Wall clock time and date at job start Mon Mar 30 2020 01:15:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38290 * 119.96937 * 2 1 4 4 C 1.38246 * 120.10639 * 179.73154 * 3 2 1 5 5 C 1.38161 * 120.05656 * 0.54821 * 4 3 2 6 6 C 1.50704 * 120.02985 * 179.74961 * 5 4 3 7 7 N 1.46898 * 109.47041 * 259.72621 * 6 5 4 8 8 C 1.46906 * 110.99888 * 179.97438 * 7 6 5 9 9 C 1.50699 * 109.47140 * 179.97438 * 8 7 6 10 10 H 1.08003 * 119.99962 * 359.97438 * 9 8 7 11 11 C 1.37873 * 119.99861 * 180.02562 * 9 8 7 12 12 N 1.31522 * 120.00244 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 119.99980 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47229 * 89.99965 * 13 11 9 15 15 H 1.48500 * 109.46876 * 209.99805 * 13 11 9 16 16 H 1.48499 * 109.47161 * 329.99530 * 13 11 9 17 17 C 1.38712 * 119.94417 * 359.47684 * 5 4 3 18 18 O 1.35904 * 120.05619 * 180.22900 * 17 5 4 19 19 C 1.42907 * 116.99891 * 179.97438 * 18 17 5 20 20 C 1.52994 * 109.46855 * 180.02562 * 19 18 17 21 21 C 1.53002 * 117.49923 * 243.62064 * 20 19 18 22 22 C 1.52994 * 60.00161 * 252.51448 * 21 20 19 23 23 C 1.38116 * 119.97157 * 180.02562 * 2 1 3 24 24 H 1.09002 * 109.46681 * 269.97931 * 1 2 3 25 25 H 1.09001 * 109.47309 * 29.96928 * 1 2 3 26 26 H 1.08989 * 109.47386 * 149.97687 * 1 2 3 27 27 H 1.07997 * 119.94664 * 0.02682 * 3 2 1 28 28 H 1.08005 * 119.97049 * 180.27951 * 4 3 2 29 29 H 1.08997 * 109.46924 * 139.72532 * 6 5 4 30 30 H 1.08995 * 109.46962 * 19.72686 * 6 5 4 31 31 H 1.00901 * 111.00121 * 56.04537 * 7 6 5 32 32 H 1.09004 * 109.47040 * 299.99934 * 8 7 6 33 33 H 1.09000 * 109.47033 * 59.99886 * 8 7 6 34 34 H 0.96992 * 120.00038 * 179.97438 * 12 11 9 35 35 H 1.08994 * 109.46982 * 300.00187 * 19 18 17 36 36 H 1.08996 * 109.46891 * 59.99771 * 19 18 17 37 37 H 1.09002 * 115.55503 * 29.32871 * 20 19 18 38 38 H 1.09005 * 117.49776 * 0.02562 * 21 20 19 39 39 H 1.09002 * 117.50272 * 145.01787 * 21 20 19 40 40 H 1.09008 * 117.49748 * 252.51269 * 22 21 20 41 41 H 1.09003 * 117.50040 * 107.49099 * 22 21 20 42 42 H 1.08003 * 120.02710 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1980 0.0000 4 6 3.5803 1.2013 0.0056 5 6 4.2752 0.0072 -0.0002 6 6 5.7822 0.0115 0.0002 7 7 6.2729 -0.2272 -1.3637 8 6 7.7415 -0.2292 -1.4020 9 6 8.2068 -0.4771 -2.8137 10 1 7.4840 -0.6194 -3.6034 11 6 9.5554 -0.5232 -3.0969 12 7 10.4356 -0.3504 -2.1351 13 14 10.1322 -0.8298 -4.8470 14 1 10.2813 0.4678 -5.5535 15 1 11.4402 -1.5324 -4.8210 16 1 9.1338 -1.6686 -5.5575 17 6 3.5845 -1.1958 -0.0007 18 8 4.2658 -2.3718 -0.0018 19 6 3.4892 -3.5714 -0.0017 20 6 4.4230 -4.7833 -0.0022 21 6 4.3760 -5.7108 -1.2182 22 6 3.7832 -6.1681 0.1160 23 6 2.1970 -1.1965 -0.0005 24 1 -0.3633 -0.0004 1.0277 25 1 -0.3634 0.8903 -0.5134 26 1 -0.3633 -0.8897 -0.5141 27 1 1.6565 2.1325 0.0004 28 1 4.1176 2.1382 0.0102 29 1 6.1476 -0.7748 0.6607 30 1 6.1426 0.9781 0.3520 31 1 5.8956 0.4517 -2.0077 32 1 8.1151 0.7361 -1.0600 33 1 8.1208 -1.0169 -0.7511 34 1 11.3843 -0.3833 -2.3343 35 1 2.8611 -3.5975 0.8887 36 1 2.8597 -3.5967 -0.8911 37 1 5.3893 -4.6326 0.4791 38 1 3.6801 -5.4572 -2.0180 39 1 5.3115 -6.1702 -1.5373 40 1 4.3288 -6.9285 0.6749 41 1 2.6970 -6.2157 0.1942 42 1 1.6570 -2.1318 -0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000574313517.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:36 Heat of formation + Delta-G solvation = 0.978070 kcal Electronic energy + Delta-G solvation = -20753.860410 eV Core-core repulsion = 17699.429054 eV Total energy + Delta-G solvation = -3054.431356 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.13978 -38.02884 -36.55539 -35.40608 -33.02082 -31.74075 -29.94282 -28.38125 -27.53994 -25.87952 -23.34579 -22.48056 -22.32313 -21.35851 -20.97758 -20.12662 -17.53746 -16.57279 -16.10311 -15.78158 -15.41773 -15.06361 -14.56521 -14.36047 -14.03892 -13.84331 -13.65500 -13.28821 -13.05985 -12.88639 -12.35114 -12.14501 -12.06331 -11.60999 -11.57172 -11.35165 -11.18169 -11.03212 -10.90666 -10.74302 -10.63644 -10.52126 -10.39854 -9.96114 -9.84067 -9.12348 -8.58318 -8.41454 -7.83650 -7.13432 -5.96695 -3.97850 1.46951 1.65412 3.25314 3.35654 3.41291 3.46640 3.80078 3.89576 4.49177 4.66444 4.78698 4.81869 4.90907 4.94562 5.09486 5.21820 5.26905 5.32318 5.39097 5.43340 5.48662 5.49969 5.52744 5.64758 5.73849 5.79866 5.81928 5.85279 6.03202 6.05353 6.15936 6.18935 6.45642 6.52632 6.66649 6.77588 7.02048 7.35029 7.51291 7.70607 7.86746 8.21224 8.51718 8.71761 9.11759 9.66507 11.14528 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.012382 B = 0.004909 C = 0.003807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2260.751152 B = 5702.613670 C = 7353.911089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.058 4.058 3 C -0.163 4.163 4 C -0.076 4.076 5 C -0.107 4.107 6 C 0.107 3.893 7 N -0.678 5.678 8 C 0.195 3.805 9 C -0.509 4.509 10 H 0.061 0.939 11 C 0.055 3.945 12 N -0.899 5.899 13 Si 0.898 3.102 14 H -0.281 1.281 15 H -0.287 1.287 16 H -0.273 1.273 17 C 0.158 3.842 18 O -0.288 6.288 19 C 0.092 3.908 20 C -0.152 4.152 21 C -0.172 4.172 22 C -0.175 4.175 23 C -0.217 4.217 24 H 0.068 0.932 25 H 0.065 0.935 26 H 0.063 0.937 27 H 0.118 0.882 28 H 0.125 0.875 29 H 0.074 0.926 30 H 0.024 0.976 31 H 0.326 0.674 32 H -0.015 1.015 33 H 0.028 0.972 34 H 0.260 0.740 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.119 0.881 38 H 0.095 0.905 39 H 0.099 0.901 40 H 0.098 0.902 41 H 0.093 0.907 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.280 -4.363 6.582 20.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.058 4.058 3 C -0.181 4.181 4 C -0.094 4.094 5 C -0.108 4.108 6 C -0.023 4.023 7 N -0.308 5.308 8 C 0.069 3.931 9 C -0.548 4.548 10 H 0.080 0.920 11 C -0.146 4.146 12 N -0.539 5.539 13 Si 0.726 3.274 14 H -0.208 1.208 15 H -0.213 1.213 16 H -0.198 1.198 17 C 0.111 3.889 18 O -0.200 6.200 19 C 0.017 3.983 20 C -0.170 4.170 21 C -0.209 4.209 22 C -0.212 4.212 23 C -0.236 4.236 24 H 0.086 0.914 25 H 0.084 0.916 26 H 0.082 0.918 27 H 0.136 0.864 28 H 0.143 0.857 29 H 0.092 0.908 30 H 0.042 0.958 31 H 0.142 0.858 32 H 0.002 0.998 33 H 0.046 0.954 34 H 0.070 0.930 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.137 0.863 38 H 0.114 0.886 39 H 0.117 0.883 40 H 0.116 0.884 41 H 0.111 0.889 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -18.895 -5.109 6.668 20.678 hybrid contribution 0.451 0.720 -0.822 1.182 sum -18.444 -4.388 5.847 19.840 Atomic orbital electron populations 1.20765 0.91488 1.02546 1.02030 1.19586 0.95568 0.92627 0.98037 1.20813 0.94021 0.97183 1.06083 1.20909 0.93884 0.96962 0.97693 1.19417 0.96688 0.90153 1.04589 1.20655 0.88457 0.99241 0.93928 1.60676 1.11906 1.54378 1.03827 1.19553 0.80763 0.95306 0.97526 1.21191 0.91509 1.48173 0.93917 0.92041 1.24978 0.96726 0.95545 0.97333 1.69969 1.01404 1.50648 1.31894 0.86505 0.78005 0.78239 0.84699 1.20770 1.21282 1.19801 1.18745 0.89724 0.85874 0.94521 1.86251 1.34552 1.11514 1.87708 1.22225 0.92903 0.82552 1.00622 1.22073 1.01659 0.89256 1.04015 1.23067 1.03218 1.03157 0.91437 1.22976 1.00389 0.96550 1.01248 1.21026 0.92869 0.98557 1.11132 0.91361 0.91564 0.91844 0.86372 0.85661 0.90797 0.95808 0.85779 0.99768 0.95385 0.93008 0.92239 0.92219 0.86336 0.88638 0.88259 0.88368 0.88875 0.86015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.00 10.01 36.01 0.36 -0.64 16 2 C -0.06 -0.72 5.88 -104.65 -0.62 -1.34 16 3 C -0.16 -2.08 9.70 -39.56 -0.38 -2.47 16 4 C -0.08 -1.11 9.66 -39.61 -0.38 -1.49 16 5 C -0.11 -1.83 5.41 -104.47 -0.56 -2.40 16 6 C 0.11 2.10 5.48 -4.97 -0.03 2.07 16 7 N -0.68 -15.65 6.48 -116.34 -0.75 -16.40 16 8 C 0.20 5.35 5.44 -4.97 -0.03 5.32 16 9 C -0.51 -14.95 9.32 -34.44 -0.32 -15.27 16 10 H 0.06 1.78 7.81 -52.48 -0.41 1.37 16 11 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 12 N -0.90 -27.51 13.29 55.43 0.74 -26.78 16 13 Si 0.90 22.22 29.54 -169.99 -5.02 17.20 16 14 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 15 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 16 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 17 C 0.16 2.60 6.66 -39.22 -0.26 2.34 16 18 O -0.29 -4.94 9.37 -19.44 -0.18 -5.12 16 19 C 0.09 1.20 5.02 37.15 0.19 1.38 16 20 C -0.15 -1.89 6.06 -90.62 -0.55 -2.44 16 21 C -0.17 -1.95 10.18 -26.73 -0.27 -2.23 16 22 C -0.17 -1.66 10.25 -26.73 -0.27 -1.94 16 23 C -0.22 -2.97 8.69 -39.44 -0.34 -3.31 16 24 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 25 H 0.07 0.53 8.08 -51.93 -0.42 0.11 16 26 H 0.06 0.52 8.08 -51.94 -0.42 0.10 16 27 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 28 H 0.13 1.64 8.03 -52.48 -0.42 1.22 16 29 H 0.07 1.53 7.85 -51.93 -0.41 1.12 16 30 H 0.02 0.45 8.00 -51.93 -0.42 0.04 16 31 H 0.33 7.27 8.71 -39.29 -0.34 6.93 16 32 H -0.02 -0.44 8.14 -51.93 -0.42 -0.87 16 33 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 35 H 0.06 0.66 7.66 -51.93 -0.40 0.26 16 36 H 0.06 0.72 7.39 -51.93 -0.38 0.34 16 37 H 0.12 1.64 8.14 -51.93 -0.42 1.22 16 38 H 0.10 1.03 8.03 -51.93 -0.42 0.62 16 39 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.10 0.84 8.14 -51.92 -0.42 0.41 16 41 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.12 1.40 6.30 -52.48 -0.33 1.07 16 LS Contribution 352.54 15.07 5.31 5.31 Total: -1.00 -32.17 352.54 -10.36 -42.53 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -6.88 Total: 4.15 kcal Atomic # 6 Polarization: -17.32 SS G_CDS: -3.57 Total: -20.89 kcal Atomic # 7 Polarization: -43.16 SS G_CDS: -0.02 Total: -43.18 kcal Atomic # 8 Polarization: -4.94 SS G_CDS: -0.18 Total: -5.12 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.17 -10.36 -42.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574313517.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.506 kcal (2) G-P(sol) polarization free energy of solvation -32.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.528 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds