911 4.72214 4.78227 4.85291 4.96009 5.03259 5.07929 5.13402 5.14988 5.22016 5.23852 5.39574 5.50912 5.57924 5.58907 5.64667 5.69910 5.98092 6.11652 6.19570 6.38819 6.64993 6.85484 7.36340 8.88729 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.018283 B = 0.005420 C = 0.004797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.092238 B = 5164.923692 C = 5835.304333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.092 4.092 3 C 0.171 3.829 4 C 0.048 3.952 5 N -0.669 5.669 6 C 0.211 3.789 7 C -0.532 4.532 8 H 0.067 0.933 9 C 0.001 3.999 10 N -0.935 5.935 11 Si 0.973 3.027 12 H -0.272 1.272 13 H -0.283 1.283 14 H -0.261 1.261 15 O -0.374 6.374 16 C 0.044 3.956 17 C -0.108 4.108 18 C -0.092 4.092 19 C -0.126 4.126 20 C -0.120 4.120 21 C -0.132 4.132 22 C -0.121 4.121 23 C -0.122 4.122 24 H 0.058 0.942 25 H 0.039 0.961 26 H 0.062 0.938 27 H 0.083 0.917 28 H 0.066 0.934 29 H 0.009 0.991 30 H 0.066 0.934 31 H 0.335 0.665 32 H 0.001 0.999 33 H -0.046 1.046 34 H 0.265 0.735 35 H 0.042 0.958 36 H 0.123 0.877 37 H 0.103 0.897 38 H 0.096 0.904 39 H 0.147 0.853 40 H 0.148 0.852 41 H 0.138 0.862 42 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.894 -0.919 17.248 19.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.129 4.129 3 C 0.131 3.869 4 C -0.082 4.082 5 N -0.303 5.303 6 C 0.083 3.917 7 C -0.570 4.570 8 H 0.085 0.915 9 C -0.197 4.197 10 N -0.575 5.575 11 Si 0.798 3.202 12 H -0.198 1.198 13 H -0.208 1.208 14 H -0.186 1.186 15 O -0.292 6.292 16 C -0.032 4.032 17 C -0.144 4.144 18 C -0.093 4.093 19 C -0.144 4.144 20 C -0.137 4.137 21 C -0.150 4.150 22 C -0.139 4.139 23 C -0.123 4.123 24 H 0.077 0.923 25 H 0.058 0.942 26 H 0.081 0.919 27 H 0.101 0.899 28 H 0.085 0.915 29 H 0.028 0.972 30 H 0.085 0.915 31 H 0.155 0.845 32 H 0.019 0.981 33 H -0.028 1.028 34 H 0.074 0.926 35 H 0.061 0.939 36 H 0.141 0.859 37 H 0.121 0.879 38 H 0.114 0.886 39 H 0.164 0.836 40 H 0.166 0.834 41 H 0.156 0.844 42 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 8.153 -1.354 17.331 19.201 hybrid contribution 0.542 0.848 -1.424 1.744 sum 8.695 -0.506 15.907 18.135 Atomic orbital electron populations 1.21616 0.95116 1.01630 1.01235 1.21428 0.96899 0.92216 1.02355 1.20089 0.88507 0.93789 0.84517 1.22379 1.00212 0.94017 0.91606 1.60647 1.15412 1.52332 1.01874 1.19191 0.93910 0.91442 0.87173 1.21491 1.31237 1.12619 0.91629 0.91475 1.25963 0.95016 0.96411 1.02304 1.70100 1.36546 1.27725 1.23163 0.85322 0.79109 0.78203 0.77609 1.19780 1.20834 1.18557 1.88066 1.65131 1.30199 1.45799 1.22881 0.94195 0.84711 1.01440 1.21130 0.95324 0.99003 0.98978 1.19863 0.94566 0.97287 0.97536 1.21346 0.92949 0.99945 1.00120 1.21457 1.01108 0.95383 0.95799 1.21412 0.93717 1.00136 0.99760 1.21370 0.95310 0.98814 0.98410 1.20193 0.95557 0.97997 0.98508 0.92298 0.94184 0.91942 0.89871 0.91489 0.97248 0.91523 0.84548 0.98135 1.02833 0.92643 0.93916 0.85877 0.87894 0.88583 0.83550 0.83429 0.84406 0.85546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.23 9.48 71.98 0.68 -3.55 16 2 C -0.09 -2.86 4.53 30.60 0.14 -2.72 16 3 C 0.17 5.52 0.55 -11.55 -0.01 5.52 16 4 C 0.05 1.87 4.03 86.30 0.35 2.21 16 5 N -0.67 -29.49 4.95 -517.93 -2.56 -32.06 16 6 C 0.21 11.57 5.43 85.56 0.46 12.03 16 7 C -0.53 -30.49 9.32 25.60 0.24 -30.26 16 8 H 0.07 3.70 7.81 -2.91 -0.02 3.68 16 9 C 0.00 0.07 5.46 84.65 0.46 0.53 16 10 N -0.94 -57.14 13.29 21.45 0.28 -56.86 16 11 Si 0.97 44.40 29.54 68.60 2.03 46.42 16 12 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 13 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 14 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 15 O -0.37 -11.24 9.51 -148.98 -1.42 -12.66 16 16 C 0.04 1.05 6.73 71.97 0.48 1.54 16 17 C -0.11 -2.21 6.00 29.85 0.18 -2.03 16 18 C -0.09 -2.40 5.78 -19.85 -0.11 -2.52 16 19 C -0.13 -2.76 9.67 22.31 0.22 -2.55 16 20 C -0.12 -2.61 10.05 22.24 0.22 -2.38 16 21 C -0.13 -3.36 10.05 22.23 0.22 -3.13 16 22 C -0.12 -3.64 7.17 22.32 0.16 -3.48 16 23 C -0.12 -3.72 4.68 -19.86 -0.09 -3.82 16 24 H 0.06 1.68 7.77 -2.39 -0.02 1.66 16 25 H 0.04 1.40 6.36 -2.39 -0.02 1.38 16 26 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 27 H 0.08 2.77 5.85 -2.39 -0.01 2.76 16 28 H 0.07 1.91 8.14 -2.39 -0.02 1.90 16 29 H 0.01 0.38 6.73 -2.39 -0.02 0.36 16 30 H 0.07 2.73 6.64 -2.39 -0.02 2.71 16 31 H 0.34 14.32 5.81 -89.70 -0.52 13.80 16 32 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 33 H -0.05 -2.75 8.14 -2.38 -0.02 -2.77 16 34 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 35 H 0.04 1.15 6.32 -2.39 -0.02 1.13 16 36 H 0.12 2.21 8.14 -2.39 -0.02 2.19 16 37 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.15 2.30 8.06 -2.91 -0.02 2.28 16 40 H 0.15 2.30 8.06 -2.91 -0.02 2.28 16 41 H 0.14 2.95 8.06 -2.91 -0.02 2.93 16 42 H 0.13 4.05 5.49 -2.92 -0.02 4.04 16 Total: -1.00 -66.31 325.78 2.43 -63.88 By element: Atomic # 1 Polarization: 25.38 SS G_CDS: 0.49 Total: 25.87 kcal Atomic # 6 Polarization: -38.21 SS G_CDS: 3.61 Total: -34.61 kcal Atomic # 7 Polarization: -86.64 SS G_CDS: -2.28 Total: -88.92 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: -1.42 Total: -12.66 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.42 kcal Total: -66.31 2.43 -63.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568256898.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.570 kcal (2) G-P(sol) polarization free energy of solvation -66.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds