Wall clock time and date at job start Mon Mar 30 2020 01:56:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.47036 * 2 1 4 4 C 1.53000 * 109.20650 * 305.52111 * 3 2 1 5 5 N 1.46907 * 109.46961 * 303.65050 * 4 3 2 6 6 C 1.46898 * 110.99857 * 179.97438 * 5 4 3 7 7 C 1.50701 * 109.47158 * 179.97438 * 6 5 4 8 8 H 1.07999 * 119.99997 * 0.02562 * 7 6 5 9 9 C 1.37871 * 120.00116 * 180.02562 * 7 6 5 10 10 N 1.31516 * 120.00332 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 120.00056 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47404 * 89.99542 * 11 9 7 13 13 H 1.48501 * 109.47102 * 209.99604 * 11 9 7 14 14 H 1.48503 * 109.47076 * 329.99381 * 11 9 7 15 15 O 1.42725 * 109.33870 * 185.92395 * 3 2 1 16 16 C 1.43203 * 113.14955 * 291.56847 * 15 3 2 17 17 C 1.52970 * 108.48669 * 289.37375 * 16 15 3 18 18 C 1.50741 * 109.76540 * 49.23755 * 17 16 15 19 19 C 1.38594 * 118.76795 * 163.02579 * 18 17 16 20 20 C 1.38066 * 120.27697 * 179.55355 * 19 18 17 21 21 C 1.38267 * 119.86302 * 359.97438 * 20 19 18 22 22 C 1.38051 * 119.89302 * 0.09752 * 21 20 19 23 23 C 1.37902 * 121.34769 * 342.76619 * 18 17 16 24 24 H 1.08997 * 109.47013 * 53.93813 * 1 2 3 25 25 H 1.08995 * 109.46745 * 173.94188 * 1 2 3 26 26 H 1.09004 * 109.46959 * 293.93923 * 1 2 3 27 27 H 1.08994 * 109.47227 * 239.99918 * 2 1 3 28 28 H 1.09000 * 109.46677 * 120.00213 * 2 1 3 29 29 H 1.08997 * 109.46965 * 63.64636 * 4 3 2 30 30 H 1.08991 * 109.47023 * 183.64931 * 4 3 2 31 31 H 1.00901 * 110.99666 * 303.95089 * 5 4 3 32 32 H 1.08993 * 109.47101 * 299.99494 * 6 5 4 33 33 H 1.09000 * 109.47235 * 59.99713 * 6 5 4 34 34 H 0.97000 * 120.00563 * 180.02562 * 10 9 7 35 35 H 1.08996 * 109.63713 * 169.67304 * 16 15 3 36 36 H 1.08998 * 109.79950 * 49.16748 * 16 15 3 37 37 H 1.09003 * 109.42129 * 289.15008 * 17 16 15 38 38 H 1.09001 * 109.42379 * 169.33038 * 17 16 15 39 39 H 1.07997 * 119.86279 * 359.53642 * 19 18 17 40 40 H 1.08002 * 120.07091 * 179.97438 * 20 19 18 41 41 H 1.07991 * 120.05035 * 180.11541 * 21 20 19 42 42 H 1.08006 * 119.84583 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4164 2.1969 -1.1760 5 7 1.7216 1.4910 -2.4277 6 6 1.1368 2.1879 -3.5810 7 6 1.4707 1.4367 -4.8441 8 1 2.0582 0.5318 -4.7948 9 6 1.0262 1.9045 -6.0624 10 7 0.3103 3.0061 -6.1224 11 14 1.4394 0.9729 -7.6279 12 1 0.3768 -0.0269 -7.9041 13 1 1.5287 1.9267 -8.7626 14 1 2.7415 0.2784 -7.4615 15 8 3.4605 1.4416 -0.1390 16 6 4.1380 0.9154 1.0076 17 6 3.9980 1.9166 2.1557 18 6 2.5547 2.3264 2.3014 19 6 2.1497 2.9349 3.4789 20 6 0.8373 3.3313 3.6420 21 6 -0.0768 3.1208 2.6262 22 6 0.3255 2.5134 1.4535 23 6 1.6424 2.1122 1.2896 24 1 -0.3633 0.6049 -0.8307 25 1 -0.3633 -1.0219 -0.1085 26 1 -0.3633 0.4170 0.9393 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 0.3359 2.2487 -1.0423 30 1 1.8261 3.2059 -1.2186 31 1 2.7171 1.3731 -2.5427 32 1 0.0544 2.2393 -3.4639 33 1 1.5441 3.1972 -3.6406 34 1 -0.0028 3.3351 -6.9795 35 1 5.1929 0.7701 0.7751 36 1 3.6920 -0.0366 1.2954 37 1 4.6052 2.7969 1.9450 38 1 4.3392 1.4554 3.0825 39 1 2.8637 3.0994 4.2723 40 1 0.5252 3.8047 4.5612 41 1 -1.1037 3.4313 2.7498 42 1 -0.3891 2.3498 0.6604 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000568256899.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:28 Heat of formation + Delta-G solvation = -44.297276 kcal Electronic energy + Delta-G solvation = -21885.181561 eV Core-core repulsion = 18828.786919 eV Total energy + Delta-G solvation = -3056.394643 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.82665 -38.75748 -37.30681 -35.49238 -33.97918 -33.46899 -31.45465 -30.49299 -29.20358 -26.95442 -25.41430 -24.73725 -23.69354 -23.18304 -21.83279 -19.91061 -18.61313 -18.27197 -17.28381 -16.92697 -16.66265 -16.39332 -15.89924 -15.72542 -15.13480 -14.99644 -14.74608 -14.54876 -14.33601 -14.06333 -13.67510 -13.41873 -13.34830 -13.09308 -13.01051 -12.68234 -12.61881 -12.52731 -12.40014 -12.13090 -12.10491 -11.97099 -11.50084 -11.36676 -11.07231 -10.65831 -10.42887 -9.66584 -9.52237 -9.12141 -8.21741 -6.32813 0.39275 0.45064 1.41500 1.43665 1.55040 2.40775 2.74519 2.86087 3.11587 3.42273 3.68398 3.79068 3.84891 3.96082 4.09117 4.18175 4.26166 4.29921 4.43124 4.52837 4.57865 4.61592 4.64233 4.65573 4.76929 4.90005 4.95754 5.03599 5.05048 5.09280 5.11879 5.19561 5.25966 5.39485 5.45074 5.55446 5.59920 5.61436 5.68223 6.01465 6.09542 6.27782 6.43927 6.69773 6.88540 7.37947 8.90172 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.026805 B = 0.004328 C = 0.004086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.315252 B = 6468.609458 C = 6850.827481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.119 4.119 3 C 0.169 3.831 4 C 0.079 3.921 5 N -0.671 5.671 6 C 0.209 3.791 7 C -0.532 4.532 8 H 0.064 0.936 9 C 0.001 3.999 10 N -0.935 5.935 11 Si 0.974 3.026 12 H -0.272 1.272 13 H -0.282 1.282 14 H -0.264 1.264 15 O -0.390 6.390 16 C 0.048 3.952 17 C -0.110 4.110 18 C -0.089 4.089 19 C -0.123 4.123 20 C -0.119 4.119 21 C -0.131 4.131 22 C -0.123 4.123 23 C -0.117 4.117 24 H 0.047 0.953 25 H 0.061 0.939 26 H 0.065 0.935 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.082 0.918 30 H 0.003 0.997 31 H 0.336 0.664 32 H 0.002 0.998 33 H -0.046 1.046 34 H 0.265 0.735 35 H 0.114 0.886 36 H 0.063 0.937 37 H 0.083 0.917 38 H 0.111 0.889 39 H 0.147 0.853 40 H 0.149 0.851 41 H 0.141 0.859 42 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.079 -2.974 22.351 22.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.157 4.157 3 C 0.130 3.870 4 C -0.051 4.051 5 N -0.301 5.301 6 C 0.082 3.918 7 C -0.570 4.570 8 H 0.083 0.917 9 C -0.197 4.197 10 N -0.575 5.575 11 Si 0.799 3.201 12 H -0.197 1.197 13 H -0.207 1.207 14 H -0.188 1.188 15 O -0.309 6.309 16 C -0.028 4.028 17 C -0.147 4.147 18 C -0.089 4.089 19 C -0.141 4.141 20 C -0.137 4.137 21 C -0.149 4.149 22 C -0.141 4.141 23 C -0.118 4.118 24 H 0.066 0.934 25 H 0.080 0.920 26 H 0.084 0.916 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.100 0.900 30 H 0.021 0.979 31 H 0.153 0.847 32 H 0.020 0.980 33 H -0.028 1.028 34 H 0.074 0.926 35 H 0.132 0.868 36 H 0.081 0.919 37 H 0.101 0.899 38 H 0.129 0.871 39 H 0.165 0.835 40 H 0.167 0.833 41 H 0.159 0.841 42 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 3.560 -3.232 22.125 22.641 hybrid contribution 0.316 0.743 -1.053 1.327 sum 3.875 -2.489 21.072 21.569 Atomic orbital electron populations 1.21890 0.94849 1.02214 1.01610 1.21774 0.97269 0.94694 1.01945 1.20146 0.81079 0.95019 0.90806 1.22000 0.99785 0.93724 0.89606 1.60568 1.17814 1.50555 1.01135 1.19203 0.93585 0.90616 0.88443 1.21507 1.33726 1.10055 0.91763 0.91744 1.25958 0.94792 0.95942 1.02991 1.70098 1.37502 1.23318 1.26631 0.85310 0.79019 0.78111 0.77708 1.19704 1.20699 1.18782 1.88086 1.17680 1.84547 1.40588 1.22868 0.98546 0.95957 0.85448 1.21159 0.92238 1.00626 1.00702 1.19822 0.95928 0.99275 0.93907 1.21354 0.97060 0.98703 0.97002 1.21466 0.93209 0.99349 0.99654 1.21388 1.01007 0.99135 0.93348 1.21322 0.95283 0.98773 0.98726 1.20094 0.94885 1.00923 0.95868 0.93355 0.91987 0.91649 0.91317 0.91368 0.89976 0.97861 0.84706 0.97958 1.02848 0.92633 0.86773 0.91905 0.89879 0.87087 0.83509 0.83282 0.84121 0.86176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.26 8.41 71.98 0.61 -3.65 16 2 C -0.12 -3.57 4.55 30.60 0.14 -3.43 16 3 C 0.17 5.44 0.63 -11.55 -0.01 5.43 16 4 C 0.08 3.11 3.91 86.30 0.34 3.45 16 5 N -0.67 -30.87 5.66 -517.94 -2.93 -33.80 16 6 C 0.21 11.77 5.44 85.56 0.47 12.23 16 7 C -0.53 -31.37 9.32 25.60 0.24 -31.13 16 8 H 0.06 3.69 7.81 -2.91 -0.02 3.67 16 9 C 0.00 0.07 5.46 84.65 0.46 0.53 16 10 N -0.94 -57.85 13.29 21.45 0.28 -57.56 16 11 Si 0.97 45.27 29.54 68.60 2.03 47.30 16 12 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 13 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 14 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 15 O -0.39 -12.62 9.64 -148.98 -1.44 -14.05 16 16 C 0.05 1.08 6.72 71.97 0.48 1.56 16 17 C -0.11 -2.13 6.00 29.85 0.18 -1.95 16 18 C -0.09 -2.12 5.78 -19.85 -0.11 -2.24 16 19 C -0.12 -2.36 9.67 22.31 0.22 -2.15 16 20 C -0.12 -2.19 10.05 22.24 0.22 -1.96 16 21 C -0.13 -2.80 10.05 22.23 0.22 -2.58 16 22 C -0.12 -3.27 7.02 22.32 0.16 -3.12 16 23 C -0.12 -3.31 4.68 -19.86 -0.09 -3.40 16 24 H 0.05 1.62 6.01 -2.39 -0.01 1.60 16 25 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 26 H 0.06 1.67 5.75 -2.38 -0.01 1.65 16 27 H 0.07 2.33 7.68 -2.39 -0.02 2.32 16 28 H 0.07 1.77 6.74 -2.39 -0.02 1.75 16 29 H 0.08 3.20 4.73 -2.39 -0.01 3.19 16 30 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 31 H 0.34 15.52 8.22 -89.69 -0.74 14.79 16 32 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 33 H -0.05 -2.83 8.14 -2.39 -0.02 -2.85 16 34 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 35 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 36 H 0.06 1.32 6.34 -2.39 -0.02 1.30 16 37 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.15 1.93 8.06 -2.91 -0.02 1.91 16 40 H 0.15 1.81 8.06 -2.91 -0.02 1.79 16 41 H 0.14 2.36 8.06 -2.92 -0.02 2.33 16 42 H 0.12 3.31 5.18 -2.91 -0.02 3.30 16 Total: -1.00 -68.55 325.06 1.74 -66.81 By element: Atomic # 1 Polarization: 23.42 SS G_CDS: 0.28 Total: 23.70 kcal Atomic # 6 Polarization: -35.91 SS G_CDS: 3.52 Total: -32.40 kcal Atomic # 7 Polarization: -88.71 SS G_CDS: -2.64 Total: -91.36 kcal Atomic # 8 Polarization: -12.62 SS G_CDS: -1.44 Total: -14.05 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -68.55 1.74 -66.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568256899.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.508 kcal (2) G-P(sol) polarization free energy of solvation -68.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds