Wall clock time and date at job start Mon Mar 30 2020 01:56:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.47036 * 2 1 4 4 C 1.53000 * 109.20650 * 305.52111 * 3 2 1 5 5 N 1.46907 * 109.46961 * 303.65050 * 4 3 2 6 6 C 1.46898 * 110.99857 * 179.97438 * 5 4 3 7 7 C 1.50701 * 109.47158 * 179.97438 * 6 5 4 8 8 H 1.07999 * 119.99997 * 0.02562 * 7 6 5 9 9 C 1.37871 * 120.00116 * 180.02562 * 7 6 5 10 10 N 1.31516 * 120.00332 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 120.00056 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47404 * 89.99542 * 11 9 7 13 13 H 1.48501 * 109.47102 * 209.99604 * 11 9 7 14 14 H 1.48503 * 109.47076 * 329.99381 * 11 9 7 15 15 O 1.42725 * 109.33870 * 185.92395 * 3 2 1 16 16 C 1.43203 * 113.14955 * 291.56847 * 15 3 2 17 17 C 1.52970 * 108.48669 * 289.37375 * 16 15 3 18 18 C 1.50741 * 109.76540 * 49.23755 * 17 16 15 19 19 C 1.38594 * 118.76795 * 163.02579 * 18 17 16 20 20 C 1.38066 * 120.27697 * 179.55355 * 19 18 17 21 21 C 1.38267 * 119.86302 * 359.97438 * 20 19 18 22 22 C 1.38051 * 119.89302 * 0.09752 * 21 20 19 23 23 C 1.37902 * 121.34769 * 342.76619 * 18 17 16 24 24 H 1.08997 * 109.47013 * 53.93813 * 1 2 3 25 25 H 1.08995 * 109.46745 * 173.94188 * 1 2 3 26 26 H 1.09004 * 109.46959 * 293.93923 * 1 2 3 27 27 H 1.08994 * 109.47227 * 239.99918 * 2 1 3 28 28 H 1.09000 * 109.46677 * 120.00213 * 2 1 3 29 29 H 1.08997 * 109.46965 * 63.64636 * 4 3 2 30 30 H 1.08991 * 109.47023 * 183.64931 * 4 3 2 31 31 H 1.00901 * 110.99666 * 303.95089 * 5 4 3 32 32 H 1.08993 * 109.47101 * 299.99494 * 6 5 4 33 33 H 1.09000 * 109.47235 * 59.99713 * 6 5 4 34 34 H 0.97000 * 120.00563 * 180.02562 * 10 9 7 35 35 H 1.08996 * 109.63713 * 169.67304 * 16 15 3 36 36 H 1.08998 * 109.79950 * 49.16748 * 16 15 3 37 37 H 1.09003 * 109.42129 * 289.15008 * 17 16 15 38 38 H 1.09001 * 109.42379 * 169.33038 * 17 16 15 39 39 H 1.07997 * 119.86279 * 359.53642 * 19 18 17 40 40 H 1.08002 * 120.07091 * 179.97438 * 20 19 18 41 41 H 1.07991 * 120.05035 * 180.11541 * 21 20 19 42 42 H 1.08006 * 119.84583 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4164 2.1969 -1.1760 5 7 1.7216 1.4910 -2.4277 6 6 1.1368 2.1879 -3.5810 7 6 1.4707 1.4367 -4.8441 8 1 2.0582 0.5318 -4.7948 9 6 1.0262 1.9045 -6.0624 10 7 0.3103 3.0061 -6.1224 11 14 1.4394 0.9729 -7.6279 12 1 0.3768 -0.0269 -7.9041 13 1 1.5287 1.9267 -8.7626 14 1 2.7415 0.2784 -7.4615 15 8 3.4605 1.4416 -0.1390 16 6 4.1380 0.9154 1.0076 17 6 3.9980 1.9166 2.1557 18 6 2.5547 2.3264 2.3014 19 6 2.1497 2.9349 3.4789 20 6 0.8373 3.3313 3.6420 21 6 -0.0768 3.1208 2.6262 22 6 0.3255 2.5134 1.4535 23 6 1.6424 2.1122 1.2896 24 1 -0.3633 0.6049 -0.8307 25 1 -0.3633 -1.0219 -0.1085 26 1 -0.3633 0.4170 0.9393 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 0.3359 2.2487 -1.0423 30 1 1.8261 3.2059 -1.2186 31 1 2.7171 1.3731 -2.5427 32 1 0.0544 2.2393 -3.4639 33 1 1.5441 3.1972 -3.6406 34 1 -0.0028 3.3351 -6.9795 35 1 5.1929 0.7701 0.7751 36 1 3.6920 -0.0366 1.2954 37 1 4.6052 2.7969 1.9450 38 1 4.3392 1.4554 3.0825 39 1 2.8637 3.0994 4.2723 40 1 0.5252 3.8047 4.5612 41 1 -1.1037 3.4313 2.7498 42 1 -0.3891 2.3498 0.6604 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000568256899.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:28 Heat of formation + Delta-G solvation = -25.169327 kcal Electronic energy + Delta-G solvation = -21884.352111 eV Core-core repulsion = 18828.786919 eV Total energy + Delta-G solvation = -3055.565192 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.76633 -37.71402 -35.84536 -33.79505 -32.50061 -32.00647 -30.44414 -29.41443 -27.46054 -25.45886 -23.96110 -23.77820 -22.37593 -21.56314 -20.61718 -18.81952 -17.23445 -16.58574 -16.00098 -15.73329 -15.32810 -14.90468 -14.56001 -14.37548 -13.95366 -13.71882 -13.63893 -13.20734 -12.91921 -12.53514 -12.42663 -12.26253 -12.00798 -11.78883 -11.49217 -11.34051 -11.25791 -11.04677 -10.91691 -10.64704 -10.61889 -10.46292 -10.09900 -9.80207 -9.35305 -9.13570 -8.72844 -8.57191 -8.42980 -7.20792 -5.98628 -3.99977 1.32431 1.36190 3.35490 3.41005 3.45296 3.70448 3.92160 4.46303 4.60608 4.65646 4.79724 4.94310 5.05041 5.11889 5.17791 5.23268 5.37108 5.37735 5.39985 5.59469 5.61052 5.68356 5.70402 5.83512 5.87851 5.97576 6.02116 6.09620 6.19206 6.25257 6.33564 6.43821 6.49392 6.56655 6.67325 6.70930 6.98138 7.29666 7.38190 7.49694 7.83618 8.17648 8.47972 8.68334 9.09741 9.64701 11.12619 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.026805 B = 0.004328 C = 0.004086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.315252 B = 6468.609458 C = 6850.827481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.124 4.124 3 C 0.160 3.840 4 C 0.076 3.924 5 N -0.682 5.682 6 C 0.194 3.806 7 C -0.510 4.510 8 H 0.062 0.938 9 C 0.055 3.945 10 N -0.899 5.899 11 Si 0.898 3.102 12 H -0.281 1.281 13 H -0.288 1.288 14 H -0.274 1.274 15 O -0.360 6.360 16 C 0.056 3.944 17 C -0.114 4.114 18 C -0.076 4.076 19 C -0.123 4.123 20 C -0.122 4.122 21 C -0.126 4.126 22 C -0.105 4.105 23 C -0.094 4.094 24 H 0.073 0.927 25 H 0.051 0.949 26 H 0.050 0.950 27 H 0.090 0.910 28 H 0.049 0.951 29 H 0.081 0.919 30 H 0.024 0.976 31 H 0.337 0.663 32 H 0.026 0.974 33 H -0.014 1.014 34 H 0.260 0.740 35 H 0.096 0.904 36 H 0.057 0.943 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.118 0.882 40 H 0.119 0.881 41 H 0.122 0.878 42 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.268 -2.157 20.507 20.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C 0.120 3.880 4 C -0.054 4.054 5 N -0.313 5.313 6 C 0.067 3.933 7 C -0.549 4.549 8 H 0.081 0.919 9 C -0.146 4.146 10 N -0.539 5.539 11 Si 0.726 3.274 12 H -0.207 1.207 13 H -0.214 1.214 14 H -0.198 1.198 15 O -0.279 6.279 16 C -0.021 4.021 17 C -0.152 4.152 18 C -0.076 4.076 19 C -0.141 4.141 20 C -0.140 4.140 21 C -0.144 4.144 22 C -0.123 4.123 23 C -0.094 4.094 24 H 0.092 0.908 25 H 0.071 0.929 26 H 0.069 0.931 27 H 0.109 0.891 28 H 0.067 0.933 29 H 0.099 0.901 30 H 0.042 0.958 31 H 0.154 0.846 32 H 0.044 0.956 33 H 0.003 0.997 34 H 0.070 0.930 35 H 0.114 0.886 36 H 0.075 0.925 37 H 0.101 0.899 38 H 0.099 0.901 39 H 0.136 0.864 40 H 0.137 0.863 41 H 0.140 0.860 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 2.742 -2.405 20.253 20.579 hybrid contribution 0.570 0.428 -0.584 0.922 sum 3.312 -1.977 19.669 20.044 Atomic orbital electron populations 1.21955 0.95222 1.02064 1.01893 1.21839 0.96995 0.95151 1.02196 1.20437 0.81004 0.95062 0.91527 1.21966 0.99316 0.94509 0.89649 1.60681 1.18221 1.51032 1.01331 1.19545 0.95076 0.91924 0.86750 1.21179 1.33282 1.09721 0.90687 0.91940 1.24981 0.95304 0.95104 0.99209 1.69966 1.36715 1.21770 1.25438 0.86493 0.78801 0.79461 0.82603 1.20680 1.21377 1.19845 1.88148 1.17608 1.83915 1.38212 1.22577 0.97957 0.95443 0.86142 1.21131 0.93280 1.00803 0.99940 1.19512 0.95276 0.99095 0.93698 1.20996 0.96233 0.99846 0.97070 1.21058 0.93537 1.00445 0.98995 1.21105 0.99639 0.99770 0.93867 1.21280 0.95529 0.97578 0.97920 1.20178 0.93983 0.99199 0.96087 0.90839 0.92941 0.93110 0.89127 0.93261 0.90084 0.95770 0.84626 0.95584 0.99670 0.92993 0.88623 0.92512 0.89895 0.90147 0.86355 0.86304 0.86046 0.85158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 8.41 37.16 0.31 -1.87 16 2 C -0.12 -1.85 4.55 -26.73 -0.12 -1.97 16 3 C 0.16 2.51 0.63 -91.79 -0.06 2.46 16 4 C 0.08 1.41 3.91 -3.82 -0.01 1.40 16 5 N -0.68 -14.89 5.66 -115.06 -0.65 -15.54 16 6 C 0.19 5.15 5.44 -4.98 -0.03 5.13 16 7 C -0.51 -14.63 9.32 -34.44 -0.32 -14.95 16 8 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 9 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 10 N -0.90 -27.18 13.29 55.43 0.74 -26.45 16 11 Si 0.90 21.96 29.54 -169.99 -5.02 16.94 16 12 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 13 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 14 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 15 O -0.36 -5.79 9.64 -35.23 -0.34 -6.13 16 16 C 0.06 0.67 6.72 37.14 0.25 0.92 16 17 C -0.11 -1.24 6.00 -27.88 -0.17 -1.41 16 18 C -0.08 -0.97 5.78 -104.59 -0.60 -1.58 16 19 C -0.12 -1.38 9.67 -39.51 -0.38 -1.76 16 20 C -0.12 -1.32 10.05 -39.63 -0.40 -1.72 16 21 C -0.13 -1.46 10.05 -39.64 -0.40 -1.85 16 22 C -0.11 -1.41 7.02 -39.50 -0.28 -1.69 16 23 C -0.09 -1.34 4.68 -104.62 -0.49 -1.83 16 24 H 0.07 1.17 6.01 -51.93 -0.31 0.86 16 25 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.05 0.65 5.75 -51.93 -0.30 0.35 16 27 H 0.09 1.51 7.68 -51.93 -0.40 1.11 16 28 H 0.05 0.66 6.74 -51.93 -0.35 0.31 16 29 H 0.08 1.46 4.73 -51.93 -0.25 1.22 16 30 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.34 7.43 8.22 -39.29 -0.32 7.10 16 32 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 33 H -0.01 -0.42 8.14 -51.93 -0.42 -0.84 16 34 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 35 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.06 0.65 6.34 -51.93 -0.33 0.32 16 37 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 40 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 41 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 42 H 0.13 1.72 5.18 -52.48 -0.27 1.45 16 LS Contribution 325.06 15.07 4.90 4.90 Total: -1.00 -31.00 325.06 -9.47 -40.47 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -6.30 Total: 5.05 kcal Atomic # 6 Polarization: -16.45 SS G_CDS: -2.80 Total: -19.24 kcal Atomic # 7 Polarization: -42.07 SS G_CDS: 0.09 Total: -41.98 kcal Atomic # 8 Polarization: -5.79 SS G_CDS: -0.34 Total: -6.13 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -31.00 -9.47 -40.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568256899.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.301 kcal (2) G-P(sol) polarization free energy of solvation -30.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds