Wall clock time and date at job start Mon Mar 30 2020 01:15:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38290 * 119.96937 * 2 1 4 4 C 1.38246 * 120.10639 * 179.73154 * 3 2 1 5 5 C 1.38161 * 120.05656 * 0.54821 * 4 3 2 6 6 C 1.50704 * 120.02985 * 179.74961 * 5 4 3 7 7 N 1.46898 * 109.47041 * 259.72621 * 6 5 4 8 8 C 1.46906 * 110.99888 * 179.97438 * 7 6 5 9 9 C 1.50699 * 109.47140 * 179.97438 * 8 7 6 10 10 H 1.08003 * 119.99962 * 359.97438 * 9 8 7 11 11 C 1.37873 * 119.99861 * 180.02562 * 9 8 7 12 12 N 1.31522 * 120.00244 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 119.99980 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47229 * 89.99965 * 13 11 9 15 15 H 1.48500 * 109.46876 * 209.99805 * 13 11 9 16 16 H 1.48499 * 109.47161 * 329.99530 * 13 11 9 17 17 C 1.38712 * 119.94417 * 359.47684 * 5 4 3 18 18 O 1.35904 * 120.05619 * 180.22900 * 17 5 4 19 19 C 1.42907 * 116.99891 * 179.97438 * 18 17 5 20 20 C 1.52994 * 109.46855 * 180.02562 * 19 18 17 21 21 C 1.53002 * 117.49923 * 243.62064 * 20 19 18 22 22 C 1.52994 * 60.00161 * 252.51448 * 21 20 19 23 23 C 1.38116 * 119.97157 * 180.02562 * 2 1 3 24 24 H 1.09002 * 109.46681 * 269.97931 * 1 2 3 25 25 H 1.09001 * 109.47309 * 29.96928 * 1 2 3 26 26 H 1.08989 * 109.47386 * 149.97687 * 1 2 3 27 27 H 1.07997 * 119.94664 * 0.02682 * 3 2 1 28 28 H 1.08005 * 119.97049 * 180.27951 * 4 3 2 29 29 H 1.08997 * 109.46924 * 139.72532 * 6 5 4 30 30 H 1.08995 * 109.46962 * 19.72686 * 6 5 4 31 31 H 1.00901 * 111.00121 * 56.04537 * 7 6 5 32 32 H 1.09004 * 109.47040 * 299.99934 * 8 7 6 33 33 H 1.09000 * 109.47033 * 59.99886 * 8 7 6 34 34 H 0.96992 * 120.00038 * 179.97438 * 12 11 9 35 35 H 1.08994 * 109.46982 * 300.00187 * 19 18 17 36 36 H 1.08996 * 109.46891 * 59.99771 * 19 18 17 37 37 H 1.09002 * 115.55503 * 29.32871 * 20 19 18 38 38 H 1.09005 * 117.49776 * 0.02562 * 21 20 19 39 39 H 1.09002 * 117.50272 * 145.01787 * 21 20 19 40 40 H 1.09008 * 117.49748 * 252.51269 * 22 21 20 41 41 H 1.09003 * 117.50040 * 107.49099 * 22 21 20 42 42 H 1.08003 * 120.02710 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1980 0.0000 4 6 3.5803 1.2013 0.0056 5 6 4.2752 0.0072 -0.0002 6 6 5.7822 0.0115 0.0002 7 7 6.2729 -0.2272 -1.3637 8 6 7.7415 -0.2292 -1.4020 9 6 8.2068 -0.4771 -2.8137 10 1 7.4840 -0.6194 -3.6034 11 6 9.5554 -0.5232 -3.0969 12 7 10.4356 -0.3504 -2.1351 13 14 10.1322 -0.8298 -4.8470 14 1 10.2813 0.4678 -5.5535 15 1 11.4402 -1.5324 -4.8210 16 1 9.1338 -1.6686 -5.5575 17 6 3.5845 -1.1958 -0.0007 18 8 4.2658 -2.3718 -0.0018 19 6 3.4892 -3.5714 -0.0017 20 6 4.4230 -4.7833 -0.0022 21 6 4.3760 -5.7108 -1.2182 22 6 3.7832 -6.1681 0.1160 23 6 2.1970 -1.1965 -0.0005 24 1 -0.3633 -0.0004 1.0277 25 1 -0.3634 0.8903 -0.5134 26 1 -0.3633 -0.8897 -0.5141 27 1 1.6565 2.1325 0.0004 28 1 4.1176 2.1382 0.0102 29 1 6.1476 -0.7748 0.6607 30 1 6.1426 0.9781 0.3520 31 1 5.8956 0.4517 -2.0077 32 1 8.1151 0.7361 -1.0600 33 1 8.1208 -1.0169 -0.7511 34 1 11.3843 -0.3833 -2.3343 35 1 2.8611 -3.5975 0.8887 36 1 2.8597 -3.5967 -0.8911 37 1 5.3893 -4.6326 0.4791 38 1 3.6801 -5.4572 -2.0180 39 1 5.3115 -6.1702 -1.5373 40 1 4.3288 -6.9285 0.6749 41 1 2.6970 -6.2157 0.1942 42 1 1.6570 -2.1318 -0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000574313517.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:35 Heat of formation + Delta-G solvation = -18.242836 kcal Electronic energy + Delta-G solvation = -20754.693891 eV Core-core repulsion = 17699.429054 eV Total energy + Delta-G solvation = -3055.264837 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.26851 -39.06290 -37.54880 -37.17393 -34.87815 -33.33107 -31.02482 -29.83886 -28.67588 -27.52785 -24.88409 -23.48387 -23.36098 -23.23586 -22.12249 -21.19203 -18.81450 -18.45072 -17.40963 -16.91422 -16.79033 -16.42686 -16.23983 -15.55247 -15.31122 -15.20082 -14.84057 -14.63089 -14.40368 -14.02028 -13.82122 -13.45488 -13.29846 -13.11648 -12.78306 -12.69098 -12.59603 -12.41403 -12.33551 -12.19991 -12.03007 -11.93349 -11.63453 -11.40033 -11.28541 -10.87160 -10.67417 -9.68037 -9.11146 -8.95568 -8.23051 -6.34817 0.36201 0.55624 1.39176 1.41781 1.53712 2.23444 2.39273 2.78046 2.89637 3.09502 3.68551 3.77016 3.79810 3.88891 3.94630 4.05814 4.13107 4.21248 4.28475 4.33093 4.47195 4.56469 4.61112 4.63687 4.74800 4.77800 4.87612 4.88858 4.98005 4.99652 5.06130 5.19382 5.22317 5.23097 5.30488 5.42317 5.55799 5.60687 5.68442 5.97380 6.00668 6.43798 6.61120 6.70959 6.87500 7.35916 8.88732 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.012382 B = 0.004909 C = 0.003807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2260.751152 B = 5702.613670 C = 7353.911089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.051 4.051 3 C -0.162 4.162 4 C -0.079 4.079 5 C -0.141 4.141 6 C 0.115 3.885 7 N -0.676 5.676 8 C 0.212 3.788 9 C -0.534 4.534 10 H 0.061 0.939 11 C 0.002 3.998 12 N -0.935 5.935 13 Si 0.975 3.025 14 H -0.269 1.269 15 H -0.279 1.279 16 H -0.266 1.266 17 C 0.139 3.861 18 O -0.324 6.324 19 C 0.091 3.909 20 C -0.180 4.180 21 C -0.184 4.184 22 C -0.141 4.141 23 C -0.219 4.219 24 H 0.084 0.916 25 H 0.080 0.920 26 H 0.074 0.926 27 H 0.149 0.851 28 H 0.134 0.866 29 H 0.052 0.948 30 H 0.026 0.974 31 H 0.331 0.669 32 H -0.039 1.039 33 H -0.005 1.005 34 H 0.266 0.734 35 H 0.080 0.920 36 H 0.068 0.932 37 H 0.092 0.908 38 H 0.101 0.899 39 H 0.092 0.908 40 H 0.110 0.890 41 H 0.117 0.883 42 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.133 -4.576 5.652 23.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.052 4.052 3 C -0.180 4.180 4 C -0.097 4.097 5 C -0.142 4.142 6 C -0.014 4.014 7 N -0.307 5.307 8 C 0.084 3.916 9 C -0.572 4.572 10 H 0.080 0.920 11 C -0.196 4.196 12 N -0.575 5.575 13 Si 0.799 3.201 14 H -0.194 1.194 15 H -0.205 1.205 16 H -0.190 1.190 17 C 0.093 3.907 18 O -0.237 6.237 19 C 0.017 3.983 20 C -0.199 4.199 21 C -0.221 4.221 22 C -0.178 4.178 23 C -0.237 4.237 24 H 0.103 0.897 25 H 0.099 0.901 26 H 0.093 0.907 27 H 0.166 0.834 28 H 0.152 0.848 29 H 0.071 0.929 30 H 0.045 0.955 31 H 0.148 0.852 32 H -0.021 1.021 33 H 0.013 0.987 34 H 0.074 0.926 35 H 0.098 0.902 36 H 0.087 0.913 37 H 0.110 0.890 38 H 0.120 0.880 39 H 0.110 0.890 40 H 0.128 0.872 41 H 0.135 0.865 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -21.775 -5.318 5.750 23.140 hybrid contribution 1.265 0.789 -0.455 1.559 sum -20.510 -4.529 5.295 21.661 Atomic orbital electron populations 1.20851 0.88459 1.03893 1.03447 1.20098 0.97716 0.91882 0.95490 1.21173 0.93182 0.98803 1.04859 1.21080 0.95057 0.96329 0.97254 1.19269 0.94657 0.91909 1.08328 1.20516 0.91084 0.98362 0.91447 1.60545 1.09116 1.54858 1.06144 1.19186 0.83410 0.92716 0.96301 1.21494 0.92217 1.49013 0.94491 0.92031 1.25973 0.96645 0.94688 1.02332 1.70102 1.01944 1.50984 1.34471 0.85301 0.77558 0.78651 0.78590 1.19385 1.20478 1.19036 1.18987 0.91022 0.85402 0.95338 1.86208 1.36641 1.12849 1.88049 1.22419 0.92900 0.81139 1.01866 1.22084 1.01352 0.90910 1.05516 1.23145 1.03512 1.03240 0.92192 1.23087 1.01674 0.94093 0.98962 1.21293 0.91652 1.00260 1.10511 0.89723 0.90088 0.90733 0.83370 0.84793 0.92949 0.95547 0.85192 1.02110 0.98727 0.92555 0.90249 0.91342 0.88968 0.88050 0.88968 0.87214 0.86509 0.83806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.50 10.01 71.24 0.71 -0.79 16 2 C -0.05 -1.13 5.88 -19.88 -0.12 -1.25 16 3 C -0.16 -3.74 9.70 22.28 0.22 -3.52 16 4 C -0.08 -2.25 9.66 22.25 0.22 -2.03 16 5 C -0.14 -4.93 5.41 -19.77 -0.11 -5.04 16 6 C 0.11 4.82 5.48 85.56 0.47 5.29 16 7 N -0.68 -32.92 6.48 -521.97 -3.38 -36.30 16 8 C 0.21 12.30 5.44 85.56 0.47 12.76 16 9 C -0.53 -32.30 9.32 25.60 0.24 -32.06 16 10 H 0.06 3.64 7.81 -2.91 -0.02 3.62 16 11 C 0.00 0.10 5.46 84.65 0.46 0.56 16 12 N -0.93 -58.60 13.29 21.45 0.28 -58.31 16 13 Si 0.98 45.88 29.54 68.60 2.03 47.90 16 14 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 15 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 16 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 17 C 0.14 4.61 6.66 22.51 0.15 4.76 16 18 O -0.32 -11.58 9.37 -92.47 -0.87 -12.44 16 19 C 0.09 2.35 5.02 71.98 0.36 2.71 16 20 C -0.18 -4.60 6.06 -10.79 -0.07 -4.66 16 21 C -0.18 -4.15 10.18 30.59 0.31 -3.84 16 22 C -0.14 -2.46 10.25 30.59 0.31 -2.15 16 23 C -0.22 -5.59 8.69 22.36 0.19 -5.40 16 24 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 25 H 0.08 0.91 8.08 -2.39 -0.02 0.89 16 26 H 0.07 0.89 8.08 -2.39 -0.02 0.87 16 27 H 0.15 2.50 8.06 -2.91 -0.02 2.47 16 28 H 0.13 3.45 8.03 -2.91 -0.02 3.43 16 29 H 0.05 2.37 7.85 -2.39 -0.02 2.35 16 30 H 0.03 1.07 8.00 -2.39 -0.02 1.05 16 31 H 0.33 15.38 8.71 -89.69 -0.78 14.60 16 32 H -0.04 -2.37 8.14 -2.38 -0.02 -2.39 16 33 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 34 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 35 H 0.08 1.65 7.66 -2.39 -0.02 1.64 16 36 H 0.07 1.59 7.39 -2.39 -0.02 1.57 16 37 H 0.09 2.79 8.14 -2.39 -0.02 2.77 16 38 H 0.10 2.13 8.03 -2.38 -0.02 2.11 16 39 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 40 H 0.11 1.67 8.14 -2.38 -0.02 1.65 16 41 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.14 2.92 6.30 -2.91 -0.02 2.91 16 Total: -1.00 -72.23 352.54 2.10 -70.13 By element: Atomic # 1 Polarization: 23.47 SS G_CDS: 0.21 Total: 23.68 kcal Atomic # 6 Polarization: -38.47 SS G_CDS: 3.82 Total: -34.65 kcal Atomic # 7 Polarization: -91.52 SS G_CDS: -3.10 Total: -94.62 kcal Atomic # 8 Polarization: -11.58 SS G_CDS: -0.87 Total: -12.44 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.90 kcal Total: -72.23 2.10 -70.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574313517.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.889 kcal (2) G-P(sol) polarization free energy of solvation -72.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds